BS30547.complete Sequence
4427 bp assembled on 2012-07-30
GenBank Submission: KX804981
> BS30547.complete
GAAGTTATCAGTCGACATGAAGGTCACCGTCTGCTTCGGCGACGTTCGCA
TTCTGGTTCCCTGTGGTTCCGGCGAACTCCTCGTCCGCGATCTCGTCAAG
GAGGCCACGCGACGCTACATCAAGGCGGCCGGCAAGCCCGATTCCTGGGT
GACCGTGACGCATCTCCAGACACAGTCGGGCATCCTCGATCCGGATGATT
GTGTCCGCGACGTGGCCGACGATCGGGAGCAGATATTGGCGCACTTTGAT
GACCCAGGACCCGATCCAGGAGTTCCGCAAGGAGGCGGAGATGGAGCATC
GGGCAGTTCGTCCGTTGGCACCGGTTCGCCGGACATCTTTCGCGATCCCA
CCAACACGGAGGCGCCCACCTGTCCGCGGGATCTCTCCACGCCACACATC
GAGGTCACCAGCACCACATCGGGACCGATGGCTGGACTCGGAGTTGGACT
GATGGTGCGTCGCAGCAGTGATCCCAATCTGCTGGCCTCGCTGAAGGCAG
AGGGCAGTAACAAACGCTGGTCGGCGGCGGCTCCCCACTACGCTGGCGGG
GATTCGCCGGAGCGCCTGTTTCTTGACAAGGCCGGTGGCCAGTTATCGCC
ACAGTGGGAGGAGGACGACGATCCCAGTCATCAGCTAAAGGAACAGCTGC
TACATCAACAGCAGCCCCATGCTGCTAATGGAGGCTCCTCCTCCGGTAAC
CATCAGCCGTTTGCCCGATCCGGTCGCCTGTCGATGCAATTTCTTGGCGA
TGGCAATGGCTACAAGTGGATGGAGGCAGCCGAGAAACTTCAGAATCAGC
CGCCAGCCCAGCAGACATATCAGCAGGGTTCTCATCATGCTGGTCATGGT
CAAAACGGTGCCTACTCCAGCAAGTCCTTGCCCAGGGAGAGCAAGCGAAA
GGAGCCCTTGGGACAGGCATATGAATCCATCAGGGAGAAGGATGGTGAAA
TGCTGCTGATCATCAACGAGTACGGCAGTCCGCTGGGACTAACTGCTCTG
CCGGACAAGGAGCATGGCGGTGGACTGTTGGTGCAACATGTGGAGCCGGG
CAGCCGAGCCGAGAGAGGACGACTGCGTCGTGATGATCGCATCTTGGAGA
TCAATGGAATCAAGCTAATAGGACTCACCGAATCGCAGGTTCAGGAGCAA
CTGCGGCGGGCTTTGGAGAGCTCAGAGTTGAGAGTTCGAGTGCTGCGCGG
TGATCGCAATCGCCGCCAACAGCGTGACTCTAAGGTGGCCGAGATGGTGG
AGGTGGCTACGGTGTCACCCACCCGCAAACCACATGCTGCTCCGGTGGGC
ACCTCGCTGCAGGTGGCCAATACCCGTAAACTGGGCAGGAAAATCGAAAT
TATGCTCAAGAAGGGACCCAACGGTCTGGGCTTTTCGGTCACAACACGCG
ATAATCCCGCCGGTGGCCACTGTCCCATCTACATCAAGAATATCCTGCCA
CGAGGTGCGGCCATCGAGGATGGACGCCTGAAGCCCGGCGATCGTTTGCT
CGAGGTGGATGGCACTCCAATGACTGGTAAAACACAAACGGATGTGGTGG
CAATCTTGAGGGGCATGCCAGCGGGAGCAACCGTAAGGATTGTGGTCTCC
CGCCAGCAGGAGTTGGCGGAGCAGGCTGACCAGCCGGCGGAGAAAAGTGC
TGGTGTGGCGGTGGCGCCCTCAGTTGCTCCACCAGCTGTTCCTGCAGCTG
CAGCTCCAGCGCCTCCCATTCCGGTACAAAAATCCAGCAGCGCACGTTCT
CTGTTCACTCATCAGCAGCAATCGCAGCTCAACGAATCTCAGCACTTTAT
TGATGCGGGCAGCGAGTCGGCGGCTTCAAATGACAGCCTGCCGCCCAGCA
GCAACAGTTGGCACTCCCGCGAGGAGCTGACCCTGCACATTCCCGTACAC
GACACCGAAAAGGCCGGACTGGGTGTCAGTGTGAAGGGAAAGACGTGCTC
GAATCTGAACGCTTCCGGATCGAGTGCCTCCAGCGGCAGCAATGGACTGA
TGAAGCATGACGGTGACTTGGGTATATTCGTGAAGAATGTAATTCATGGC
GGTGCTGCATCCCGCGATGGTCGCTTGCGGATGAATGATCAACTGCTGAG
CGTGAATGGAGTATCGCTGCGTGGGCAAAACAATGCCGAGGCCATGGAGA
CACTACGTCGGGCAATGGTCAACACGCCCGGCAAACATCCGGGAACCATA
ACCCTGCTGGTAGGCCGCAAGATCTTGCGATCGGCCAGTTCCAGTGACAT
TCTGGACCACAGTAACAGTCACAGTCATAGCCATAGCAATAGTAGCGGTG
GCAGCAATTCAAATGGTAGCGGCAATAACAACAATAGCAGCTCGAATGCC
AGCGATAATTCTGGAGCCACGGTCATATATTTGAGTCCGGAGAAGAGGGA
GCAGCGCTGCAATGGCGGCGGAGGTGGTGGCAGTGCTGGCAATGAGATGA
ATAGATGGAGCAATCCCGTTTTGGATCGCCTAACCGGTGGCATTTGCTCC
TCGAATTCAGCGCAGCCATCCTCTCAGCAGTCTCACCAGCAGCAGCCGCA
TCCTTCGCAGCAGCAACAGCAGCAACGTCGCCTGCCTGCAGCGCCCGTTT
GCAGCAGTGCAGCTCTGAGAAACGAGAGCTACTACATGGCCACCAATGAC
AACTGGTCGCCGGCGCAGATGCACTTAATGACTGCTCATGGCAACACGGC
GCTGCTTATCGAGGACGATGCCGAGCCGATGTCTCCAACACTACCGGCAC
GTCCGCATGATGGGCAGCACTGCAACACGAGCAGTGCTAATCCATCGCAG
AACTTGGCCGTCGGCAATCAGGGGCCACCCATAAATACCGTGCCTGGTAC
TCCGTCGACATCCAGCAACTTTGATGCCACCTACTCCTCGCAACTGAGCT
TGGAGACAAACTCGGGCGTGGAGCATTTCTCGCGCGATGCTTTGGGACGA
CGCAGCATCTCTGAGAAGCACCATGCGGCGCTGGATGCCCGCGAAACTGG
CACCTATCAGCGGAATAAGAAGTTACGCGAGGAGCGCGAACGCGAGCGTC
GCATTCAGCTGACCAAATCGGCTGTGTATGGTGGTTCCATTGAGTCCCTT
ACGGCTCGCATAGCCAGTGCTAATGCCCAGTTTTCGGGATATAAACATGC
CAAGACTGCATCCAGTATCGAGCAAAGAGAGACGCAGCAGCAATTGGCCG
CTGCGGAGGCGGAGGCAAGGGATCAGCTGGGCGATCTGGGTCCATCGCTG
GGCATGAAGAAGTCCTCGTCGTTGGAGTCGCTCCAGACTATGGTGCAGGA
GCTGCAGATGTCGGATGAGCCGCGTGGTCATCAGGCGTTGCGCGCACCGC
GTGGGCGTGGCAGGGAGGACAGTCTGCGGGCGGCGGTGGTCAGCGAACCG
GATGCGAGCAAGCCCCGCAAGACCTGGCTTTTGGAGGATGGCGATCACGA
GGGTGGTTTTGCCTCGCAGCGCAATGGACCGTTCCAGAGTTCCCTGAACG
ATGGCAAACACGGCTGCAAGTCGTCGCGGGCCAAGAAGCCAAGCATACTG
CGCGGTATCGGTCACATGTTCCGCTTTGGCAAGAATCGCAAGGATGGCGT
GGTGCCAGTGGATAACTATGCGGTAAACATTTCGCCCCCTACATCGGTGG
TTTCCACAGCCACATCGCCGCAGCTGCAGCAGCAGCAACAGCAGCAGTTG
CAGCAACATCAGCAGCAACAACAGATACCAACCGCTGCATTGGCTGCTCT
GGAGAGAAATGGCAAACCGCCGGCGTATCAGCCACCGCCACCGCTGCCTG
CTCCAAATGGAGTGGGTAGCAATGGTATCCATCAGAACGACATCTTCAAC
CATCGCTATCAGCATTATGCCAACTACGAGGACCTCCACCAGCAGCACCA
GCAACACCAGATTAGTCGCCGCCATCAGCATTACCATTCGCAGCGCAGTG
CCCGCTCGCAGGATGTGAGCATGCACTCGACGAGCTCCGGATCCCAGCCA
GGATCCCTGGCTCAGCCGCAAGCGCAATCAAACGGCGTTCGTCCCATGAG
CAGTTACTACGAGTACGAGACGGTTCAACAGCAACGGGTGGGCAGCATCA
AGCATAGCCACAGCAGCAGCGCCACGTCGTCCTCCTCGTCGCCCATCAAT
GTGCCGCATTGGAAGGCGGCAGCCATGAATGGCTACTCGCCAGCCAGCCT
GAATAGCAGTGCCCGGAGTCGAGGTCCGTTTGTGACGCAGGTGACCATAC
GGGAGCAGAGCAGTGGCGGCATACCCGCCCACCTGCTGCAGCAACATCAG
CAGCAGCAACTCCAGCAGCAGCAGCCCACCTACCAGACTGTTCAGAAGAT
GTCAGGACCATCGCAATATGGTAGTGCCGCCGGTTCCCAGCCACACGCCT
CCAAGGTGTGAAAGCTTTCTAGACCAT
BS30547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baz-RA | 4395 | CG5055-PA | 1..4395 | 17..4411 | 21975 | 100 | Plus |
| baz-RD | 4458 | CG5055-PD | 181..4458 | 134..4411 | 21390 | 100 | Plus |
| baz-RC | 4500 | CG5055-PC | 1..3900 | 17..3916 | 19500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baz-RA | 11772 | CG5055-RA | 1063..5461 | 13..4411 | 21980 | 100 | Plus |
| baz-RD | 15726 | CG5055-RD | 5138..9415 | 134..4411 | 21390 | 100 | Plus |
| baz-RC | 11877 | CG5055-RC | 1063..4966 | 13..3916 | 19505 | 100 | Plus |
| baz-RD | 15726 | CG5055-RD | 1063..1186 | 13..136 | 605 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17188990..17190687 | 135..1832 | 8490 | 100 | Plus |
| X | 23542271 | X | 17191788..17192461 | 2737..3410 | 3370 | 100 | Plus |
| X | 23542271 | X | 17190755..17191381 | 1832..2458 | 3120 | 99.8 | Plus |
| X | 23542271 | X | 17192531..17193035 | 3411..3915 | 2525 | 100 | Plus |
| X | 23542271 | X | 17193897..17194394 | 3914..4411 | 2490 | 100 | Plus |
| X | 23542271 | X | 17191437..17191720 | 2453..2736 | 1420 | 100 | Plus |
| X | 23542271 | X | 17161068..17161191 | 13..136 | 605 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-28 11:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6899 | 3830..3944 | 142 | 60.3 | Plus |
BS30547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:15 Download gff for
BS30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| baz-RA | 1044..5437 | 17..4410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:36 Download gff for
BS30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| baz-RA | 1067..5460 | 17..4410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:04 Download gff for
BS30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| baz-RA | 1067..5460 | 17..4410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:04 Download gff for
BS30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17161072..17161191 | 17..136 | 100 | -> | Plus |
| X | 17188992..17190686 | 137..1831 | 100 | -> | Plus |
| X | 17190755..17191377 | 1832..2454 | 100 | -> | Plus |
| X | 17191439..17191720 | 2455..2736 | 100 | -> | Plus |
| X | 17191788..17192461 | 2737..3410 | 100 | -> | Plus |
| X | 17192531..17193035 | 3411..3915 | 100 | -> | Plus |
| X | 17193899..17194393 | 3916..4410 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:36 Download gff for
BS30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17085472..17085753 | 2455..2736 | 100 | -> | Plus |
| arm_X | 17055105..17055224 | 17..136 | 100 | -> | Plus |
| arm_X | 17083025..17084719 | 137..1831 | 100 | -> | Plus |
| arm_X | 17084788..17085410 | 1832..2454 | 100 | -> | Plus |
| arm_X | 17085821..17086494 | 2737..3410 | 100 | -> | Plus |
| arm_X | 17086564..17087068 | 3411..3915 | 100 | -> | Plus |
| arm_X | 17087932..17088426 | 3916..4410 | 100 | | Plus |
BS30547.pep Sequence
Translation from 16 to 4410
> BS30547.pep
MKVTVCFGDVRILVPCGSGELLVRDLVKEATRRYIKAAGKPDSWVTVTHL
QTQSGILDPDDCVRDVADDREQILAHFDDPGPDPGVPQGGGDGASGSSSV
GTGSPDIFRDPTNTEAPTCPRDLSTPHIEVTSTTSGPMAGLGVGLMVRRS
SDPNLLASLKAEGSNKRWSAAAPHYAGGDSPERLFLDKAGGQLSPQWEED
DDPSHQLKEQLLHQQQPHAANGGSSSGNHQPFARSGRLSMQFLGDGNGYK
WMEAAEKLQNQPPAQQTYQQGSHHAGHGQNGAYSSKSLPRESKRKEPLGQ
AYESIREKDGEMLLIINEYGSPLGLTALPDKEHGGGLLVQHVEPGSRAER
GRLRRDDRILEINGIKLIGLTESQVQEQLRRALESSELRVRVLRGDRNRR
QQRDSKVAEMVEVATVSPTRKPHAAPVGTSLQVANTRKLGRKIEIMLKKG
PNGLGFSVTTRDNPAGGHCPIYIKNILPRGAAIEDGRLKPGDRLLEVDGT
PMTGKTQTDVVAILRGMPAGATVRIVVSRQQELAEQADQPAEKSAGVAVA
PSVAPPAVPAAAAPAPPIPVQKSSSARSLFTHQQQSQLNESQHFIDAGSE
SAASNDSLPPSSNSWHSREELTLHIPVHDTEKAGLGVSVKGKTCSNLNAS
GSSASSGSNGLMKHDGDLGIFVKNVIHGGAASRDGRLRMNDQLLSVNGVS
LRGQNNAEAMETLRRAMVNTPGKHPGTITLLVGRKILRSASSSDILDHSN
SHSHSHSNSSGGSNSNGSGNNNNSSSNASDNSGATVIYLSPEKREQRCNG
GGGGGSAGNEMNRWSNPVLDRLTGGICSSNSAQPSSQQSHQQQPHPSQQQ
QQQRRLPAAPVCSSAALRNESYYMATNDNWSPAQMHLMTAHGNTALLIED
DAEPMSPTLPARPHDGQHCNTSSANPSQNLAVGNQGPPINTVPGTPSTSS
NFDATYSSQLSLETNSGVEHFSRDALGRRSISEKHHAALDARETGTYQRN
KKLREERERERRIQLTKSAVYGGSIESLTARIASANAQFSGYKHAKTASS
IEQRETQQQLAAAEAEARDQLGDLGPSLGMKKSSSLESLQTMVQELQMSD
EPRGHQALRAPRGRGREDSLRAAVVSEPDASKPRKTWLLEDGDHEGGFAS
QRNGPFQSSLNDGKHGCKSSRAKKPSILRGIGHMFRFGKNRKDGVVPVDN
YAVNISPPTSVVSTATSPQLQQQQQQQLQQHQQQQQIPTAALAALERNGK
PPAYQPPPPLPAPNGVGSNGIHQNDIFNHRYQHYANYEDLHQQHQQHQIS
RRHQHYHSQRSARSQDVSMHSTSSGSQPGSLAQPQAQSNGVRPMSSYYEY
ETVQQQRVGSIKHSHSSSATSSSSSPINVPHWKAAAMNGYSPASLNSSAR
SRGPFVTQVTIREQSSGGIPAHLLQQHQQQQLQQQQPTYQTVQKMSGPSQ
YGSAAGSQPHASKV*
BS30547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baz-PA | 1464 | CG5055-PA | 1..1464 | 1..1464 | 7601 | 100 | Plus |
| baz-PC | 1499 | CG5055-PC | 1..1499 | 1..1464 | 7555 | 97.7 | Plus |
| baz-PD | 1485 | CG5055-PD | 61..1485 | 40..1464 | 7403 | 100 | Plus |
| baz-PB | 1520 | CG5055-PB | 61..1520 | 40..1464 | 7357 | 97.6 | Plus |
| Patj-PB | 871 | CG12021-PB | 150..391 | 445..716 | 214 | 28.6 | Plus |
