BS30539.complete Sequence
4286 bp assembled on 2012-07-30
GenBank Submission: KX800672
> BS30539.complete
GAAGTTATCAGTCGACATGCACATGCGGCTGCACTTGGTGCGCTTTATGT
TCATAAATCTGCTGCTGAGCTGCTGTTTCTGGTTGTACGACAATGTGGCA
GCTGCAGACTCACAAATCCCAAGCAGGGCTGGCGACTCAGCCAAGGATGC
AGCTCGGAAAACCCACATAGAGCCCGAGGAACCGGCGGCGCCTCCAAGGC
CGGAACCTCCACCCCCGCCACTCCACAACGGAGCTGGAGTTTTGTTGCCC
TCTGCACAGGAGGGCGTGCCCATCGTTGCCACATCCTCCTCCTCCTCCTT
CGCCGAAGTGCCCCAAACTGGCAATCGGCCAATATCTGGGGACACGTCAG
TGCCTGTAAAGGAGCTGCCCGCGCTATCTGACCAGCAGCGGACCAAAAGC
CATAGTGAATATATTAGTGAAATCGATTTAGCCGCTGATGTGGGTGGCGC
GTCCTCATCCACCGCCCAAGTGCCAAATAATCAATTAAATTATAATAAGC
GTAGCAGTGCCGGTAAAGTGCATAGATTTAGTGAATCGCAGCAATTAGAC
CAACCAAAGCAATTGGAGCAGGAGGAGCCGGCGACGGGGCAGCCGAAAGC
GCCGGAGCTGCAGGAACCACCACAACTACCGCAGGCGGAAGAAAGTTTTC
CCGAGATCATTACGGAGCTGCCAGCTGTCACAATAACAGAGCTCCCGCTG
GATCGAGTTATGAACCGCCTGGATTCGGTTATACTTGACGGGTCCCCGGC
CACAGCCGGAAACCACAGCGACGAGGAGCAGCATCAGCAGCAGCAGCAAC
CTCATGAGGATCAGCCCATGCAAGTTTCGGAGGCTGACGAGGAAGTTCCT
CAAAAAGACGAGCAAATGCCGAAGATAAACGATCCTGGCGGAGGCATTCA
AGTGGAAGGAATGGTCACACCAGAAGCTGCGACAGTGGGCGAAACCCAAG
AGAGCAGCGAGGAGTTGCAGCCCGGATCAGCTGCATTCAATGGGACAGAG
GGCACGGCTAACTTGACGAATGCCAACGAGGAAGTGCCCATGCCAGTGTT
TTCCGAGTGGGCGCAGAAGCAAATGGAGGCGGAGGCCAGCAGGGAGCAGG
CCATGGAGTTGGAGCAGCAGGTGGTAAATAAGTCCGCCCAACGCAAGAAC
AACACTGGATCTTCCAGTGGAAAGCCGCCGACGCTGAAGCTGCGCTCCAA
GAACTACGCCTCGCCGGACTGCGGAGCCAAGATCATCGCACACAATTCCG
AGTCCAAGCATACGGAGGCTGTGCTAACCCAATCCACCGATGAGTACATG
CTGAGTACTTGCGAAAGTCGGATTTGGTTCGTGGTGGAGCTGTGTGAGGC
CATTCAGGCGCAGAAGGTGGACGTGGCCAACTATGAGCTGTTCAGTTCGT
CCCCCAAAAACTTTACGGTAGCCGTTTCTAAACGATTCCCCACACGAGAC
TGGAGCAATGTGGGACGCTTTGCGGCGGAGGACAAGCGAACAATTCAGAC
TTTTGAGCTTCATCCACACTTATTCGGAAAATTCGTGCGCGTCGATATCA
CGTCGCACTACGCCAACGAGCACTTTTGTCCGCTGTCGTTGTTCCGAGTG
TTTGGCACCTCCGAGTACGAGGCTTTCGAAACGGAAATCCGACCAAGCGA
TGACCTGGACGATTTCTACGACGACTACGGCGCTCAAGAACAGAAGGCAG
CCGTGGGCAGTGGTGGAAACATCTTTCAAAGCGCCTCGGATGCAGTGATG
CAAATGGTCAAGAAGGCCGCAGAGGTTCTCGTAAAGCCCACAAAGGCTCT
AAAATGGTCAGAGGAATCGGTGCTCTGTCAAACGCCAGCATTTGAAGCCT
TCAGCTGTATCAATTGTAATACCACCCTGGTCGAGAGGATTAACAGTCTT
TTATCCTGCCAGTTCCAGCAGCTGCAGGCACTCCTCAGTCTTAGTCACTT
ACGGTCAGATCTTCTAAACAGTCGCGTGTGTCAGGAGGAGTTCGGCATAA
GCCTTACGGGCTCGGAGTTCGCCAGTAAAATGGGTAAGGAGCAGAGCTAT
TTCCTTAGTATGTTGCCAGCGGAGCACGTGGGAGCCATGTGTAAACTCAT
TCAGGCGGAGCAGAATGTGACTGACCATAACCATACAAAGGCGCCTTCTC
TGAAGCAGCACGTAAGCTCACCAGAACCAGTGCAGGATAACGCCACTGCT
ACGGGTGTTCGGCAGGATTGTGAGAACAGTAAAACGCCCACAAAGGAACC
GCTTACACCAAGTCTTGAGGTTGTGGTGCCCGAGGTGAGCCAAGAAGTGC
CTTCAATGGAAGACCAGTCGTCGACCTCCAGCGAAACAGTCTCCACAACG
AACTCCACGCCTGCCGACGTCAATATATTCAATATGCCGTCGGAACCTGA
GGAAGTGGTTGTCAAAGTTCAGCTTCCTCCGGAGCCAACACTTCCAACAA
CTTTGCAGCCCAGCGATGTGGAATCGTTCACTGACGCTCCTAGCACAAAT
GCACTCCCTGGCTCTAGTGAAGCTGTAGCGAACGGAGATCTGGGTATGGA
GGAGGGTAATCCGGCTAACTGGGACGGCATTGACAACCTACTGACCACGA
CGGTGGCTTCGATAACCGCTGGCGGAGGTGCAGCTGCCGCTGCAGCCGCC
GTGGTGAACGGAAACGCCAACATCGGAGGAGCCGGCATTGTCGGAGCAGG
AGGACCAGCCAGTCTATCCAGTGTTAACATGCAGCAGAAGCTGACGAATG
GAGCCCAGTCGGAGAGTGTGTTCATCAGGCTCTCCAATCGCATAAAGGCG
CTCGAACGAAACATGTCGCTTTCTGGACAATACCTGGAGGAGCTCTCGAG
GCGTTACAAGAAGCAAGTGGAGGAGCTGCAGCAGACGCTGACACAACAGA
CGCTTACGGTGCGCCAACTGGAGGATCAAAGCAGGCGGTACGTAGAGCAG
GAGCAGCTGTACCAGCAGCACAGCGCGGAGTTGGCCGGCGAGGTGAGGGC
ATTGTCGTATCAGGTGCAGGCCTGCATCCTGGTCATCATCATTGTGGGCA
CCTGCATCTTCCTGATGCTCGTCCTGGGCACTGTCTACTATCGCAAGCTG
CGACGCCAGCAACAACAGCTACTGAAGAAGGACCAGGCGGGCCATCCACC
TGTGGCTGCGAAACCAAAACTGGATCGCCGTAAGTCCTATGAACAGACGC
CAAATCAGAGCACACCCAAGCAACGGCGTCCAAGCGAGGAGGCCATGCTC
ATTCTGAAGGAGTGCGGGGACAGCAACATGCAGGAGTTGGATCCACCAAG
CCGTCAGCGTAAAATTTCAGTTTGCTATGGCAGCAACAATAACATAGCCG
CCAATATGGCGATTGCCAACACAAATGGCGGTGCAAGTGTCCGAAATTCT
CTGCACAGGCGAAAGGGAGCCAAGCACTCGTGGCACAACAGTCTGGATAC
CACGGAGACGTCCTGCGGCGAGCAAACGGACAAGTTCTTCGATGTGGACA
CCCTTAAAAGCATAAAGCAAAGCTGCGGTAAGCCGGGAAAGAAAAAATCC
CTTCAGCAACTGAAACCATTGGGTCTTAAGCGCCAGGAATCCGCGCCAGC
CACCTATACGCCGGATTTGCAAGCTGAAGAACCAGCCACGCAGAGCGACT
TTGACGAGAGCCTAATGCTTGACGATGATGATCTAGCTAACTTTATACCC
ACCAGCGATTTGGCCTACAATGAGTTTATGCCAGAAGGACCCTCGGGCTA
CCAGATTGTGGACACAGTAGACGGAAAACCTGGCAAAGAGCCAGGCACCA
AGAAATCTAGACGCCTGTCCTCGCCGGCATTCTTTAAGTCGCCCTTTAGC
AAGAGCAAAAACAAGGGCTACAGCTTTAATGGCGTCAAAAACAGCCATGC
GGTGCACGAGCCCACATCCTGGGAGTGGTACCGACTCAAACGAAGCGAAA
AGCACCAGCAGCAACAGCAGGCGAAGCTGGTCAGCAAGAGTCTGCCCAGC
GCCAGTCTGGACAGCTCGTCGCTGTCGGAGGTAAACTTCCCACTTAGCTC
CAGCACCGCCACCACACAGAATTCGTTTCGCATACTGGGCGAGGCCATTC
TGTCCTCCGGGGAGGGACGCATCACCCCGAATGGGAATGGCAACGCAATG
TCTGGCGGTCTGGCAAGCAGCAGTAGTGGTAGTGGCAGTGGTGGCAGCAC
TACCTCATCCACCACCAAGAAGAAACAGCGCGCCCTTAACAACCTCTTTC
GCAAGGCCTTCGATTTTTAAAAGCTTTCTAGACCAT
BS30539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31678-RB | 4254 | CG31678-PB | 1..4254 | 17..4270 | 21270 | 100 | Plus |
| CG31678-RE | 3759 | CG31678-PE | 133..3759 | 644..4270 | 18135 | 100 | Plus |
| CG31678-RC | 3759 | CG31678-PC | 133..3759 | 644..4270 | 18135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31678-RB | 4987 | CG31678-RB | 253..4506 | 17..4270 | 21270 | 100 | Plus |
| CG31678-RE | 4564 | CG31678-RE | 457..4083 | 644..4270 | 18135 | 100 | Plus |
| CG31678-RC | 4496 | CG31678-RC | 389..4015 | 644..4270 | 18135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20661989..20663931 | 2798..856 | 9715 | 100 | Minus |
| 2L | 23513712 | 2L | 20659613..20660386 | 4270..3497 | 3870 | 100 | Minus |
| 2L | 23513712 | 2L | 20660449..20661150 | 3497..2796 | 3510 | 100 | Minus |
| 2L | 23513712 | 2L | 20674995..20675572 | 645..68 | 2890 | 100 | Minus |
| 2L | 23513712 | 2L | 20663998..20664211 | 857..644 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 20675637..20675689 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:57:07 has no hits.
BS30539.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:16 Download gff for
BS30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31678-RB | 253..4504 | 17..4268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:42 Download gff for
BS30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31678-RB | 253..4504 | 17..4268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:08 Download gff for
BS30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31678-RB | 253..4504 | 17..4268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:08 Download gff for
BS30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20659615..20660385 | 3498..4268 | 100 | <- | Minus |
| 2L | 20660449..20661148 | 2798..3497 | 100 | <- | Minus |
| 2L | 20661990..20663929 | 858..2797 | 100 | <- | Minus |
| 2L | 20663998..20664209 | 646..857 | 100 | <- | Minus |
| 2L | 20674995..20675570 | 70..645 | 100 | <- | Minus |
| 2L | 20675637..20675689 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:42 Download gff for
BS30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20659615..20660385 | 3498..4268 | 100 | <- | Minus |
| arm_2L | 20660449..20661148 | 2798..3497 | 100 | <- | Minus |
| arm_2L | 20661990..20663929 | 858..2797 | 100 | <- | Minus |
| arm_2L | 20663998..20664209 | 646..857 | 100 | <- | Minus |
| arm_2L | 20674995..20675570 | 70..645 | 100 | <- | Minus |
| arm_2L | 20675637..20675689 | 17..69 | 100 | | Minus |
BS30539.pep Sequence
Translation from 16 to 4269
> BS30539.pep
MHMRLHLVRFMFINLLLSCCFWLYDNVAAADSQIPSRAGDSAKDAARKTH
IEPEEPAAPPRPEPPPPPLHNGAGVLLPSAQEGVPIVATSSSSSFAEVPQ
TGNRPISGDTSVPVKELPALSDQQRTKSHSEYISEIDLAADVGGASSSTA
QVPNNQLNYNKRSSAGKVHRFSESQQLDQPKQLEQEEPATGQPKAPELQE
PPQLPQAEESFPEIITELPAVTITELPLDRVMNRLDSVILDGSPATAGNH
SDEEQHQQQQQPHEDQPMQVSEADEEVPQKDEQMPKINDPGGGIQVEGMV
TPEAATVGETQESSEELQPGSAAFNGTEGTANLTNANEEVPMPVFSEWAQ
KQMEAEASREQAMELEQQVVNKSAQRKNNTGSSSGKPPTLKLRSKNYASP
DCGAKIIAHNSESKHTEAVLTQSTDEYMLSTCESRIWFVVELCEAIQAQK
VDVANYELFSSSPKNFTVAVSKRFPTRDWSNVGRFAAEDKRTIQTFELHP
HLFGKFVRVDITSHYANEHFCPLSLFRVFGTSEYEAFETEIRPSDDLDDF
YDDYGAQEQKAAVGSGGNIFQSASDAVMQMVKKAAEVLVKPTKALKWSEE
SVLCQTPAFEAFSCINCNTTLVERINSLLSCQFQQLQALLSLSHLRSDLL
NSRVCQEEFGISLTGSEFASKMGKEQSYFLSMLPAEHVGAMCKLIQAEQN
VTDHNHTKAPSLKQHVSSPEPVQDNATATGVRQDCENSKTPTKEPLTPSL
EVVVPEVSQEVPSMEDQSSTSSETVSTTNSTPADVNIFNMPSEPEEVVVK
VQLPPEPTLPTTLQPSDVESFTDAPSTNALPGSSEAVANGDLGMEEGNPA
NWDGIDNLLTTTVASITAGGGAAAAAAAVVNGNANIGGAGIVGAGGPASL
SSVNMQQKLTNGAQSESVFIRLSNRIKALERNMSLSGQYLEELSRRYKKQ
VEELQQTLTQQTLTVRQLEDQSRRYVEQEQLYQQHSAELAGEVRALSYQV
QACILVIIIVGTCIFLMLVLGTVYYRKLRRQQQQLLKKDQAGHPPVAAKP
KLDRRKSYEQTPNQSTPKQRRPSEEAMLILKECGDSNMQELDPPSRQRKI
SVCYGSNNNIAANMAIANTNGGASVRNSLHRRKGAKHSWHNSLDTTETSC
GEQTDKFFDVDTLKSIKQSCGKPGKKKSLQQLKPLGLKRQESAPATYTPD
LQAEEPATQSDFDESLMLDDDDLANFIPTSDLAYNEFMPEGPSGYQIVDT
VDGKPGKEPGTKKSRRLSSPAFFKSPFSKSKNKGYSFNGVKNSHAVHEPT
SWEWYRLKRSEKHQQQQQAKLVSKSLPSASLDSSSLSEVNFPLSSSTATT
QNSFRILGEAILSSGEGRITPNGNGNAMSGGLASSSSGSGSGGSTTSSTT
KKKQRALNNLFRKAFDF*
BS30539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31678-PB | 1417 | CG31678-PB | 1..1417 | 1..1417 | 7278 | 100 | Plus |
| CG31678-PE | 1252 | CG31678-PE | 45..1252 | 210..1417 | 6193 | 100 | Plus |
| CG31678-PC | 1252 | CG31678-PC | 45..1252 | 210..1417 | 6193 | 100 | Plus |
