BS30543.complete Sequence
536 bp assembled on 2012-07-09
GenBank Submission: KX806441
> BS30543.complete
GAAGTTATCAGTCGACATGGTTTATTGCCCGTACAACAAGGAGCACAAAA
TGCTGCGCAAGAAGCTCCAGCAGCACATCTTAAAATGCCGTGTGATCTAC
AAAGACACGGTGGAACTTATGGTTTGTCCCTTCAATAGTTCCCATTTGAT
ACCAGAGCCCCAGTTCTTTCAACACACCCAATCGTGCGAGGATCGAAACA
TTATAGTACACTATCAGACCAGCGCTCCTGCTGTCCTCAGCGAAGACACC
AGACACGCGAAGATCGAGTCCGAGGAGAACTGGGATGACGACGAGAGTGT
GCCCGATTACGATCCTCAGGTCTACTGTTCCAGGGCCAACATAGTGAGAG
AGCCCAATGGGTTGTTTCCCGCCCAGCGAAGGGCTTTCATCGAGCAGGAA
AAACGTCGTCACTTTGGCGAGGATTACGAGGAGGAGAAGAAGCCGCGGAA
GGCCAAGGCTCGCGCGGATCTTCGTCCCACTCCCTACGAGCACAGGAGGC
CATACTCAAGGCGCCAGTAGAAGCTTTCTAGACCAT
BS30543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arx-RA | 504 | CG3893-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arx-RA | 892 | CG3893-RA | 79..586 | 13..520 | 2525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18900901..18901251 | 520..170 | 1755 | 100 | Minus |
| 3L | 28110227 | 3L | 18901320..18901476 | 169..13 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:40:52 has no hits.
BS30543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:27 Download gff for
BS30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3893-RA | 22..525 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:50 Download gff for
BS30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3893-RA | 83..586 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:09 Download gff for
BS30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arx-RA | 83..586 | 17..520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:09 Download gff for
BS30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18900901..18901251 | 170..520 | 100 | <- | Minus |
| 3L | 18901320..18901472 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:50 Download gff for
BS30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18894001..18894351 | 170..520 | 100 | <- | Minus |
| arm_3L | 18894420..18894572 | 17..169 | 100 | | Minus |
BS30543.pep Sequence
Translation from 16 to 519
> BS30543.pep
MVYCPYNKEHKMLRKKLQQHILKCRVIYKDTVELMVCPFNSSHLIPEPQF
FQHTQSCEDRNIIVHYQTSAPAVLSEDTRHAKIESEENWDDDESVPDYDP
QVYCSRANIVREPNGLFPAQRRAFIEQEKRRHFGEDYEEEKKPRKAKARA
DLRPTPYEHRRPYSRRQ*
BS30543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arx-PA | 167 | CG3893-PA | 1..167 | 1..167 | 910 | 100 | Plus |
| CG32625-PA | 144 | CG32625-PA | 11..136 | 2..131 | 171 | 28.8 | Plus |
| CG34283-PA | 153 | CG34283-PA | 19..147 | 4..131 | 170 | 26.2 | Plus |
