BS30604.complete Sequence
776 bp assembled on 2012-07-09
GenBank Submission: KX802086
> BS30604.complete
GAAGTTATCAGTCGACATGCGTTTAACGCAATATTTGGCCAGCAAGTTGA
AGAACTTTTCCAATCTGCCCAAGGAATACATCGAGCGCAGCAAAAAACAG
GTGTACTGGCAAACTCCGAAGGAGATTAATTACCTACCGCGTACCGTGGA
GCGAAAGAGATTCCGCTACACCACAAATCGTTCATGGACGGGTCAGTTCC
GCCAGCAAAATATGCCCGGAACCGTGCGTCGCAAGGTGCTAGTGGAACCA
ATTGAGGACTGGAGCTTTTTCCGCGGCGATCGTATCGAAGTCCTTGTGGG
TAAAGACAAAGGAAAGCAGGGAATTGTCACCCAGGTTATACCCGAGCGCA
ATTGGGTAATTGTAGAGGGCCTGAACTGGCACTATCGCAAGGTTGGCGGT
GAGAAGGAGTTTCCCGGTATCATTATCAAGTCCGAGGCACCTTTGCACGT
CACCAAGGACATTCGTCTGGTTGACCCATCGGATCTTCAGGGCACCGACT
TTGAGTGGCGTTTCACGGAGGAGGGCGAGAAAGTGCGGGTGTCCTTGCGA
TCTGGCCGAATCATACCCATCCCGGAGACGAACAACCAGACGCACGATTA
TAAAACACCAAACGCCTATATCGAAAGGGAGAAGGATACGCCAGGCGCTG
TTGTGGGCGAGATCACCTTTCAGCCCAAGTTGTCCACATTCGAGATGGAC
ATTATGGAGGAAATGGGCATCAAAGAGGAACGCACGCCAGTCAAGAGCTA
TTGGTACTAAAAGCTTTCTAGACCAT
BS30604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL24-RA | 744 | CG8849-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL24-RA | 875 | CG8849-RA | 87..830 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4944474..4944865 | 645..254 | 1960 | 100 | Minus |
| 2L | 23513712 | 2L | 4944927..4945084 | 254..97 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 4944301..4944419 | 760..642 | 595 | 100 | Minus |
| 2L | 23513712 | 2L | 4945190..4945275 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:41:03 has no hits.
BS30604.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:28 Download gff for
BS30604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 69..810 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:53 Download gff for
BS30604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 87..828 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:12 Download gff for
BS30604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 87..828 | 17..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:12 Download gff for
BS30604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4945192..4945275 | 17..100 | 100 | | Minus |
| 2L | 4944303..4944416 | 645..758 | 100 | <- | Minus |
| 2L | 4944475..4944864 | 255..644 | 100 | <- | Minus |
| 2L | 4944927..4945080 | 101..254 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:53 Download gff for
BS30604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4944303..4944416 | 645..758 | 100 | <- | Minus |
| arm_2L | 4944475..4944864 | 255..644 | 100 | <- | Minus |
| arm_2L | 4944927..4945080 | 101..254 | 100 | <- | Minus |
| arm_2L | 4945192..4945275 | 17..100 | 100 | | Minus |
BS30604.pep Sequence
Translation from 16 to 759
> BS30604.pep
MRLTQYLASKLKNFSNLPKEYIERSKKQVYWQTPKEINYLPRTVERKRFR
YTTNRSWTGQFRQQNMPGTVRRKVLVEPIEDWSFFRGDRIEVLVGKDKGK
QGIVTQVIPERNWVIVEGLNWHYRKVGGEKEFPGIIIKSEAPLHVTKDIR
LVDPSDLQGTDFEWRFTEEGEKVRVSLRSGRIIPIPETNNQTHDYKTPNA
YIEREKDTPGAVVGEITFQPKLSTFEMDIMEEMGIKEERTPVKSYWY*
BS30604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL24-PA | 247 | CG8849-PA | 1..247 | 1..247 | 1317 | 100 | Plus |
