Clone BS30507 Report

Search the DGRC for BS30507

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:305
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG1890-RA
Protein status:BS30507.pep: full length peptide match
Sequenced Size:365

Clone Sequence Records

BS30507.complete Sequence

365 bp assembled on 2012-07-09

GenBank Submission: KX805971

> BS30507.complete
GAAGTTATCAGTCGACATGACAGACCCCCGCATCCGGCAACTGGTGATTA
AATCCGGAGTGGTCCGGCGGTTGACCAGGGAGAAGTACTGCTACGCCAAG
GAAGTGCTGACCGAGCAGGCGCGGTTGGAGAAGCTCAGGGGCGACGGAGC
CGACGACCACGTACTGCGCAAGCAGGAGGAGGTCATCCAGGAGTGCATCA
TGATGGTGCCCGACTCCAAGAGAAGACTGCAGAAGGAGTACGAGGTACTG
GAAAAGTACCTCGCCGATGAGCAGGACCTGATCGAGACAGATTCGTATAA
GAAGGCAGCAGAGATCCTCAAAGATGCCAAAGCTGAACTGGAGACCTAGA
AGCTTTCTAGACCAT

BS30507.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1890-RA 333 CG1890-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1890-RA 704 CG1890-RA 140..474 17..351 1675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31743629..31743837 17..225 1045 100 Plus
3R 32079331 3R 31743891..31744018 224..351 640 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:40:32 has no hits.

BS30507.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:24 Download gff for BS30507.complete
Subject Subject Range Query Range Percent Splice Strand
CG1890-RA 124..456 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:44 Download gff for BS30507.complete
Subject Subject Range Query Range Percent Splice Strand
CG1890-RA 140..472 17..349 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:01 Download gff for BS30507.complete
Subject Subject Range Query Range Percent Splice Strand
CG1890-RA 140..472 17..349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:01 Download gff for BS30507.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31743629..31743837 17..225 100 -> Plus
3R 31743893..31744016 226..349 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:44 Download gff for BS30507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27569351..27569559 17..225 100 -> Plus
arm_3R 27569615..27569738 226..349 100   Plus

BS30507.pep Sequence

Translation from 16 to 348

> BS30507.pep
MTDPRIRQLVIKSGVVRRLTREKYCYAKEVLTEQARLEKLRGDGADDHVL
RKQEEVIQECIMMVPDSKRRLQKEYEVLEKYLADEQDLIETDSYKKAAEI
LKDAKAELET*

BS30507.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1890-PA 110 CG1890-PA 1..110 1..110 550 100 Plus
CG9072-PA 149 CG9072-PA 35..146 2..109 140 29.5 Plus