BS30515.complete Sequence
1109 bp assembled on 2012-07-10
GenBank Submission: KX803475
> BS30515.complete
GAAGTTATCAGTCGACATGGAGATGGCCTACAATGCGTCATCGTCGGCGG
CCTCCGTCGGCTCTGCTTCTGCCGCCGCCTCTGCCACCGCCTCCTTCGCC
TTCACCAACACCGCCAAGCTGCCCATCGAAACGGTGAAGCGCCTGATTGC
CGCCGTCTCACGACGTCCGATGTTGTGGCTGCGCAACAATGCCAATGGCC
AGAAGCGCAGCGACATCACGCCTGTTTGGTTCGAGGTGGGTCAGGATGTG
AATTTGCCAGCCGACATCTGCCGAATTAAGTGGGGCCACCTGAGGGACAA
CTTTCGCAAGGTGTACATCCGCAATAACCTGTCCAATGAGACGCCCTCGT
CGTGGCGCTTCTACAACGATATGCGGTTCATGGAGCCCGCCGTTCACGAG
AATATCATGCGTCAGACGCGAAGCAGCAGCAAGAAGCACCCACCCGGACA
CTGGACGGAGAACAATAATGTGCTGGGGCCGGACAAGTATGACTCAATGC
CCATTGTTGCTACGGAGCCCATATGCGAGCTCAGCCACAGCTATGACTCG
GAGCTACACCAGCCCAGCTTCTCGGACATCAGTTCGTTCTTCGAGGATCG
CGACTGCCAGCCGCCGGAGAATAAGAGATTTAAGTCGGAGCCCAGTCAGA
GGGAGGAGGACGAGGAGGATGACGATGACTTCGACGAAGATGCCGCCTCG
GAGAACTTGGAAGAGGAACGCGGCAATCGTGCCGATGCTGCCAGTTCCGG
TGTATTCACCATAGAAGTGCTCGATGACGACGACGAAATGGAGCAGGCGG
TGACCAAGACCAAGGCGAATAACACTAGCCACGGCGGATCCAGCCTGAAG
AGCGAGCAGGAGGCCAAGGTGTTCTCCAATTCGCAGTCACCCACCGCCGA
TCTGCCATTCAAGTATATCAGCACGGATGTGGCCACGAATACGGATCCCT
CTGGTGGAGATCTCCAGGACGAGGCGGATCGCATGTTCCTGCTCAGTCTG
ATGCCCTTCCTGCAAAGATTGGACAGCCGCCGGCGTCTGCGCGTGCGCCA
GAAATTACAGAACGTGCTCATCGAGGAACTGGAGTTTGGCTGAAAGCTTT
CTAGACCAT
BS30515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coop-RB | 1077 | CG1621-PB | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| Coop-RA | 1077 | CG1621-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coop-RB | 1413 | CG1621-RB | 121..1200 | 14..1093 | 5400 | 100 | Plus |
| Coop-RA | 1690 | CG1621-RA | 398..1477 | 14..1093 | 5400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7491049..7491884 | 1093..258 | 4180 | 100 | Minus |
| 2R | 25286936 | 2R | 7491946..7492192 | 260..14 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:41:43 has no hits.
BS30515.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-10 13:51:22 Download gff for
BS30515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1621-RA | 391..1466 | 17..1092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:08 Download gff for
BS30515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coop-RA | 401..1476 | 17..1092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:27 Download gff for
BS30515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coop-RA | 401..1476 | 17..1092 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:27 Download gff for
BS30515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7491946..7492189 | 17..260 | 100 | | Minus |
| 2R | 7491050..7491881 | 261..1092 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:08 Download gff for
BS30515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3378555..3379386 | 261..1092 | 100 | <- | Minus |
| arm_2R | 3379451..3379694 | 17..260 | 100 | | Minus |
BS30515.pep Sequence
Translation from 16 to 1092
> BS30515.pep
MEMAYNASSSAASVGSASAAASATASFAFTNTAKLPIETVKRLIAAVSRR
PMLWLRNNANGQKRSDITPVWFEVGQDVNLPADICRIKWGHLRDNFRKVY
IRNNLSNETPSSWRFYNDMRFMEPAVHENIMRQTRSSSKKHPPGHWTENN
NVLGPDKYDSMPIVATEPICELSHSYDSELHQPSFSDISSFFEDRDCQPP
ENKRFKSEPSQREEDEEDDDDFDEDAASENLEEERGNRADAASSGVFTIE
VLDDDDEMEQAVTKTKANNTSHGGSSLKSEQEAKVFSNSQSPTADLPFKY
ISTDVATNTDPSGGDLQDEADRMFLLSLMPFLQRLDSRRRLRVRQKLQNV
LIEELEFG*
BS30515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coop-PB | 358 | CG1621-PB | 1..358 | 1..358 | 1863 | 100 | Plus |
| Coop-PA | 358 | CG1621-PA | 1..358 | 1..358 | 1863 | 100 | Plus |
