BS30533.complete Sequence
3608 bp assembled on 2012-07-30
GenBank Submission: KX803172
> BS30533.complete
GAAGTTATCAGTCGACATGCTTAGCAGCAATACAAGAGGTGATTGTTCCG
ATACCGCAGAAGAGATGACCGTCGACAGCAGAGATTCCAAAGATCTGAGT
GCTCAGGATATAGGCGAGCAGAAGCAGCAGCAAATGGAGGACCAGTTGGA
GGATCAGTTGAACGATTCCAGAGACCCCCAAAACAACAATAACAATATCG
ATGACGACGCTGATGAAGATGCTGAGTTCGAGGAGCCAGAAAAGGCCAAT
CCCCAACAGGATCAGGATTTGGGAGAGACAGAGATGGAACAGGAACACGA
TCTTCAGCAGGAGGATCTTCAGCAGGAACTGCCTGCAAACAGCCCAAGCA
CTCCGCCCAGGAGTCCCAGCTCTCCCCAGCTGATTCCCAAGCTGGAACAG
CCCGCTACGCCGCCCTCGGAGCCAGAAGCCTCTCCGTGCCCCTCACCCTC
ACCATGTCCCACGCCCAAGTACCCCAAAGTGCGTCTGAATGCGCTCCTGG
CCTCAGATCCTGCCCTTAAGCCAGATGCCAAGGAGCTGACCCTGCCGGAC
TCTCGTCTCCTGGCTCCTCCGCCGCTCGTCAAGCCGGACACGCAAGCGCA
ACCGGAGGTAGCAGAACCTCTGCTAAAACCAGCCAGATTTATGTGCCTGC
CCTGTGGGATTGCATTCAGTTCGCCCTCAACTCTGGAGGCCCATCAAGCC
TACTATTGCTCTCATAGAATTAAGGACACGGACGAGGCTGGCAGTGATAA
GTCAGGGGCAGGAGGATCGGGAGCCACAGCTGGCGATGCAGCAGGGTTGA
CCGGAGGCTCCACCGAGCCACCAGCCAAAATGGCCAGGACAGGAAAGCAA
TATGGCTGCACCCAGTGCTCCTACAGCGCGGATAAGAAGGTATCCCTAAA
TCGCCACATGCGCATGCACCAGACTTCGCCAGCAGCTCCCACACTGGCCG
GCTTGCCAAGTCTTCTCCAGAACGGAATAGCGCCGCCGGGAGTTACGCCC
AATCCGATGGAGGATAGCTCTAGTCAACAAACCGATCGCTACTGCAGCCA
CTGTGATATCCGGTTCAACAACATCAAGACCTATCGAGCGCACAAACAAC
ACTACTGCAGTTCGCGGCGACCAGAGGGACAGCTCACGCCCAAGCCAGAC
GCCTCTCCGGGAGCAGGTTCCGGACCGGGTTCCGCAGGCGGATCCATAGG
AGTATCAGCCCAGGCGGCTACGCCCGGCAAGCTGAGTCCGCAGGCAAGGA
ACAAGACTCCGACTCCCGCAATGGTCGCCGTCGCAGCTGCAGCAGCGGCT
GCCGCTGCCTCCCTCCAGGCCACGCCGCATTCGCATCCACCTTTCCTGGC
ACTGCCCACCCACCCGATCATAATTGTGCCCTGCTCGCTGATCCGTGCAG
CTAGCTTTATTCCAGGCCCACTGCCCACGCCGAACTCGGGAATCGTGAAT
CCTGAAACCACCTGTTTTACCGTGGACAACGGAACGATTAAACCACTGGC
CACTGCCCTAGTTGGCGCCACCTTAGAACCCGAACGCCCTTCAGCTCCAT
CATCTGCTGCTGAGGCCACAGAAGCCAAGAGTAGTCCTCCGGAGCCCAAG
CGAAAAGAGGCAGGGTTAACTAGAGAATCTGCGCCTCTCGATCTCTCGCT
GCGTCGATCGCCAATCACCCTGAATTCACTGAGCTTGCGTCAGCGCCAAC
TGCGGAATGCTCTCTTAGATGTGGAAGAAGTACTCCTTGCCGGCGTAGGA
ACCGGCAAGGAGAACGTTGAGACTCCGAGAGGAGGTGGAAGTGTGACTCC
CGAGCAAATCGTTTGCGCTCCCTCCCTGCCGAGCAGTCCTTCGATGAGTC
CCTCGCCCAAAAGACGAGCCATCAGTCCACGCAGTTCCGGGGCTGGTAGC
GCCTCCTCCATGTCACCACCTGGTCTCAATGTGGCTGTTCCCCATCTGCT
CGACATGCGCTCCATGCTACCTGCGGACTTTGGACTCTCCGAGTCGCTGT
TGGCCAAAACCAACCCGGAACTGGCTCTGAAACTGGCGGCGGCAGCGGCC
GCAGCTGCTGTGGCGGGCAGTAGTGGAGCAGCAGCCTTCCCGCCCGCTTC
TCTTCCTGCCCAAACTAGTAGTGGGAATCCGGGTAGTGGAGGATCGGCAG
GTGGCGCCCAGCAGCCTCAGATCTATGTGAAAAAGGGCGTGTCCAAGTGC
ATGGAGTGCAATATTGTGTTTTGCAAGTATGAGAACTACTTGGCACACAA
ACAGCATTATTGCTCGGCAAGAAGCCAAGAAGGTGCGAGTGAAGTGGATG
TCAAGTCGGCCGTTTCACCATCCATCGCTGGAGCAGGAGGACTGGGAGCC
GGAGCTGCAGAGGCTGCTTCGTCGGTGGAAACCACACCGGTGGCATATCA
ACAGTTGATCTGCGCCGCCTGCGGAATTAAGTACACTTCCCTGGACAACC
TGCGAGCCCATCAGAACTACTATTGCCCCAAGGGAGGAGCAGTTGCTGCC
CCTGCCGCGACGCCCACGGATCCTGGCCAACTGGGCATGCCAAAGGAGAA
GTGCGGAAAGTGCAAGACATTGCATGAAATTGGTCTGCCTTGTCCACCAC
CCGTTGCGAATCCTCTCGCAGCGCCGACAGTCAATCCGCAACCCGCCACC
AATAGTCTGAACAAGTGTCCTGTTTGCGGGGTAGTGAGTCCCACAGCAGC
ACTGGCCAAGAAACACATGGAGATGCACGGAACAGTAAAGGCATACCGCT
GCAGCATCTGCCAGTACAAGGGGAACACTCTTCGCGGCATGCGCACCCAC
ATTCGAACCCATTTCGACAAGAAGACTAGCGACGTAAACGAGGAGCTATA
CATGACCTGCATCTTTGAAGAGGATGCTAGCGCGCTGAGTCAGGAACTGG
TTACTCCAACAGGGGCATCTACCACAACTGGACACGATTCCATGGATCAT
CCCTCGCAGATGTTCAACTGTGATTACTGCAACTATGTCTCCACCTACAA
GGGCAATGTGCTGCGCCACATGAAGCTGATGCATCCCCATGTGGCCATCA
ACTCTCCCTCCATTTCCCCCGACACCAGAGATCAAGATGTGACTTCCAAC
CCCACTACCAACCAACACTCGAATTCCGATGTATCCAACGGTGAAGCACC
CAGTTTCCACATTAAATCGGAGCCTCTGGATCCACCACCGACTGTGAATC
TGGTGCACGAGAACAACAACTCCCCGATCGCCACGCCACATATTAAGGCT
GAGCCAATCGAAGTCGGAGCGGATGCTGCGCCCGGCGGGCTGGTTCCGCC
GATGACTTCTCCGCTGGGAAACAGCAGCAGCGTGGCTGCCGCAGCAGCTG
CCGCCGCCGAGGTGATGAAGAAGTACTGCTCAACCTGTGACATATCCTTC
AATTACGTGAAGACCTACCTGGCTCACAAGCAGTTCTACTGCAAAAACAA
GCCCATTCGCCCCGAGGCCAGCGACAGCCCCAGTCCGAATCACCTGGGCG
GAGGCGTTGCCGTGGGCCTGGGCATTGGCGGCCTGGTCGGCGGACACGGC
CAGCAGAAGAACAAGGAAAACCTGCAGGAGGCGGCCATTTGAAAGCTTTC
TAGACCAT
BS30533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ush-RC | 3639 | CG2762-PC | 1..3576 | 17..3592 | 17880 | 100 | Plus |
| ush-RA | 3576 | CG2762-PA | 1..3576 | 17..3592 | 17880 | 100 | Plus |
| ush-RE | 3597 | CG2762-PE | 42..3597 | 37..3592 | 17780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ush-RC | 4482 | CG2762-RC | 303..3878 | 17..3592 | 17880 | 100 | Plus |
| ush-RA | 4752 | CG2762-RA | 573..4148 | 17..3592 | 17880 | 100 | Plus |
| ush-RE | 6084 | CG2762-RE | 1953..5508 | 37..3592 | 17780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 537861..539254 | 1622..3015 | 6955 | 99.9 | Plus |
| 2L | 23513712 | 2L | 536021..536966 | 82..1027 | 4730 | 100 | Plus |
| 2L | 23513712 | 2L | 539515..539956 | 3151..3592 | 2210 | 100 | Plus |
| 2L | 23513712 | 2L | 537037..537432 | 1028..1423 | 1980 | 100 | Plus |
| 2L | 23513712 | 2L | 537549..537749 | 1423..1623 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 539309..539452 | 3010..3153 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 525390..525436 | 37..83 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1065..1157 | 117..208 | 129 | 61.3 | Plus |
BS30533.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:14 Download gff for
BS30533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ush-RA | 572..4146 | 17..3591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:33 Download gff for
BS30533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ush-RA | 573..4147 | 17..3591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:01 Download gff for
BS30533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ush-RA | 573..4147 | 17..3591 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:01 Download gff for
BS30533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 524038..524059 | 17..38 | 100 | -> | Plus |
| 2L | 525392..525436 | 39..83 | 100 | -> | Plus |
| 2L | 536023..536966 | 84..1027 | 100 | -> | Plus |
| 2L | 537037..537431 | 1028..1422 | 100 | -> | Plus |
| 2L | 537549..537749 | 1423..1623 | 100 | -> | Plus |
| 2L | 537863..539249 | 1624..3010 | 100 | -> | Plus |
| 2L | 539310..539452 | 3011..3153 | 100 | -> | Plus |
| 2L | 539518..539955 | 3154..3591 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:33 Download gff for
BS30533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 524038..524059 | 17..38 | 100 | -> | Plus |
| arm_2L | 525392..525436 | 39..83 | 100 | -> | Plus |
| arm_2L | 536023..536966 | 84..1027 | 100 | -> | Plus |
| arm_2L | 537037..537431 | 1028..1422 | 100 | -> | Plus |
| arm_2L | 537549..537749 | 1423..1623 | 100 | -> | Plus |
| arm_2L | 537863..539249 | 1624..3010 | 100 | -> | Plus |
| arm_2L | 539310..539452 | 3011..3153 | 100 | -> | Plus |
| arm_2L | 539518..539955 | 3154..3591 | 100 | | Plus |
BS30533.pep Sequence
Translation from 16 to 3591
> BS30533.pep
MLSSNTRGDCSDTAEEMTVDSRDSKDLSAQDIGEQKQQQMEDQLEDQLND
SRDPQNNNNNIDDDADEDAEFEEPEKANPQQDQDLGETEMEQEHDLQQED
LQQELPANSPSTPPRSPSSPQLIPKLEQPATPPSEPEASPCPSPSPCPTP
KYPKVRLNALLASDPALKPDAKELTLPDSRLLAPPPLVKPDTQAQPEVAE
PLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRIKDTDEAGSDKSGAGG
SGATAGDAAGLTGGSTEPPAKMARTGKQYGCTQCSYSADKKVSLNRHMRM
HQTSPAAPTLAGLPSLLQNGIAPPGVTPNPMEDSSSQQTDRYCSHCDIRF
NNIKTYRAHKQHYCSSRRPEGQLTPKPDASPGAGSGPGSAGGSIGVSAQA
ATPGKLSPQARNKTPTPAMVAVAAAAAAAAASLQATPHSHPPFLALPTHP
IIIVPCSLIRAASFIPGPLPTPNSGIVNPETTCFTVDNGTIKPLATALVG
ATLEPERPSAPSSAAEATEAKSSPPEPKRKEAGLTRESAPLDLSLRRSPI
TLNSLSLRQRQLRNALLDVEEVLLAGVGTGKENVETPRGGGSVTPEQIVC
APSLPSSPSMSPSPKRRAISPRSSGAGSASSMSPPGLNVAVPHLLDMRSM
LPADFGLSESLLAKTNPELALKLAAAAAAAAVAGSSGAAAFPPASLPAQT
SSGNPGSGGSAGGAQQPQIYVKKGVSKCMECNIVFCKYENYLAHKQHYCS
ARSQEGASEVDVKSAVSPSIAGAGGLGAGAAEAASSVETTPVAYQQLICA
ACGIKYTSLDNLRAHQNYYCPKGGAVAAPAATPTDPGQLGMPKEKCGKCK
TLHEIGLPCPPPVANPLAAPTVNPQPATNSLNKCPVCGVVSPTAALAKKH
MEMHGTVKAYRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEELYMTCIF
EEDASALSQELVTPTGASTTTGHDSMDHPSQMFNCDYCNYVSTYKGNVLR
HMKLMHPHVAINSPSISPDTRDQDVTSNPTTNQHSNSDVSNGEAPSFHIK
SEPLDPPPTVNLVHENNNSPIATPHIKAEPIEVGADAAPGGLVPPMTSPL
GNSSSVAAAAAAAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKPIRPE
ASDSPSPNHLGGGVAVGLGIGGLVGGHGQQKNKENLQEAAI*
BS30533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ush-PC | 1212 | CG2762-PC | 1..1191 | 1..1191 | 6260 | 100 | Plus |
| ush-PA | 1191 | CG2762-PA | 1..1191 | 1..1191 | 6260 | 100 | Plus |
| ush-PE | 1198 | CG2762-PE | 14..1198 | 7..1191 | 6229 | 99.9 | Plus |
| ush-PB | 1198 | CG2762-PB | 14..1198 | 7..1191 | 6229 | 99.9 | Plus |
| ush-PD | 1175 | CG2762-PD | 1..1175 | 17..1191 | 6177 | 100 | Plus |
