BS30550.complete Sequence
6083 bp assembled on 2012-10-15
GenBank Submission: KX802885
> BS30550.complete
GAAGTTATCAGTCGACATGTCGGAAAGATCGAAAGGTGACGTGTCCGCTC
GCGTAAACAACAACGCAAACCAGACGCGTGTCGTTAAAAATCCGCTTCTG
AGCGCCTCCGTGACCGGCCTGAGTTTCGACGACTTCCCCAACAAGCCGCA
GCTCCTGCCAGCCGCCCCGCCCGTGGTCCATGCCACGCCTCCAGCGGCGC
CCGTCCTCATCGCTGGCATCTTGAATCGCGAACCGAAATCATTGGTCACC
GTTGGTCAGCCATCGAGCATTGACGATAGCGAGGCGCTCGACGAGATTAA
CTTGAATACCAGCAGCGAGGATTCCGTTGGCGCAGGTGGATCGAGTCCAT
ATCTAGGAGCAGGCGATCAAAACGCCAATCCTCTGTTGGAACCACCAACG
GAAGCTGGAAACGATTCGTTGCTGAGCCAGGCGGCCTCCTCCTTTACTGC
CCTGCCTGCGGTGGCATCCAATGTGTTTTCCACCTTCTCGAAGCGGATCT
ACGCCGGCAGCAGGGAGACCTCGGAGGAGCCCAAACTAGACATACAGCCC
TCTTACATTCAGCAGGCCAGCTACGTTCAGCCAGTAGCTCCAGTGCCAGC
TCCCTTTTATGCAGCACCGCCAGCGGCCGCAAACGAAGTGGTCGCCCCCG
AACCACCCAAGTTCTACGCACCTACTGAGGTTCCGCCACCGAATGTAGGA
GTCCCTGCACCACCGCCTACATCGGGAAATCCAAACACATACAGATTCAC
CGCCAGGAAGAAGCTATACGCTCCCATTCCTGGATTATCCGAGCAGTCCG
GACAACCTGCACAACAGCCACAGGTTCCTCAGGCTCCCCAAGCGGCTCCA
TCATTCCAGACGCCACCATATCCACCACAGCTAACGTACGCAGCAAACCC
TGCTCCCTTTGACATATCAGCGCAGCCAGCTGCAATTCCCGCAGAGGAAC
GCAAATCTGGTGGAGGACTCTTCTCTTTGACCAGTCTCGTGCCCACAGGA
GTGCTTCAAAATATCACAGGAATTGTTCAATCAGCCACTGGGCGAAGCAG
TGAACCAGAACACACTAACGTCCAGCAAGCAGGAGGCTACCTAGACATTA
CAACAGCATCAGCACCAGCTCCATCGACCAACTTATTTGGTGGACCGAAT
TCAACCTTTCCGCCGGGAGGAAATTATTTCGTACCGGGAGCACCTCCATC
ATTACCCTCAACAGGGGTAGTAGGCCCCCCTTCGGTCGGAAACTTCTTCG
CGCCGGCTGCTCCATTGCCAGTAGCACAAACAGCTGCTCCACCAGCTGTC
GGAGCCTTCTTCACATCTGCTGCCCCAAGTGTTACGCCTTCAGTTTTTAC
TCCAGGAACAGTTCCACCTCTTGCACCGCAGCCTTTTCAGTCAGCAACTG
TAAACCAATCTGCATTGCCACCAAACAATCCGCCGACCGCATCTGCAGTA
GGAGAACTCTTTGTTCCAGCACCAACGACAATCGCCCAAGGAACTTCACC
TGCAGTTCCATTTGTTGACACACAAGCTGTTCCAACAATACCTTTAACAG
TTCCACCAGGCAATCCTCCTCCAACATCGACACTTGGAGGATTCTTTACC
ACAGGTGAAGTTGCACCTGTTGTTGCGCCATTTGGAACACAAGCGTCACC
AGCAACACAATCTGCAGGATTCTTTAATCCAGGAGAAGTTCGTCCTAATG
TCCCGTTAGCCGAACCTGTTCCAACTATACCGATTACATCATCAGGTGTT
CCACCTATAGGATTATTTCCTCCAGCACCGGCACAGCCTGGTGTCCAAAC
TGCTTCAAATCCGAATCCCTTGCCAGGAGCAGCTGCACCGCCACCAGCCG
CTGGGCAAGCTTCATATCGTCTCCAGAAGGGAACTCGTCTTTACAAGAGT
CCATTGACGCCCCAGGAAACCGCAACATCTTCGGGATTCGCCGCTCCTCT
GCCCCCCACATCTGTAACTCCAGCAATTTTTAATCCATTCGGAGCACCGG
CACCAGGATCTTTCAATTCAGTAGGCCATCTAGAGGGTCAATCCAGCCAA
GGAGTTCCTTTCTTTACGCCGCCAGTGCAGAATCCACCAGGACAAGTAGC
GGCTCCAACTGTTGCTGTTCCGCAATCAGCACCTATTGCCCCTCCACCAG
GGACATCAAGCACAAGTGTTGCTCCTCCGCTAACAGCATCTATAGCCAAT
CCTCCTCCAACATCTGGCTTTGCAAGTGTACCCCTCTTCGCTGCACCAAC
AATATCCTCAACGCCTATTCCTTTCTTCAATCCTCAACCAACAGGAGCAG
AAGTAACAACTGGTTTGAGCCAACAGGAAAACGAAGCTACAGCATCGACA
ACTTTGGAAGGTCTAGTGCAAGGACCTGCTCCAACACTCTCTGCAAGTCA
ATTCTTTGATACGCCCTTGCCAACAGGAACCCAACCGGAGAATCAAGTAG
CAAGTGTTTCCTCGGAAAGAGAAAATCTTGTACAGGAGCCAATATCGAAC
CAAGGAATTCCATTCTTTGCGCCGCCGCAAACGAATATTTTTACACCACA
GCTTCAGCAAGAGTTCATAGCACCAGCAGAGGATTCCAAGCGATCCGAGA
TTCAAGAAGAATTCTTATCAGCACCACCACAAGAATCTAATCTATCAACC
GAACTTAGAGAAGATACACACACTGGTCCACCCGTAATCGAACCCGTTTT
GGAAGAAACCCCAGCAAGTAGCTCGGAATCGAGTGTTCCGCCCGCAAGTA
AGGTAGATCAAGAAGATATAGTCTACCCAGAACCATCTGCGCCGGTGGAA
CAAGAGATTCCATTATTCGTTCCAGTGCCAGGTTTGCCGGGACTAAGTCA
GGACATACCACTATATCCACCACCACCAACTGGTTCCACCACTGCCAGCT
CGATTTTTGCTGCGCCACCAGTGGCTTCAAGTGCTCCACTTTTTGTTCCT
GTTCCTGGTCCTCCGTCGGTTTCATCGTTATTTTCCCCCTCTCAAGTGGA
TTCTACTTCTTCGTTATTTGCTCCGCCACCAACATCTGCAAATACAACAA
TACTAACACCGGCTCCGGATACGACTTCTACGTTGTTTGCCAACAACATA
CCAACAACAACACCATCCATACCAGATATAGTTCCAACTACATCGGCTGA
GCTGGTTGACGCACCTCCTGGTTTCCAGGGATCATCAGACGACACCGCAA
CCAATCTATTTCAGGGAAACACCGAAACCCAAACAGTTTTTAGTCCATTT
GCACAAACTAAGGCTACACCTTTGGTTCAGGAAACAAAACCCGAATTGGT
TCCACCTCCAATTGGATTCTTTGCGCCGAAAAGCGAGTCGGAAGTTCTTA
GCCAGCCACCACTTGCTCCCTCGCCACTGCAAAGCTTCTTCAGCACAGCA
CCAGAAACAGCAACAACCACCGACTTCAATTTCTTCGGAAGCCCAGCACC
CGGCAGCGTGTTTCCTGATTTGCCAGTGCAGCAGGGAATCGCACCGCCAC
CATTGGCACTTGAGTCACCGCCACAGAATAGTGTGTCCAATATAGCCACA
TCTGCTATAGGATTCGATTTGTTAAACCAGACTCAGCAAGCTTCAAGTTT
AGTCGAAAACTCAAATCAAAATTCAAGTGTCAACTCTTTCGACGGCTATT
TTGGTGGTCCTAGTGCATCTGCGGCACAAACATTCGCAAACGAGACAACT
AATGCACTTGTTGCTCCAGCTATAAACTGCGATCCCGTCAATTTCTTCGA
TCAGGTTCCTCAAACCCAGTCGCAAATCCAGCAAGCAAACGAGGATCAGC
GCATTCAGAACTTCTTCAACAATCCACCGTTGCAGGATCAACCCGCTGTA
CCAGGTGAACTCAAATACGACATTGTCCACAGCGGAGTGGCTGTTAAGCA
GCTGCAAGAGCGCTCACAGACGCCCGTTTCAAATCTTGTCGAGCCACCTT
CGTCTGCCTGTTCGGAATTCTCGACCCTTGCTCCAGCACCAACACAAACC
GATCGCCAATCGGGCGACGATCTACTCCAACAGCATCTGGGCGAATTGCC
CGAGGATATCCTCAGAGAGCTTAGAATGGCAAGTGCCAGCAGCGAAAAGG
GCCAGGTGGCGACGCCTCCCGTGGCTATACCTTACTCACCAGTGGTGGCC
CATTGGTTCTACAAGCGCAGCGTGGACACAAAGTTCATCTGGACACCATT
CAGCCACTATGATTCGGCCTTGTTAGAAACCAGCCTAAATCTTGACGATT
CCACATTGATTATTCCCGTTGAGGGTGGCCGCTACGATGTAAACATCAAG
GAACGTACCAAGACTCCCGTTTACTGGGAGGGAAAGGCCATCGAAGTGCG
ACGCTGCTCCTGGTTCTACAAGGGAGTTGACTCCAAGTATGTTCCATACA
CCGAGGATACGGCTGCACTACTTGAAGCGGAATACAAGCGATCTGCGGAG
ACTGGTGAATGGCATCAGAAGATTATGCTGGCCAATGGCGAACAGGTGGT
CTTCCACGGACCTACAGTCATCGTTCACTTCCTGCCGCAACAGAATGCAG
ACACTTGGGGAGCCAGCACACAGGGTTCCATGCGTCCGAGAGTTGTCAAG
AGGGATCTGGATGATTTCACCATCGAGCAAGGCGAATCGCAGCGAGTCGA
TCACCTGCTTTTCATGGTCCATGGCATTGGCTCAGCCTGCGATTTGAAAA
TGCGTTCCGTGGAGGAAGTGGTGGATGACTTCCGGGTTATTGCCCAGCAA
CTAGTTCAGTCGCACTACAAAAACTCAACAGATATGGGCCTGGTGGGTCG
CGTTGAAGTTTTGCCCATCTCGTGGCACGGACACCTGCACTCCGAGGAGT
TAGGCATCGACGAAAAGCTGAAATCCATCACTTTGGAGTCTATTCCTCGC
TTGCGAAACTTCACCAATGACACGCTGCTCGACGTGCTGTTCTACACCAG
TCCGAAATACTGTCAAAAGATCATGAACACGGTGGCAGATGCGCTTAACG
ATGTCTACCTGAAGTACCGAATGCGGCACCCTGAATTCAATGGGGGAGTT
TCGCTGGCAGGTCACAGTCTCGGCTCCCTAATCCTATTCGATTTATTGTG
CCATCAGGAACCGCTCAAGGAAAGCGAGGAAGAGAATAAAGAGAATCCCG
ACCAACTTCCCCAAAAGCAATCGAGTCAAAAGGTACAGCTTCCAACCAGC
GATCCTTTGCCGAAACAAGTCAGCTATGCGATGGGTCCGGAGGGCACGGG
ACAGCCCGTGATTACATATACACAGCTGATATTCCACCCCAAAAAATTCT
TTGCTCTGGGCTCACCCATCGGAATGTTTGTAACCATCAGGGGGATTGAT
AAGCTTGGTCTCGACTTTCACCTGCCCACGTGTCCGGGTTTCTACAACAT
ATTCCATCCCTTCGATCCGGTAGCCTATCGGATCGAGGCGCTTGTCAATC
CGGACATGAACGGCATTCGACCGGTGTTAATTCCCCATCACAAGGGACGA
AAACGAATGCACCTGGAGCTGAAGGAGACGATGACACGTGTGGGTGCGGA
CATCAAGCAGCGATTTATGGACACATTCAAGACCACGCTGGACAGCGTAA
ACTTTTTGACCACGGTAACGAAGGTTAAGAAGGAAGCGGAGGAGTCGCTG
GAGAAGGAGACAAGCCAGACTTCATCGCAAGCTTTTCAAAAGCAAACCGA
GGATCAGGACGAGAGTTCAGTTGCCAGTTCATCTTGCAAACTACGAAATC
GCACCGATTCCAATTCGACGACGGCTTCTGACCCTGAGTTTATAGAACTT
GATTTCCCACTGGGTAAGCTGAACGACTCAAAACGTGTGGACTACGTGCT
TCAGGAAGCTCCACTAGAATTCATCAACGAATATATTTTCGCCCTGAGCA
GCCATGTGTGCTACTGGGGCTCCGAAGATACGATCCTTTTCGTGATGAAG
GAGATTTATGCCAGCCTGGGAATCAGCACAGACAGCCAGGTGCCGCAGTC
CTCAATGACCATCGAGCGACCCGTTTCGCATGAGAGCAGTGTTAGCCACT
CGCTGTTGCCGATGTGAAAGCTTTCTAGACCAT
BS30550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8552-RA | 6051 | CG8552-PA | 1..6051 | 17..6067 | 30255 | 100 | Plus |
| CG8552-RD | 6048 | CG8552-PD | 1..6048 | 17..6067 | 30175 | 100 | Plus |
| CG8552-RE | 1992 | CG8552-PE | 1..1992 | 4076..6067 | 9960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8552-RA | 6570 | CG8552-RA | 144..6194 | 17..6067 | 30255 | 100 | Plus |
| CG8552-RD | 6565 | CG8552-RD | 207..6254 | 17..6067 | 30175 | 100 | Plus |
| CG8552-RE | 6346 | CG8552-RE | 133..5970 | 230..6067 | 29190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8136880..8140779 | 4129..230 | 19500 | 100 | Minus |
| 2L | 23513712 | 2L | 8134841..8135621 | 5917..5137 | 3890 | 99.9 | Minus |
| 2L | 23513712 | 2L | 8136155..8136632 | 4721..4244 | 2390 | 100 | Minus |
| 2L | 23513712 | 2L | 8135673..8136093 | 5141..4721 | 2105 | 100 | Minus |
| 2L | 23513712 | 2L | 8159219..8159432 | 230..17 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 8134623..8134774 | 6067..5916 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 8136705..8136819 | 4244..4130 | 575 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2431 | 3027..3142 | 129 | 59 | Plus |
BS30550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:06 Download gff for
BS30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8552-RA | 144..6193 | 17..6066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:48 Download gff for
BS30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8552-RA | 144..6193 | 17..6066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:01 Download gff for
BS30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8552-RA | 144..6193 | 17..6066 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:01 Download gff for
BS30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8134624..8134773 | 5917..6066 | 100 | <- | Minus |
| 2L | 8134842..8135617 | 5141..5916 | 100 | <- | Minus |
| 2L | 8135674..8136092 | 4722..5140 | 100 | <- | Minus |
| 2L | 8136155..8136631 | 4245..4721 | 100 | <- | Minus |
| 2L | 8136705..8136819 | 4130..4244 | 100 | <- | Minus |
| 2L | 8136880..8140778 | 231..4129 | 100 | <- | Minus |
| 2L | 8159219..8159432 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:48 Download gff for
BS30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8134624..8134773 | 5917..6066 | 100 | <- | Minus |
| arm_2L | 8134842..8135617 | 5141..5916 | 100 | <- | Minus |
| arm_2L | 8135674..8136092 | 4722..5140 | 100 | <- | Minus |
| arm_2L | 8136155..8136631 | 4245..4721 | 100 | <- | Minus |
| arm_2L | 8136705..8136819 | 4130..4244 | 100 | <- | Minus |
| arm_2L | 8136880..8140778 | 231..4129 | 100 | <- | Minus |
| arm_2L | 8159219..8159432 | 17..230 | 100 | | Minus |
BS30550.pep Sequence
Translation from 16 to 6066
> BS30550.pep
MSERSKGDVSARVNNNANQTRVVKNPLLSASVTGLSFDDFPNKPQLLPAA
PPVVHATPPAAPVLIAGILNREPKSLVTVGQPSSIDDSEALDEINLNTSS
EDSVGAGGSSPYLGAGDQNANPLLEPPTEAGNDSLLSQAASSFTALPAVA
SNVFSTFSKRIYAGSRETSEEPKLDIQPSYIQQASYVQPVAPVPAPFYAA
PPAAANEVVAPEPPKFYAPTEVPPPNVGVPAPPPTSGNPNTYRFTARKKL
YAPIPGLSEQSGQPAQQPQVPQAPQAAPSFQTPPYPPQLTYAANPAPFDI
SAQPAAIPAEERKSGGGLFSLTSLVPTGVLQNITGIVQSATGRSSEPEHT
NVQQAGGYLDITTASAPAPSTNLFGGPNSTFPPGGNYFVPGAPPSLPSTG
VVGPPSVGNFFAPAAPLPVAQTAAPPAVGAFFTSAAPSVTPSVFTPGTVP
PLAPQPFQSATVNQSALPPNNPPTASAVGELFVPAPTTIAQGTSPAVPFV
DTQAVPTIPLTVPPGNPPPTSTLGGFFTTGEVAPVVAPFGTQASPATQSA
GFFNPGEVRPNVPLAEPVPTIPITSSGVPPIGLFPPAPAQPGVQTASNPN
PLPGAAAPPPAAGQASYRLQKGTRLYKSPLTPQETATSSGFAAPLPPTSV
TPAIFNPFGAPAPGSFNSVGHLEGQSSQGVPFFTPPVQNPPGQVAAPTVA
VPQSAPIAPPPGTSSTSVAPPLTASIANPPPTSGFASVPLFAAPTISSTP
IPFFNPQPTGAEVTTGLSQQENEATASTTLEGLVQGPAPTLSASQFFDTP
LPTGTQPENQVASVSSERENLVQEPISNQGIPFFAPPQTNIFTPQLQQEF
IAPAEDSKRSEIQEEFLSAPPQESNLSTELREDTHTGPPVIEPVLEETPA
SSSESSVPPASKVDQEDIVYPEPSAPVEQEIPLFVPVPGLPGLSQDIPLY
PPPPTGSTTASSIFAAPPVASSAPLFVPVPGPPSVSSLFSPSQVDSTSSL
FAPPPTSANTTILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAP
PGFQGSSDDTATNLFQGNTETQTVFSPFAQTKATPLVQETKPELVPPPIG
FFAPKSESEVLSQPPLAPSPLQSFFSTAPETATTTDFNFFGSPAPGSVFP
DLPVQQGIAPPPLALESPPQNSVSNIATSAIGFDLLNQTQQASSLVENSN
QNSSVNSFDGYFGGPSASAAQTFANETTNALVAPAINCDPVNFFDQVPQT
QSQIQQANEDQRIQNFFNNPPLQDQPAVPGELKYDIVHSGVAVKQLQERS
QTPVSNLVEPPSSACSEFSTLAPAPTQTDRQSGDDLLQQHLGELPEDILR
ELRMASASSEKGQVATPPVAIPYSPVVAHWFYKRSVDTKFIWTPFSHYDS
ALLETSLNLDDSTLIIPVEGGRYDVNIKERTKTPVYWEGKAIEVRRCSWF
YKGVDSKYVPYTEDTAALLEAEYKRSAETGEWHQKIMLANGEQVVFHGPT
VIVHFLPQQNADTWGASTQGSMRPRVVKRDLDDFTIEQGESQRVDHLLFM
VHGIGSACDLKMRSVEEVVDDFRVIAQQLVQSHYKNSTDMGLVGRVEVLP
ISWHGHLHSEELGIDEKLKSITLESIPRLRNFTNDTLLDVLFYTSPKYCQ
KIMNTVADALNDVYLKYRMRHPEFNGGVSLAGHSLGSLILFDLLCHQEPL
KESEEENKENPDQLPQKQSSQKVQLPTSDPLPKQVSYAMGPEGTGQPVIT
YTQLIFHPKKFFALGSPIGMFVTIRGIDKLGLDFHLPTCPGFYNIFHPFD
PVAYRIEALVNPDMNGIRPVLIPHHKGRKRMHLELKETMTRVGADIKQRF
MDTFKTTLDSVNFLTTVTKVKKEAEESLEKETSQTSSQAFQKQTEDQDES
SVASSSCKLRNRTDSNSTTASDPEFIELDFPLGKLNDSKRVDYVLQEAPL
EFINEYIFALSSHVCYWGSEDTILFVMKEIYASLGISTDSQVPQSSMTIE
RPVSHESSVSHSLLPM*
BS30550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8552-PA | 2016 | CG8552-PA | 1..2016 | 1..2016 | 10486 | 100 | Plus |
| CG8552-PD | 2015 | CG8552-PD | 1..2015 | 1..2016 | 10469 | 100 | Plus |
| CG8552-PE | 663 | CG8552-PE | 1..663 | 1354..2016 | 3471 | 100 | Plus |
| CG8552-PB | 663 | CG8552-PB | 1..663 | 1354..2016 | 3471 | 100 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 143..901 | 179..1036 | 326 | 24 | Plus |
