BS30534.complete Sequence
2228 bp assembled on 2012-07-30
GenBank Submission: KX805268
> BS30534.complete
GAAGTTATCAGTCGACATGGACCGGCGAGAGGATGCTCTGCTACAGGCCC
TCCAAACGAACGCCAGCGAGACAGAGCGCTGGGAAGCCTTCAAGCGCGAT
AATGAGAGCACCATCCGGAACTTGGACAAGTTCGCAAAGAATCTCAGCGT
GGAGGTTATGGTGCCCATTGGACGGAAGGCGCTGATGCCCGGCGAGCTGA
TCCACACCAACGAGCTTCTGGTGGGTCATTACGAGGGCTACTTCTCCGCC
TGCTCCTCCCACAAGGCCAAGGAGATCTGCCAGTACCGCCTGAAGCTGGC
CGAGGAGCAGCTGAAGAAGCTGGCCGTGGAGAACGATCTGTGGCAGAAAA
AACTCCACACTCCATTTGCGGAGGGGGCGGTTCCCAGTGGCGACCAAGTA
GAAATTGTGGAGGATTTCAACGAGGAGTCTCACAACAAGTGGTTGGCGGA
GCACAGAAAGCGAATGCGACAGCAAAAGCAGAAGGAGCGCCTCGAACGGG
AGGCGGAACCTGTGAAGAAAGATAATGAAGTGCTGCGGAAGCTAGAAGAG
CGAGAAATGATGGAGGAACTTGGTCTAGATCCAGATAATATCGACGAGGA
TCAGCTGCACGATATGCTGAATCAAGAACCTCTGAAATCCACCAACGAAA
GTAGTCCTAAATCCTTAACCCAGGAAGAGGAGGATGAGCTGTGGAAGAAG
CTGGAAGCCGAGGAGCAGAACGAAGCCGATGAGCTCAGCTCAGAAGCAGA
AGAAAGCCTTAAAACAACGGATAACCTAGTGCGCCAGCTCATGTCCGGAG
AAACAGAAACTCCATCTTCCAAAAAACGCACTGCAGGAACCAATAGAAAC
GTGGAAATACAGGATCCCATATCGGAAGATGATGGTGATGATGATGATGA
GGGTGACCAGGAGGAAGAGGTGCGAACCATACGGGAGCAGATGTCGCTGC
TACCCAACGAAGATCGTGAGCCGTTCCTCAGAGCTCAACTGCATGTACTT
AAAGCAAAAATGAGGAAGATACAAAAGGTCAACTTTATAAGCGATGAGCT
GATTCACTTGATGAATGTGGTGGTCATGCTAGAGGACGACCTACAGGACT
TGGTATTTGAGCAGGAACTGGAGGCCAGCGAGGAAGAGGAGGAGGTTGTC
GAAAACAATCATCTTCCAGATGAGCCAAGCAAAGAGCTTTCGACTGTATC
TGAATCCAGCACAAATAAACGTCGCATTTCGTTTGCCCTCGACGACGAAA
AACTTGAATTCAGAAGGGAGGAGACCGTTGCCGAAATGTTGCCCAATGCG
AAAAAGAACTCGAGGGATATCATCAAGCTAAATGCACCTCTTAAACCGGC
AGGAGATCCACAACCCGCATCCATTAAAACAAAACGTCAAACAACCCAGG
ATATCTTGCAAAAAGTAGAACGAAACATTGAGTTTGTCAAGGAAAACCAG
AGTGTCCAGGACTTCGATTTACTCAATCGAATTATGGAAGAGTCTACGGG
ACTCATAAACACTTTACACATAAGTTTCACACATTCCGGTGCCATACCTT
CGCCCAGTAGTGATCAAAGCGATGGCATACCTGGAAAGCCCTCTGATTTC
TATGTGAGGTATGAGAAGGACCGGGCGCGGCCTAATGATTCGTTTCCTAT
CTATGTGAACGGCTTTGAAGGCGAGGAGCACGTTAAAGTTCCCATAATGA
GCGAAGCTGCACGTGGATCAGCCTATGAAGATCCCAGAAGTCAGTTCTCC
AAGCCCAATTCTTCGGAAATATGTTTCACACATTCCGGCTCCATAACTCC
GACCAGTAATGATCAAAGTGATGATATACCTGGAAATCCATTTGATTTCT
ATGAGAAGTATGAGAAGGACCGAGCGAAGTTCTCCAAGTCCAATTCCTCG
GAGGGCGACGCTACTGACCCTGAATCAGCGACCAAATCGATCCTACGAAA
CAAATCTGCTGTGGACCTGGAGCCGCATAATGTCAACCAGCAGCCCAAGA
AGGGCAGGAAGGTCCGGAATCAAAAGAAGAAGGAGCGCACCCTAGACGAT
GACCTGCGCGACATGAGCGCCTACCAAAAGGTCATGCATGATCTTGTGGA
GAAGGAGCCGACTGCACCGGAGCCTCTGCCACCGGGCAAGTTCATCGACT
CGCATGCGCCAAAGAAGCGGGTTAGCCGCTTCAAGGAGCAGCGAGCCCTT
AACAAAACGTAGAAGCTTTCTAGACCAT
BS30534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uri-RA | 2196 | CG11416-PA | 1..2196 | 17..2212 | 10980 | 100 | Plus |
| uri-RA | 2196 | CG11416-PA | 1504..1611 | 1769..1876 | 300 | 85.2 | Plus |
| uri-RA | 2196 | CG11416-PA | 1753..1860 | 1520..1627 | 300 | 85.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uri-RA | 2351 | CG11416-RA | 33..2228 | 17..2212 | 10980 | 100 | Plus |
| uri-RA | 2351 | CG11416-RA | 1536..1643 | 1769..1876 | 300 | 85.2 | Plus |
| uri-RA | 2351 | CG11416-RA | 1785..1892 | 1520..1627 | 300 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24566041..24567439 | 346..1744 | 6995 | 100 | Plus |
| 2R | 25286936 | 2R | 24567489..24567959 | 1742..2212 | 2355 | 100 | Plus |
| 2R | 25286936 | 2R | 24565682..24565985 | 43..346 | 1520 | 100 | Plus |
| 2R | 25286936 | 2R | 24567215..24567322 | 1769..1876 | 300 | 85.2 | Plus |
| 2R | 25286936 | 2R | 24567516..24567623 | 1520..1627 | 300 | 85.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:56:34 has no hits.
BS30534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:14 Download gff for
BS30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 28..2223 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:30 Download gff for
BS30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 33..2228 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:00 Download gff for
BS30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 33..2228 | 17..2212 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:00 Download gff for
BS30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24565586..24565615 | 17..46 | 100 | -> | Plus |
| 2R | 24565686..24565984 | 47..345 | 100 | -> | Plus |
| 2R | 24566041..24567439 | 346..1744 | 100 | -> | Plus |
| 2R | 24567492..24567959 | 1745..2212 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:30 Download gff for
BS30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20453209..20453507 | 47..345 | 100 | -> | Plus |
| arm_2R | 20453109..20453138 | 17..46 | 100 | -> | Plus |
| arm_2R | 20453564..20454962 | 346..1744 | 100 | -> | Plus |
| arm_2R | 20455015..20455482 | 1745..2212 | 100 | | Plus |
BS30534.pep Sequence
Translation from 16 to 2211
> BS30534.pep
MDRREDALLQALQTNASETERWEAFKRDNESTIRNLDKFAKNLSVEVMVP
IGRKALMPGELIHTNELLVGHYEGYFSACSSHKAKEICQYRLKLAEEQLK
KLAVENDLWQKKLHTPFAEGAVPSGDQVEIVEDFNEESHNKWLAEHRKRM
RQQKQKERLEREAEPVKKDNEVLRKLEEREMMEELGLDPDNIDEDQLHDM
LNQEPLKSTNESSPKSLTQEEEDELWKKLEAEEQNEADELSSEAEESLKT
TDNLVRQLMSGETETPSSKKRTAGTNRNVEIQDPISEDDGDDDDEGDQEE
EVRTIREQMSLLPNEDREPFLRAQLHVLKAKMRKIQKVNFISDELIHLMN
VVVMLEDDLQDLVFEQELEASEEEEEVVENNHLPDEPSKELSTVSESSTN
KRRISFALDDEKLEFRREETVAEMLPNAKKNSRDIIKLNAPLKPAGDPQP
ASIKTKRQTTQDILQKVERNIEFVKENQSVQDFDLLNRIMEESTGLINTL
HISFTHSGAIPSPSSDQSDGIPGKPSDFYVRYEKDRARPNDSFPIYVNGF
EGEEHVKVPIMSEAARGSAYEDPRSQFSKPNSSEICFTHSGSITPTSNDQ
SDDIPGNPFDFYEKYEKDRAKFSKSNSSEGDATDPESATKSILRNKSAVD
LEPHNVNQQPKKGRKVRNQKKKERTLDDDLRDMSAYQKVMHDLVEKEPTA
PEPLPPGKFIDSHAPKKRVSRFKEQRALNKT*
BS30534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uri-PA | 731 | CG11416-PA | 1..731 | 1..731 | 3759 | 100 | Plus |
