Clone BS30517 Report

Search the DGRC for BS30517

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:305
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptElba2-RA
Protein status:BS30517.pep: full length peptide match
Sequenced Size:1178

Clone Sequence Records

BS30517.complete Sequence

1178 bp assembled on 2012-07-09

GenBank Submission: KX803848

> BS30517.complete
GAAGTTATCAGTCGACATGGCCGGCGGATTTCGACCGTACGATCAGGACT
CGTGTCCTAACCTTACAAATAGCGAGGCTCCGGAATTCAGCATGTCAGTC
GTTTGCAAAACGGAGCCGCACTACTTTCATCCGCAGACTGCTATCCTGCC
CAGCGTCCAGTACTCCCACCCATATCACCACTATCTGAGCCAGTTCGCCC
CGAACTTCGTGCCCTACTACTACCGCCTGCTCTCGCGGCCCATAATGAAG
CAGGAGGAGATGGACATCGAGAACTACATCAACTACGAGGTGGCCGCCCA
GCAGACCATGATGCGCCAGCGGACCCTGAAGCCCCTGGGTCAGCTGCAGA
TCCAAATGCCGCCTCCCATAATAGTCAACCAGCCAGTTAAGCCAGTTCCC
GTTAAGGCAGTGCCAGTCCGCCGAAGCTCTCCGCCCAAGCGACGCGTCAT
CAATGCCCAGTTGGTAGCGGTAGCCACCGCTTCCGGGGGCATTAAGAACA
TCGAACCGCGGGTGGAGCCACTGCCTCGCCTGGAGGAATCCTTTAAGCAG
CAAGTGGCCAAAATCCAGAAGAGTCAGCACCACTACGAACAACTCTTTGG
TCGTCTCACTTCCATGCTAAAGACCCTGAATCAGCGGTACGACAACGATG
CCGAGGATGTGCCCGCGCCGCCCTCCAAGAGACCGCGCCACATGTCCACC
AGTTCGTCGGAATCGCACATCCCAGATACTGCCTCTGAAAAGGACGAGAA
AGACACTCTTGTGCAGTACCCGCACCGAGTGCAAAAGGAGGACGGCAGTG
CGGTGTACGTACTGGGACCCAATGGCACCCAGATCACAGCCCATCAGTAC
GGTGAGGTCTTCTGGACCAACGCCCCGGTGGCCACGAGGTGTCTTCTTTG
CGTTGTCTTCAGCAGCGATGAGTTGGCTACCCACACGCTGACCGGGAAGC
CGTCGCCCGCATTCTACGGCCGCGAAAGACCCCCAAAGCTCCAGTTAGAC
CAACGCAAGGTGGACGACATCGTGGTCTGTGTGAGAAACCGGACGGGCGG
CAAGGAACGGGTGATTCGGGCCACCATCACTACCAAGTGTGCGGATACCG
CCAAGAAGTACAAGAGGCGGGCCAAGAAGGCCCAGAAGGTCGCCATCAAG
GAGGAGTATTAGAAGCTTTCTAGACCAT

BS30517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Elba2-RA 1146 CG9883-PA 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Elba2-RA 1493 CG9883-RA 177..1322 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2577863..2579008 17..1162 5730 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:40:36 has no hits.

BS30517.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:25 Download gff for BS30517.complete
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 193..1338 17..1162 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:45 Download gff for BS30517.complete
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 177..1322 17..1162 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:03 Download gff for BS30517.complete
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 177..1322 17..1162 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:03 Download gff for BS30517.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2577863..2579008 17..1162 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:45 Download gff for BS30517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2577863..2579008 17..1162 100   Plus

BS30517.pep Sequence

Translation from 16 to 1161

> BS30517.pep
MAGGFRPYDQDSCPNLTNSEAPEFSMSVVCKTEPHYFHPQTAILPSVQYS
HPYHHYLSQFAPNFVPYYYRLLSRPIMKQEEMDIENYINYEVAAQQTMMR
QRTLKPLGQLQIQMPPPIIVNQPVKPVPVKAVPVRRSSPPKRRVINAQLV
AVATASGGIKNIEPRVEPLPRLEESFKQQVAKIQKSQHHYEQLFGRLTSM
LKTLNQRYDNDAEDVPAPPSKRPRHMSTSSSESHIPDTASEKDEKDTLVQ
YPHRVQKEDGSAVYVLGPNGTQITAHQYGEVFWTNAPVATRCLLCVVFSS
DELATHTLTGKPSPAFYGRERPPKLQLDQRKVDDIVVCVRNRTGGKERVI
RATITTKCADTAKKYKRRAKKAQKVAIKEEY*

BS30517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Elba2-PA 381 CG9883-PA 1..381 1..381 2006 100 Plus
insv-PB 376 CG3227-PB 172..371 184..380 251 30.5 Plus
insv-PA 376 CG3227-PA 172..371 184..380 251 30.5 Plus
Bsg25A-PA 363 CG12205-PA 249..363 261..374 230 43.5 Plus