Clone BS30508 Report

Search the DGRC for BS30508

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:305
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG10375-RA
Protein status:BS30508.pep: full length peptide match
Sequenced Size:797

Clone Sequence Records

BS30508.complete Sequence

797 bp assembled on 2012-09-04

GenBank Submission: KX805303

> BS30508.complete
GAAGTTATCAGTCGACATGTCCTCCTCGTCGGCCAGAGACCAACCGGGAA
CCTCCCATGACAACTTCGAGGAATTCTACACAGAAGTGAAAGAAATTGAA
AAACGTGATTCAGTTTTAACTCCTTCTCAACAAATTGATCGTTTACTTCG
TCCAGGTTCAACGTACTTCAATCTCAATCCGTTTGAGGTGCTCCAAATCG
AGCCCGAGGTCGAATTGGCGGATATAAAAAAGCGATACCGCACCTTGTCA
ATCCTCGTCCATCCAGACAAGAATCCCGACAACCAGGAGCGCGCTCAAAT
GGCATTCGATATTGTGTCGCGTTCCTGGAAAATCCTCGAAAACGAACTCA
CGCGCAAAAGGTGTCTGGAGGTGTACGAGGAGGCAAAGGGGCGAACGGAT
CAAATGATTGCAGAAAAGCGTAAAAAGCTTAAAAAAGAGGGTCGGCCCAC
TGAGCCAATACCCGAGGACGATCCCACCAAGTACAAGCACGCCATCTACG
TTATGGTCATGAAACTGTTTGCCGACATGGAGCGTCGACGGCAAAAGCTC
GACCAACGCGACCAGGAGGAGCGAAAGCGAAAGCGCGAAACGGAAATCGA
GGAGGAGGAGCGGATAAAGGCGGACCGCGAATGGCAGCAGAACTTCGAAG
AGTCGCGCCAGAGCCGAGTAAACAGCTGGCATGACTTTCAGTCGGGTGCC
GGCAAGTCCAAGAAAGCCAAGAAACAAAAACATATGACCGGCATGATGGT
TCCACCAAAATTTAAGCCCGAGTCGCGATAAAAGCTTTCTAGACCAT

BS30508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10375-RA 765 CG10375-PA 1..765 17..781 3825 100 Plus
CG10375-RB 483 CG10375-PB 1..483 299..781 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10375-RA 1008 CG10375-RA 90..855 16..781 3830 100 Plus
CG10375-RB 938 CG10375-RB 160..785 156..781 3130 100 Plus
tst-RA 4332 CG10210-RA 3900..4275 781..406 1880 100 Minus
CG10375-RB 938 CG10375-RB 90..161 16..87 360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23768456..23768831 406..781 1880 100 Plus
3R 32079331 3R 23768009..23768329 86..406 1605 100 Plus
3R 32079331 3R 23767801..23767872 16..87 360 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:55:56 has no hits.

BS30508.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-04 12:26:06 Download gff for BS30508.complete
Subject Subject Range Query Range Percent Splice Strand
CG10375-RA 91..853 17..779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:27 Download gff for BS30508.complete
Subject Subject Range Query Range Percent Splice Strand
CG10375-RA 91..853 17..779 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:09 Download gff for BS30508.complete
Subject Subject Range Query Range Percent Splice Strand
CG10375-RA 91..853 17..779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:09 Download gff for BS30508.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23767802..23767870 17..85 100 -> Plus
3R 23768009..23768329 86..406 100 -> Plus
3R 23768457..23768829 407..779 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:27 Download gff for BS30508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19594179..19594551 407..779 100   Plus
arm_3R 19593524..19593592 17..85 100 -> Plus
arm_3R 19593731..19594051 86..406 100 -> Plus

BS30508.pep Sequence

Translation from 16 to 780

> BS30508.pep
MSSSSARDQPGTSHDNFEEFYTEVKEIEKRDSVLTPSQQIDRLLRPGSTY
FNLNPFEVLQIEPEVELADIKKRYRTLSILVHPDKNPDNQERAQMAFDIV
SRSWKILENELTRKRCLEVYEEAKGRTDQMIAEKRKKLKKEGRPTEPIPE
DDPTKYKHAIYVMVMKLFADMERRRQKLDQRDQEERKRKRETEIEEEERI
KADREWQQNFEESRQSRVNSWHDFQSGAGKSKKAKKQKHMTGMMVPPKFK
PESR*

BS30508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10375-PA 254 CG10375-PA 1..254 1..254 1322 100 Plus
CG10375-PB 160 CG10375-PB 1..160 95..254 838 100 Plus