BS30519.complete Sequence
1382 bp assembled on 2012-09-04
GenBank Submission: KX803244
> BS30519.complete
GAAGTTATCAGTCGACATGCTGCGGACCTTTGCCATTCTGCTACTGATCG
CAGTTTACAGCCACGCAAGAGCTGCGCCACAGAAAACAACCGTTTCGCCG
GAGTATGAAGCCACCGAGGACGTGGACTCCTCCACCTATATGTCCGTGGA
GGAGAGCACCATTACGGTAGATGTCGACTCGGACGTGATATTGACCACCA
ATCCTGAGGGGGAGGCCTTCACCGAAGCCAGCCCGATAGTTACGACGGAG
GAGCCACTTCCGGATTCGGTGGTGCAACAGCTTGAGATGGAGCGTGCACA
GGAGGAGGAGCTCAAGAATCCCGAAAAGCCGGAAGATGACCTCGATTCGG
ACTCGGAGGAGGAGGATCAGACCACATCAACAAGTACTGAGCAACCAAAG
TCTGAAGTTTCCGAGAGCACCACCAAGCGGAGCTACAAATTCGGAGCTAC
CACACTGCCACCGAATTTCATCACAACCACTAGAAGAGTGGAGATCACCA
CTATTCTGCCACAGGACGGAGCCACGACTCCTAATGCTGAGACCGAGGAA
ACCACCGTCAAGGAGGAGGTCAAAACCATAAGGAACTACTTCGAGCGGAA
GCCCGCACATATGGAAGAGATTGAACTGGACATGGCCGAGAACCGAATGG
AAACGACCACAAATGAACCCCTCCATGAGAACGTAGAGCTTTCCATGATT
ATGACCACCGACGCCGCATTGGTGGAAGAGGATAAAAAGACCGGAATTGA
GACTGATCAGGCAGAGACGGTGGAAACCACAGTGGTGCCTGTTTACCAAT
ACGTTAGCAATGCAGCTCCTATCGTCACTGAACCACAACCGGAATCAACT
ACGGTGGTGCCCACAGTAAAGGAAGAGGCAGCCACCACTGAGGGTGCCAT
TGAGGAAACTACAGAACTGCCACTAGTTTTGTCCTCTGCATTTAAACCCA
CCAGTGAGGCTGAGGAGACCACTGAAACAGCTCCAAGCACCTCCACTTCA
ACCACCGAGACTGTTCTGATCACCACCAAGGTGGGAACATTGGAGAACTT
CCAGCCAGAGACCACCACGAGTGCTTTGGACACAACATCCACTACGAGCA
CCACTGAAGCTCCAACTACGACGAGCACCACAAGCAGCACTGAAGATCCA
ACTACAACGAGCACCACTGAGGCTCCAACTACGACGAGCACCACTGAAGC
TCCAACTACGACAAGTACCACCAGCACCACCAGTGCTCCAACCACAACCA
CCACCACAGAACGCCCCATTCAGACGCGAGCTCCGCGTGTGGAGAGAATC
TTCAACTCCGACGGAGTGGAGGTGCTCTACGGATACTCGTCTGTGGTGCG
GACCAACCGCTCGTGAAAGCTTTCTAGACCAT
BS30519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17104-RC | 1350 | CG17104-PC | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
| CG17104-RB | 1350 | CG17104-PB | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
| CG17104-RA | 1350 | CG17104-PA | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
| CG17104-RC | 1350 | CG17104-PC | 1117..1178 | 1160..1221 | 205 | 88.7 | Plus |
| CG17104-RC | 1350 | CG17104-PC | 1144..1205 | 1133..1194 | 205 | 88.7 | Plus |
| CG17104-RB | 1350 | CG17104-PB | 1117..1178 | 1160..1221 | 205 | 88.7 | Plus |
| CG17104-RB | 1350 | CG17104-PB | 1144..1205 | 1133..1194 | 205 | 88.7 | Plus |
| CG17104-RC | 1350 | CG17104-PC | 1078..1151 | 1184..1257 | 190 | 83.8 | Plus |
| CG17104-RC | 1350 | CG17104-PC | 1168..1241 | 1094..1167 | 190 | 83.8 | Plus |
| CG17104-RB | 1350 | CG17104-PB | 1078..1151 | 1184..1257 | 190 | 83.8 | Plus |
| CG17104-RB | 1350 | CG17104-PB | 1168..1241 | 1094..1167 | 190 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17104-RC | 1593 | CG17104-RC | 88..1441 | 13..1366 | 6740 | 99.9 | Plus |
| CG17104-RB | 2130 | CG17104-RB | 425..1778 | 13..1366 | 6740 | 99.9 | Plus |
| CG17104-RA | 1763 | CG17104-RA | 258..1611 | 13..1366 | 6740 | 99.9 | Plus |
| CG17104-RC | 1593 | CG17104-RC | 1208..1269 | 1160..1221 | 205 | 88.7 | Plus |
| CG17104-RC | 1593 | CG17104-RC | 1235..1296 | 1133..1194 | 205 | 88.7 | Plus |
| CG17104-RB | 2130 | CG17104-RB | 1545..1606 | 1160..1221 | 205 | 88.7 | Plus |
| CG17104-RB | 2130 | CG17104-RB | 1572..1633 | 1133..1194 | 205 | 88.7 | Plus |
| CG17104-RC | 1593 | CG17104-RC | 1169..1242 | 1184..1257 | 190 | 83.8 | Plus |
| CG17104-RC | 1593 | CG17104-RC | 1259..1332 | 1094..1167 | 190 | 83.8 | Plus |
| CG17104-RB | 2130 | CG17104-RB | 1506..1579 | 1184..1257 | 190 | 83.8 | Plus |
| CG17104-RB | 2130 | CG17104-RB | 1596..1669 | 1094..1167 | 190 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10677904..10678805 | 13..914 | 4495 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10678900..10679355 | 911..1366 | 2265 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10679122..10679183 | 1160..1221 | 205 | 88.7 | Plus |
| 2L | 23513712 | 2L | 10679149..10679210 | 1133..1194 | 205 | 88.7 | Plus |
| 2L | 23513712 | 2L | 10679173..10679246 | 1094..1167 | 190 | 83.8 | Plus |
| 2L | 23513712 | 2L | 10679083..10679156 | 1184..1257 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:55:03 has no hits.
BS30519.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-04 11:55:40 Download gff for
BS30519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17104-RA | 257..1605 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:06 Download gff for
BS30519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17104-RA | 262..1610 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:45 Download gff for
BS30519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17104-RA | 262..1610 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:45 Download gff for
BS30519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10677908..10678805 | 17..914 | 100 | -> | Plus |
| 2L | 10678904..10679354 | 915..1365 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:06 Download gff for
BS30519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10677908..10678805 | 17..914 | 100 | -> | Plus |
| arm_2L | 10678904..10679354 | 915..1365 | 99 | | Plus |
BS30519.pep Sequence
Translation from 16 to 1365
> BS30519.pep
MLRTFAILLLIAVYSHARAAPQKTTVSPEYEATEDVDSSTYMSVEESTIT
VDVDSDVILTTNPEGEAFTEASPIVTTEEPLPDSVVQQLEMERAQEEELK
NPEKPEDDLDSDSEEEDQTTSTSTEQPKSEVSESTTKRSYKFGATTLPPN
FITTTRRVEITTILPQDGATTPNAETEETTVKEEVKTIRNYFERKPAHME
EIELDMAENRMETTTNEPLHENVELSMIMTTDAALVEEDKKTGIETDQAE
TVETTVVPVYQYVSNAAPIVTEPQPESTTVVPTVKEEAATTEGAIEETTE
LPLVLSSAFKPTSEAEETTETAPSTSTSTTETVLITTKVGTLENFQPETT
TSALDTTSTTSTTEAPTTTSTTSSTEDPTTTSTTEAPTTTSTTEAPTTTS
TTSTTSAPTTTTTTERPIQTRAPRVERIFNSDGVEVLYGYSSVVRTNRS*
BS30519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17104-PC | 449 | CG17104-PC | 1..449 | 1..449 | 2237 | 100 | Plus |
| CG17104-PB | 449 | CG17104-PB | 1..449 | 1..449 | 2237 | 100 | Plus |
| CG17104-PA | 449 | CG17104-PA | 1..449 | 1..449 | 2237 | 100 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 328..724 | 24..413 | 313 | 26.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 220..519 | 119..423 | 308 | 30.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 245..540 | 119..414 | 305 | 29.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 360..658 | 119..423 | 305 | 30.1 | Plus |
| CG46026-PA | 666 | CG46026-PA | 276..665 | 19..414 | 302 | 28 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 283..562 | 119..414 | 301 | 31.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 412..704 | 119..414 | 295 | 30.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 103..455 | 60..414 | 291 | 28.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 294..580 | 119..414 | 290 | 29.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 117..406 | 120..423 | 288 | 30.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 376..664 | 119..414 | 288 | 31 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 101..384 | 143..423 | 286 | 31.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 463..758 | 120..420 | 276 | 28.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 493..785 | 119..422 | 267 | 30.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 82..227 | 269..414 | 226 | 38.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 77..198 | 293..414 | 199 | 38.5 | Plus |
