BS30609.complete Sequence
998 bp assembled on 2012-07-09
GenBank Submission: KX803729
> BS30609.complete
GAAGTTATCAGTCGACATGTCATTCTTACGCAGTGCTGTTGGTCTCCTGG
CTCGTGTCAAGCTCTTGGAGGGCTCACCGACTGTGCAAACGAGGCGCCAC
ATCAAGCGATGGGTTTCGCCAACGTTACGTGAGCTCGCCCACCGGCAGAA
GAAACTAGGACCACAAAAGCCAGAGCGGCGTTCTGGGTTCGTGGAGTGGA
ACCAGCGATCGGAGCTCTTCGCGTTCGGCAAGCGTTTGGGCGAATCCTTT
GAATTGTCGGAGCTGCAGCGTGCTTTTACAGAGAAATCGTTTGCAGAGCG
GGAGGAGGATCGTCGTCGGCAGCTAGGCATTGAGGAGTCTGACCTCCAGA
TGCCTCACAATAGCGATCTGGTCGAGAAGGGCCAACAAATTGCCCGTGCC
TACGTTGAGGCCTTCCTGCAGCACCAGTTACCGAAGGTCCCTAATGAAGG
ACTCCAGGCGATCGCCAGTTATCTACTTAGCACCGAAACGCTTGCTCACG
TCTCGACCCACCTGGGCACAAAGGATCTGATACAGTCTACGGAATACCCG
CCCTCGGCCGAAAGTCAGGCCAAATCTTTACACGCAGTTATTGGCGCCCT
GGCCAGTTCCAGTGGAATCGAGAGGGCTTTCATTTTTGTACGCGATTTCA
TCTGCACGCAACTGAATCAAAAGGACCTGTTGGAGGTGTGGACTCCCCAG
GAACCAATCCAGCTGCTGGAGAAGATATGCCAGGAGCGAAAGCTGGGCGA
AGCGGAGCCCCGCCTGCTTGGAGACTGCGGAAAGAACACTGTGCTAGCCG
CCTACCAAGTAGGCATCTACGCCAACCGGCAGCTACTGGGCAAGGGATTC
GGTGAAGATGTGAAAACAGCCACAGAGACTGCGGCACTCGACGCTCTGCA
GAGCATCTTTGACACCCGCGACAACCGGAGACCCTTTGACTTTGCCATTC
AGCTAGAACCAAAGACCGTGCGACTTGGCTGAAAGCTTTCTAGACCAT
BS30609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL44-RA | 966 | CG2109-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL44-RA | 1122 | CG2109-RA | 59..1024 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5469561..5470460 | 982..83 | 4500 | 100 | Minus |
3R | 32079331 | 3R | 5470512..5470578 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:41:08 has no hits.
BS30609.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:29 Download gff for
BS30609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL44-RA | 83..1047 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:54 Download gff for
BS30609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL44-RA | 59..1023 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:15 Download gff for
BS30609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL44-RA | 59..1023 | 17..981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:15 Download gff for
BS30609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5469562..5470459 | 84..981 | 100 | <- | Minus |
3R | 5470512..5470578 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:54 Download gff for
BS30609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1295284..1296181 | 84..981 | 100 | <- | Minus |
arm_3R | 1296234..1296300 | 17..83 | 100 | | Minus |
BS30609.pep Sequence
Translation from 16 to 981
> BS30609.pep
MSFLRSAVGLLARVKLLEGSPTVQTRRHIKRWVSPTLRELAHRQKKLGPQ
KPERRSGFVEWNQRSELFAFGKRLGESFELSELQRAFTEKSFAEREEDRR
RQLGIEESDLQMPHNSDLVEKGQQIARAYVEAFLQHQLPKVPNEGLQAIA
SYLLSTETLAHVSTHLGTKDLIQSTEYPPSAESQAKSLHAVIGALASSSG
IERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKLGEAEPRL
LGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSIFDT
RDNRRPFDFAIQLEPKTVRLG*
BS30609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL44-PA | 321 | CG2109-PA | 1..321 | 1..321 | 1629 | 100 | Plus |