Clone BS30601 Report

Search the DGRC for BS30601

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:306
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptDph5-RA
Protein status:BS30601.pep: full length peptide match
Sequenced Size:878

Clone Sequence Records

BS30601.complete Sequence

878 bp assembled on 2013-01-07

GenBank Submission: KX800889

> BS30601.complete
GAAGTTATCAGTCGACATGTTCTACCTAATCGGCCTCGGCCTTGGCGACC
TGAAGGACATCACGGTCAAGGGTCTGGAGATAGTGAAGCAATGCAGTCGC
GTCTATCTGGAGATGTACACCTCGATTCTGGGCTGCAGCCTTGAGGATAT
GCAAGAGTTCTATGGACGACCACTGCTGCTAGCCGACCGCGATCTGGTGG
AGCAGGGTGCGGATGAGATCCTGGCGGGTGCGGGCGAATCCGATGTTGCG
CTGCTCGTGGTGGGCGACCCCTTTGGCGCCACCACCCACACAGACTTCAT
ACTGCGCGCCAAGGAGAAGAACATCCCCTACAAGGTCATCCACAATGCAT
CGATCATGAACGCCGTCGGCTGCTGCGGCCTGCAATTGTACAAATTCGGC
GAGACCGTTTCGATTCCGTACTGGGACGAGACATGGAAGCCGGACAGCTT
CTACGACAAGATCAAGCTGAATCGCCTGCACAACATGCACACGCTGTGCC
TGCTGGACATCAAGGTGAAGGAGCCCACGCCGGAGTCCTTGATGCGCAAA
CGCAAGGAGTACATGCCACCGCGTTTCATGACCGTGGCGGAGGCGGCTCA
TCAGTTGCTGTCCATTGTGGAGAAGAAGGACTCGCTGGAGAAGAACACAG
TGCTCAACGAGCAGTCACTGTGCGTTGGACTGGCCCGTGTTGGCCAGGAG
TCGCAGCAGATTGCCGTTGGCACGCTGCTTGAGATGCGCTCGACCGATTT
GGGCGGACCGCTGCACTCGCTCATCATTCCCGCCAAGGAGATGCATCCGC
TGGAGGTGGAGTTCTTGCAGCAGTATGCCCCCAGCATCAAGCTGGACGAC
TACAACCACTAAAAGCTTTCTAGACCAT

BS30601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dph5-RA 846 CG31289-PA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dph5-RA 1128 CG31289-RA 105..951 16..862 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22582205..22582916 862..151 3560 100 Minus
3R 32079331 3R 22582986..22583121 151..16 680 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:03:36 has no hits.

BS30601.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-07 15:31:35 Download gff for BS30601.complete
Subject Subject Range Query Range Percent Splice Strand
Dph5-RA 114..952 22..860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:28 Download gff for BS30601.complete
Subject Subject Range Query Range Percent Splice Strand
Dph5-RA 111..949 22..860 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:26 Download gff for BS30601.complete
Subject Subject Range Query Range Percent Splice Strand
Dph5-RA 111..949 22..860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:26 Download gff for BS30601.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22582207..22582915 152..860 100 <- Minus
3R 22582986..22583115 22..151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:28 Download gff for BS30601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18407929..18408637 152..860 100 <- Minus
arm_3R 18408708..18408837 22..151 100   Minus

BS30601.pep Sequence

Translation from 16 to 861

> BS30601.pep
MFYLIGLGLGDLKDITVKGLEIVKQCSRVYLEMYTSILGCSLEDMQEFYG
RPLLLADRDLVEQGADEILAGAGESDVALLVVGDPFGATTHTDFILRAKE
KNIPYKVIHNASIMNAVGCCGLQLYKFGETVSIPYWDETWKPDSFYDKIK
LNRLHNMHTLCLLDIKVKEPTPESLMRKRKEYMPPRFMTVAEAAHQLLSI
VEKKDSLEKNTVLNEQSLCVGLARVGQESQQIAVGTLLEMRSTDLGGPLH
SLIIPAKEMHPLEVEFLQQYAPSIKLDDYNH*

BS30601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dph5-PA 281 CG31289-PA 1..281 1..281 1461 100 Plus