BS30520.complete Sequence
1451 bp assembled on 2012-08-30
GenBank Submission: KX806278
> BS30520.complete
GAAGTTATCAGTCGACATGGCCGAAACGAGCGAAAAGATCAAGTTCCTTG
TGGCGGACACCACAGCCTTTATAAACGCCGTGCCCCTGAATGAATACGCG
GAGCAGGTGCTCACCGTGCCGGATGTGGTGGCCGAAGTGCGCAACAAGCG
CCAGATTCGCCGCCTCTGCGTTCTGCCCTTCGACCTCCAGGTGCGCGAGC
CTCGTCCGGAGAGCATTAAACACTGCGTGGAGTTCGCCAAGAAAACGGGT
GACTACGCGAGTCTCTCGGGGATCGATCTGAAAGTGATCTCGCTCACCTA
CGAACTGGAAGCAGACAACGTGGGCACTGATCACCTGCGCCAGGAGCCTG
TGATGGCGCAGACCATTGCGTCCAAGGATAAACCCGAGGAGATGCAGGAT
GCTAATAACAAGAGACTGGTCGGTTGGTACATGCCCGAGGGCGAAGAGGA
GGAGGAGGAGGATTCCGAGGAGGAAGATGATTACTCCCAGGAAGAGGACG
ATGCTGAAGGCGATGAGCAGGAGGCAAATGAATCCCCAGACACTGTTAAA
GCCGCCATCGAAGCCCAATTGGCCGGCAAGGAACCATTTGCCAGCGAGAC
CATCGAAAAGGAGGAGGACCAAGACCAGGAGCCCAGTCAGGAGGAGCTGG
ACAAGCTGTTCGAGCAGCTCAAATGCGCACCCAGTGCCGAGGAAGAGAAA
GAGCTCTCGGAACTGCTCGTTTCCCAGCCGGCCGAAGTAGATGAGGAGGT
ATCCGAGCCACAAGAAGCCAAACAGAGCCAAAATCTCGACGAGGATGTGG
GTGACGATGGCTGGATCACGCATTCAAACATCAAGAAGGCCAAGAAAGCG
CTCGAGGGCAAAGTGGAAACGGATGAAGTGCCGCCCGTCGCCTGCATGAC
CACCGATTATGCGCTGCAGAACGTGCTCAAGCAGCTAAATCTCCACCTGG
CCGCCCTCAATGGCCGGATCATCAAGCAGTTGCGCACATATATACTCCGC
TGCTACGCGTGCTACAAGACCACCAGCATCATGACCAAGGTGTTTTGCCC
CAATTGTGGCAACAAGACGCTGAAACGTGTGGCCGTCAGTCTGGACGAGA
ACGGTCGCCAGGTGATTCACATCAATACGCGCCGTCCGCTGACCAATAAG
TACAAGAATCAGAGCCTGCCTCGCTTCCAGGGCGGCAAGCATTCGAGAAA
TCCGATCCTGTTCGAGGATCAGCCGATGCCCAGGCAGATGCCGTCGCGCG
TTGCCAAGACCAAGACGAACGCTCTGGATCAGGACTACACGGCCGGATTC
TCGCCCTTCGTGCTGCGCGACGTGGACTCCAAGTCCGCCATGCTGCGCTC
CAAGGGCAACCTCAAGGAGTGGGCCAGGAATAACAACTTCGAGGAGGATC
GCCGGCGCAAGAACTACAATCGCTTGTACAAGTAGAAGCTTTCTAGACCA
T
BS30520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2972-RB | 1419 | CG2972-PB | 1..1419 | 17..1435 | 7095 | 100 | Plus |
| CG2972-RA | 1419 | CG2972-PA | 1..1419 | 17..1435 | 7095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2972-RB | 1838 | CG2972-RB | 95..1514 | 17..1436 | 7100 | 100 | Plus |
| CG2972-RA | 1630 | CG2972-RA | 95..1514 | 17..1436 | 7100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10083382..10084726 | 92..1436 | 6725 | 100 | Plus |
| X | 23542271 | X | 10083248..10083323 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:54:31 has no hits.
BS30520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-30 13:49:08 Download gff for
BS30520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2972-RA | 79..1497 | 17..1435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:55 Download gff for
BS30520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2972-RA | 95..1513 | 17..1435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:32 Download gff for
BS30520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2972-RA | 95..1513 | 17..1435 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:32 Download gff for
BS30520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10083248..10083322 | 17..91 | 100 | -> | Plus |
| X | 10083382..10084725 | 92..1435 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:55 Download gff for
BS30520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9977281..9977355 | 17..91 | 100 | -> | Plus |
| arm_X | 9977415..9978758 | 92..1435 | 100 | | Plus |
BS30520.pep Sequence
Translation from 16 to 1434
> BS30520.pep
MAETSEKIKFLVADTTAFINAVPLNEYAEQVLTVPDVVAEVRNKRQIRRL
CVLPFDLQVREPRPESIKHCVEFAKKTGDYASLSGIDLKVISLTYELEAD
NVGTDHLRQEPVMAQTIASKDKPEEMQDANNKRLVGWYMPEGEEEEEEDS
EEEDDYSQEEDDAEGDEQEANESPDTVKAAIEAQLAGKEPFASETIEKEE
DQDQEPSQEELDKLFEQLKCAPSAEEEKELSELLVSQPAEVDEEVSEPQE
AKQSQNLDEDVGDDGWITHSNIKKAKKALEGKVETDEVPPVACMTTDYAL
QNVLKQLNLHLAALNGRIIKQLRTYILRCYACYKTTSIMTKVFCPNCGNK
TLKRVAVSLDENGRQVIHINTRRPLTNKYKNQSLPRFQGGKHSRNPILFE
DQPMPRQMPSRVAKTKTNALDQDYTAGFSPFVLRDVDSKSAMLRSKGNLK
EWARNNNFEEDRRRKNYNRLYK*
BS30520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2972-PB | 472 | CG2972-PB | 1..472 | 1..472 | 2441 | 100 | Plus |
| CG2972-PA | 472 | CG2972-PA | 1..472 | 1..472 | 2441 | 100 | Plus |
