BS30524.complete Sequence
1880 bp assembled on 2012-07-30
GenBank Submission: KX801889
> BS30524.complete
GAAGTTATCAGTCGACATGAGACTGTTTCTGCTAGCCCTGCTGGCTACTT
TGGCGGTAACCCAAGCGCTGGTCAAGGAGGAGATACAGGCCAAGGAGTAT
CTGGAGAATCTGAACAAGGAGCTGGCCAAGCGAACCAACGTGGAAACCGA
AGCTGCCTGGGCCTATGGCTCCAACATCACCGACGAGAACGAAAAGAAAA
AGAATGAGATATCCGCCGAGTTGGCCAAGTTCATGAAGGAGGTGGCCAGT
GATACCACCAAGTTCCAATGGCGCTCGTACCAATCGGAGGATCTCAAGCG
CCAGTTCAAGGCTCTAACCAAACTGGGCTATGCTGCTCTACCTGAAGACG
ACTATGCCGAACTGCTGGACACACTCTCCGCCATGGAGTCGAATTTCGCC
AAGGTCAAGGTGTGCGACTACAAGGATAGCACCAAGTGCGACCTAGCCCT
CGACCCGGAGATCGAGGAGGTCATCAGCAAGAGCCGTGACCACGAGGAGC
TCGCCTACTACTGGCGCGAGTTCTACGACAAGGCCGGAACCGCCGTGCGA
TCTCAATTCGAACGCTACGTGGAGCTCAACACCAAGGCAGCCAAACTGAA
TAACTTTACTTCTGGTGCCGAGGCCTGGTTGGATGAGTACGAGGACGACA
CCTTCGAGCAGCAGCTGGAGGACATCTTCGCGGATATTCGTCCGCTTTAC
CAGCAGATCCATGGCTATGTGCGTTTCCGCCTGAGGAAACACTATGGTGA
CGCGGTGGTCTCCGAGACAGGACCCATTCCCATGCACCTATTGGGCAACA
TGTGGGCACAGCAGTGGTCAGAGATTGCGGACATCGTATCCCCCTTTCCG
GAGAAGCCTCTGGTGGATGTGAGCGCTGAGATGGAAAAGCAGGGCTACAC
GCCACTCAAAATGTTCCAAATGGGCGACGACTTCTTCACGTCTATGAATC
TTACCAAGCTGCCACAGGACTTCTGGGACAAGTCGATCATTGAGAAGCCC
ACCGATGGTCGTGATCTGGTTTGCCATGCCAGCGCCTGGGACTTTTATCT
CACCGACGATGTGCGCATCAAGCAGTGCACCCGGGTTACACAGGATCAGC
TCTTCACCGTTCATCACGAACTGGGACACATTCAGTATTTCCTGCAGTAT
CAACACCAACCCTTCGTCTATCGCACTGGTGCCAATCCCGGTTTCCACGA
AGCTGTCGGTGATGTGCTCTCCCTGTCCGTATCGACACCCAAACATCTCG
AGAAGATTGGCCTGTTGAAGGATTATGTGCGCGATGACGAGGCTCGCATC
AACCAGCTCTTCCTCACCGCCCTGGATAAGATCGTTTTCCTGCCCTTCGC
CTTCACCATGGACAAGTATCGCTGGTCGCTGTTCCGCGGTGAAGTCGACA
AGGCCAACTGGAACTGTGCCTTCTGGAAGTTGAGGGACGAGTACTCCGGC
ATTGAGCCGCCAGTTGTGCGAAGCGAAAAGGACTTTGATGCCCCGGCCAA
GTATCACATTTCCGCCGATGTCGAGTATCTGAGATACTTGGTCTCCTTCA
TCATTCAGTTCCAGTTCTACAAGTCCGCCTGCATCAAGGCTGGCCAATAT
GATCCCGACAATGTGGAGTTGCCTCTGGATAATTGCGATATCTACGGAAG
TGCTGCAGCTGGTGCTGCTTTCCACAACATGCTGTCCATGGGCGCCTCGA
AGCCATGGCCCGATGCACTGGAGGCCTTCAACGGCGAGCGCATCATGTCC
GGAAAGGCCATCGCCGAATACTTTGAGCCACTGCGCGTTTGGCTGGAGGC
GGAGAACATTAAGAACAATGTCCACATTGGCTGGACTACTTCAAATAAAT
GCGTCTCATCATAAAAGCTTTCTAGACCAT
BS30524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-RC | 1848 | CG8827-PC | 1..1848 | 17..1864 | 9240 | 100 | Plus |
| Ance-RB | 1848 | CG8827-PB | 1..1848 | 17..1864 | 9240 | 100 | Plus |
| Ance-RA | 1848 | CG8827-PA | 1..1848 | 17..1864 | 9240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-RC | 2048 | CG8827-RC | 96..1945 | 15..1864 | 9250 | 100 | Plus |
| Ance-RB | 2062 | CG8827-RB | 152..2001 | 15..1864 | 9250 | 100 | Plus |
| Ance-RA | 2004 | CG8827-RA | 94..1943 | 15..1864 | 9250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13906585..13907172 | 15..602 | 2940 | 100 | Plus |
| 2L | 23513712 | 2L | 13908024..13908590 | 967..1533 | 2835 | 100 | Plus |
| 2L | 23513712 | 2L | 13907599..13907963 | 603..967 | 1825 | 100 | Plus |
| 2L | 23513712 | 2L | 13908856..13909028 | 1675..1847 | 865 | 100 | Plus |
| 2L | 23513712 | 2L | 13908646..13908788 | 1532..1674 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 8524246..8524449 | 1409..1612 | 225 | 74 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:56:23 has no hits.
BS30524.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:12 Download gff for
BS30524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-RB | 81..1926 | 17..1862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:25 Download gff for
BS30524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-RA | 96..1941 | 17..1862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:57 Download gff for
BS30524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-RA | 96..1941 | 17..1862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:57 Download gff for
BS30524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13906587..13907172 | 17..602 | 100 | -> | Plus |
| 2L | 13907599..13907962 | 603..966 | 100 | -> | Plus |
| 2L | 13908024..13908590 | 967..1533 | 100 | -> | Plus |
| 2L | 13908648..13908788 | 1534..1674 | 100 | -> | Plus |
| 2L | 13908856..13909028 | 1675..1847 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:25 Download gff for
BS30524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13906587..13907172 | 17..602 | 100 | -> | Plus |
| arm_2L | 13907599..13907962 | 603..966 | 100 | -> | Plus |
| arm_2L | 13908024..13908590 | 967..1533 | 100 | -> | Plus |
| arm_2L | 13908648..13908788 | 1534..1674 | 100 | -> | Plus |
| arm_2L | 13908856..13909028 | 1675..1847 | 100 | -> | Plus |
BS30524.pep Sequence
Translation from 16 to 1863
> BS30524.pep
MRLFLLALLATLAVTQALVKEEIQAKEYLENLNKELAKRTNVETEAAWAY
GSNITDENEKKKNEISAELAKFMKEVASDTTKFQWRSYQSEDLKRQFKAL
TKLGYAALPEDDYAELLDTLSAMESNFAKVKVCDYKDSTKCDLALDPEIE
EVISKSRDHEELAYYWREFYDKAGTAVRSQFERYVELNTKAAKLNNFTSG
AEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSE
TGPIPMHLLGNMWAQQWSEIADIVSPFPEKPLVDVSAEMEKQGYTPLKMF
QMGDDFFTSMNLTKLPQDFWDKSIIEKPTDGRDLVCHASAWDFYLTDDVR
IKQCTRVTQDQLFTVHHELGHIQYFLQYQHQPFVYRTGANPGFHEAVGDV
LSLSVSTPKHLEKIGLLKDYVRDDEARINQLFLTALDKIVFLPFAFTMDK
YRWSLFRGEVDKANWNCAFWKLRDEYSGIEPPVVRSEKDFDAPAKYHISA
DVEYLRYLVSFIIQFQFYKSACIKAGQYDPDNVELPLDNCDIYGSAAAGA
AFHNMLSMGASKPWPDALEAFNGERIMSGKAIAEYFEPLRVWLEAENIKN
NVHIGWTTSNKCVSS*
BS30524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-PC | 615 | CG8827-PC | 1..615 | 1..615 | 3256 | 100 | Plus |
| Ance-PB | 615 | CG8827-PB | 1..615 | 1..615 | 3256 | 100 | Plus |
| Ance-PA | 615 | CG8827-PA | 1..615 | 1..615 | 3256 | 100 | Plus |
| Acer-PB | 630 | CG10593-PB | 32..622 | 23..614 | 1663 | 51 | Plus |
| Acer-PA | 630 | CG10593-PA | 32..622 | 23..614 | 1663 | 51 | Plus |
