BS30549.complete Sequence
3335 bp assembled on 2012-09-11
GenBank Submission: KX806377
> BS30549.complete
GAAGTTATCAGTCGACATGGCCACCAAACGCGTGCTGACGCCTAATATTT
TGGAGAATGATAACACTGACGTGACGTCATCCAATCCACAAAAGAAATTC
AAAGAGCAACTGGATTTTTCGTCAGACGAAGTGGAGAACATTGATTGGGG
TGACAATGATGACTTCGATTTGGCGCTGATTGCAGCTATGGATTCTATAT
CCAATCATCGATTGGAGCTCACCAAGTGGCAGCGTTGCGAAGTGGTGCGG
CTGGAGCAGCTCCCCAATAGAAAAGGCCTTAAAGTGCATGTTAAGAGGAT
TTCTGGCGGGGATCCGGAGACAGCTGATTGCCAACTGCTACCGCCGTGGA
ATTGCATGCCAATGCAAGTTGGAGACACTGTCTCCCTGTTGGGCAAGTGG
GATCCGTCTGCAGGATGCTATGTGGTCGATAAGGAGCAGGGCTACTGCGT
GTCCCATCCGGATTTCCTCATTTCCGGCACCACAGTCACCGGTTCCCTGT
TTTGCAAACGGAAATCTGTTCTGCAGGAACGATTTCGCGGTCTGGACTCG
GGAAACTCTGTTATGGTCATTGGCACTCTGGTGCACGAATTGCTGCAAAA
GGTTCTACGCCAGAAGCTCTTCGATAAAAAACACATTCAATCTGCCCTCC
AGGAGATGCTGGCCAGCTCTTCTTTGGCTCATTTACTCTATGCCAGCAAT
CTCATCCAGGTGGAAATGGAGGATCATCTGATGAAATTCATTGATCCCAT
TGTCAGTTTTGTGGCCCAATATGTGAAGGGTGAACCGCCAAGTGTTTTGC
TGCCCGAAGTCTATAGAGGTCAAATCCACGAGATATGCGATATAGAGGAG
AACCTCTGGGTTCCACAACTGGGACTCAAGGGTAAGGTGGATGTCTCCGT
AAAGGTAAAAAATCAACGGCAGAGGGAGGAGATCATACCACTGGAACTGA
AGACCGGCCGAGCCAGCTTCTCCATGGAACACAAGGGCCAATTGCTGCTC
TACCAACTGATGCACTCTGCCCAGGGCAGGGATACTCAATCGGGATTGCT
TCTGTACCTCAAAGAGGGACTCCTACGAGAAGTTGCTAGCGGGAGAAACG
AACAGAGGGATCTCCTTATGTTAAGAAATGATCTGGCCTACTGGCTAACA
CGTGAAGTAGCCATTCCGGCTAGCAAGGAGGATCCACTGGAGCAACTGCC
GCTACCCGAACCCGTTTACCATCACAGCGCCTGCGGCAATTGTGCCTACA
ATACCATTTGCTCCAGTTTCGCCCAGAAGGATTCAAGTTTACAGCTAAGC
GACTCACATCCCCTCAAGAAACTCATGCCACAGCTATTGGAGCATCTAAG
TGAGGCAGACCATGCCTACGTGCAGCATTGGTGTGGTTTGCTGGCTCTAG
AAGAGCAACACAATCGGCAGTCCTCGCATGTGAGGTCTTTTTGGACGAAG
GACCCTGCGGAGAGAGAAAAAGAAGGCATAGCCATTCGACATTTGAAGCT
AGTGAAGGGTCAAGAAGTGATATTAGAAGAGGGACGCTATCGCCAGACCT
TGGAGCTCGGTGAAGAGGCAGATCCCAGTCGAGATCTCAGCCTCAGTGGG
TTCGACTTGGGCGAATATGTTGTAATCAGTTCCACATCCCGTTTGGCCGT
TGCTGCTGGTTTTATTGTATCTATAGAAGCTCGTCGTTTGGATCTTCGGC
TGGAGAGGGATCTTAGCCAGCGTTATAGCGAGGAGACCTTTATTATTGAT
AAGCACGATTCGCAGTCCTTTGCCACTTTTAACTTTACCAATCTTGGTAT
GCTGCTCTCCGAGGGAGAACGCTTCCAGGAGCTGAGAGATATTATTGTGG
CCAAGAAGCCACCAGAGCAGCACAAAGTTCTGCCCAAGATCATCCTCACC
AAGGGAGCACCCATTCTGCTGAATCTTAACAAAGTGCAACAAAATGCTGC
TTTGCGTGCTTTGACAACCAGCAGTCACCTGTTGATCAAGGGACTGCCCG
GCACTGGTAAGACCCAGACATTGGTTGCCCTTGTCAGACTGCTCCATCTT
CTCGGAAAGAGTGTGCTTATTACAGCACAAACGCATTCGGCTGTGGACAA
TCTGATCATGCGTTTGCTGCCTTTCGGATTGCCCATGATGAGATTGGGCT
CTGGGTCTAGGATTCATAAGCAGTTGGAGGAAATCAGCGAAGAGAGGTTA
ACAAAAGACTGCAAAACAGTAGAGGAATTGGAGAAGGCTCTAGGGCAGCC
TTCCATTGTGGGAGTGACCTGTCTGGGATGTGGACATCCGCTCTTTCAGC
GTCGTCAGTTCGATTATTGCATCGTGGATGAGGCCACGCAGGTGTTGCAG
CCCACCGTGTTGCGTCCATTGATTCACTGCAGCAAATTTGTCCTTGTGGG
AGATCCAGAACAGTTGCCGCCGATTGTCAGATCCAAAGAAGCCCGACAAA
GGGGAGCGGATGAGACTTTATTCCAAAGATTGGACTCGGAAAAGGCCACC
GCCGTTTTGAGTTTACAGTACCGCATGAACAAAACCATCACCCGGCTGGC
CAATGAGCTCACCTATGGAGGAGACCTTAAGTGTGCATCGGATGAGGTGT
CCGGCGCGAGGTTTGAAGTCGAACTGTTGAACGAAGCACCCAGATGGGTG
CAGCGTGCCTTAACCACTCATTTAGAGCAGGCAGTCACGCTGATAAATAC
AGGGGATTGCTTAGAGCGTTGCCAGGAATTCGTTTATGCATCCCAGCGAC
TGGTGGATACCTGCTCATCCATAGAGCAAAGCTTTAGCGAGGACAAAGAT
GAGATTAGGAAGCTTACTTCCAAAAAGAGAGTATCCAAATACACAAACTA
CTGTGAAGCGGGCATAGTGATGCACTTGCTCAGATATTTATTAAAATCGG
GCTACGAAGCCTCCAGGATTGGCGTGATAGCACCATATCGCGCTCAAGTA
GAGCTATTCAAAAAGCTCGCCTCCAAACTGGACACCGACCTGGAGTGCAA
CACCGTGGATCAGTTCCAAGGCAGGGATAAAAATCTCATCATATACAGCT
GCTCCAAAACAGGTGGTGATTTCTCTGACATGGAACGCTCACGGGAGGCA
GAGATCCTGGAGGATCAGCGCCGTCTCACAGTGGCTATTACCCGTGCCAA
GAACAAGCTCATCCTACTGGGGGACATTAAGTGCCTGGAGCAATACGGTC
CCTTCCGTCAGCTTTTTAAGCACATTCCGGACAGGTGTCGGCTCAAGTTG
GAAGAAGGCCGCATGGAGTTCGGCTGGCAGCGCATCCAAGAGGATTTGGT
TGGTCTAATGGACACCTAGAAGCTTTCTAGACCAT
BS30549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2990-RB | 3303 | CG2990-PB | 1..3303 | 17..3319 | 16515 | 100 | Plus |
| CG2990-RC | 3300 | CG2990-PC | 1..3300 | 17..3319 | 16435 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2990-RB | 3683 | CG2990-RB | 91..3393 | 17..3319 | 16515 | 100 | Plus |
| CG2990-RC | 3680 | CG2990-RC | 91..3390 | 17..3319 | 16435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10012270..10013989 | 1600..3319 | 8600 | 100 | Plus |
| X | 23542271 | X | 10011174..10012211 | 563..1600 | 5190 | 100 | Plus |
| X | 23542271 | X | 10010571..10011116 | 17..562 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:01:13 has no hits.
BS30549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-11 10:33:45 Download gff for
BS30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RB | 69..3371 | 17..3319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:05 Download gff for
BS30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RB | 91..3393 | 17..3319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:26 Download gff for
BS30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RB | 91..3393 | 17..3319 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:26 Download gff for
BS30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10010571..10011116 | 17..562 | 100 | -> | Plus |
| X | 10011174..10012211 | 563..1600 | 100 | -> | Plus |
| X | 10012271..10013989 | 1601..3319 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:05 Download gff for
BS30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9904604..9905149 | 17..562 | 100 | -> | Plus |
| arm_X | 9905207..9906244 | 563..1600 | 100 | -> | Plus |
| arm_X | 9906304..9908022 | 1601..3319 | 100 | | Plus |
BS30549.pep Sequence
Translation from 16 to 3318
> BS30549.pep
MATKRVLTPNILENDNTDVTSSNPQKKFKEQLDFSSDEVENIDWGDNDDF
DLALIAAMDSISNHRLELTKWQRCEVVRLEQLPNRKGLKVHVKRISGGDP
ETADCQLLPPWNCMPMQVGDTVSLLGKWDPSAGCYVVDKEQGYCVSHPDF
LISGTTVTGSLFCKRKSVLQERFRGLDSGNSVMVIGTLVHELLQKVLRQK
LFDKKHIQSALQEMLASSSLAHLLYASNLIQVEMEDHLMKFIDPIVSFVA
QYVKGEPPSVLLPEVYRGQIHEICDIEENLWVPQLGLKGKVDVSVKVKNQ
RQREEIIPLELKTGRASFSMEHKGQLLLYQLMHSAQGRDTQSGLLLYLKE
GLLREVASGRNEQRDLLMLRNDLAYWLTREVAIPASKEDPLEQLPLPEPV
YHHSACGNCAYNTICSSFAQKDSSLQLSDSHPLKKLMPQLLEHLSEADHA
YVQHWCGLLALEEQHNRQSSHVRSFWTKDPAEREKEGIAIRHLKLVKGQE
VILEEGRYRQTLELGEEADPSRDLSLSGFDLGEYVVISSTSRLAVAAGFI
VSIEARRLDLRLERDLSQRYSEETFIIDKHDSQSFATFNFTNLGMLLSEG
ERFQELRDIIVAKKPPEQHKVLPKIILTKGAPILLNLNKVQQNAALRALT
TSSHLLIKGLPGTGKTQTLVALVRLLHLLGKSVLITAQTHSAVDNLIMRL
LPFGLPMMRLGSGSRIHKQLEEISEERLTKDCKTVEELEKALGQPSIVGV
TCLGCGHPLFQRRQFDYCIVDEATQVLQPTVLRPLIHCSKFVLVGDPEQL
PPIVRSKEARQRGADETLFQRLDSEKATAVLSLQYRMNKTITRLANELTY
GGDLKCASDEVSGARFEVELLNEAPRWVQRALTTHLEQAVTLINTGDCLE
RCQEFVYASQRLVDTCSSIEQSFSEDKDEIRKLTSKKRVSKYTNYCEAGI
VMHLLRYLLKSGYEASRIGVIAPYRAQVELFKKLASKLDTDLECNTVDQF
QGRDKNLIIYSCSKTGGDFSDMERSREAEILEDQRRLTVAITRAKNKLIL
LGDIKCLEQYGPFRQLFKHIPDRCRLKLEEGRMEFGWQRIQEDLVGLMDT
*
BS30549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2990-PB | 1100 | CG2990-PB | 1..1100 | 1..1100 | 5659 | 100 | Plus |
| CG2990-PC | 1099 | CG2990-PC | 1..1099 | 1..1100 | 5643 | 99.9 | Plus |
| Upf1-PB | 1180 | CG1559-PB | 446..875 | 631..1073 | 336 | 27.1 | Plus |
| Upf1-PA | 1180 | CG1559-PA | 446..875 | 631..1073 | 336 | 27.1 | Plus |
