Clone BS30609 Report

Search the DGRC for BS30609

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:306
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL44-RA
Protein status:BS30609.pep: full length peptide match
Sequenced Size:998

Clone Sequence Records

BS30609.complete Sequence

998 bp assembled on 2012-07-09

GenBank Submission: KX803729

> BS30609.complete
GAAGTTATCAGTCGACATGTCATTCTTACGCAGTGCTGTTGGTCTCCTGG
CTCGTGTCAAGCTCTTGGAGGGCTCACCGACTGTGCAAACGAGGCGCCAC
ATCAAGCGATGGGTTTCGCCAACGTTACGTGAGCTCGCCCACCGGCAGAA
GAAACTAGGACCACAAAAGCCAGAGCGGCGTTCTGGGTTCGTGGAGTGGA
ACCAGCGATCGGAGCTCTTCGCGTTCGGCAAGCGTTTGGGCGAATCCTTT
GAATTGTCGGAGCTGCAGCGTGCTTTTACAGAGAAATCGTTTGCAGAGCG
GGAGGAGGATCGTCGTCGGCAGCTAGGCATTGAGGAGTCTGACCTCCAGA
TGCCTCACAATAGCGATCTGGTCGAGAAGGGCCAACAAATTGCCCGTGCC
TACGTTGAGGCCTTCCTGCAGCACCAGTTACCGAAGGTCCCTAATGAAGG
ACTCCAGGCGATCGCCAGTTATCTACTTAGCACCGAAACGCTTGCTCACG
TCTCGACCCACCTGGGCACAAAGGATCTGATACAGTCTACGGAATACCCG
CCCTCGGCCGAAAGTCAGGCCAAATCTTTACACGCAGTTATTGGCGCCCT
GGCCAGTTCCAGTGGAATCGAGAGGGCTTTCATTTTTGTACGCGATTTCA
TCTGCACGCAACTGAATCAAAAGGACCTGTTGGAGGTGTGGACTCCCCAG
GAACCAATCCAGCTGCTGGAGAAGATATGCCAGGAGCGAAAGCTGGGCGA
AGCGGAGCCCCGCCTGCTTGGAGACTGCGGAAAGAACACTGTGCTAGCCG
CCTACCAAGTAGGCATCTACGCCAACCGGCAGCTACTGGGCAAGGGATTC
GGTGAAGATGTGAAAACAGCCACAGAGACTGCGGCACTCGACGCTCTGCA
GAGCATCTTTGACACCCGCGACAACCGGAGACCCTTTGACTTTGCCATTC
AGCTAGAACCAAAGACCGTGCGACTTGGCTGAAAGCTTTCTAGACCAT

BS30609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL44-RA 966 CG2109-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL44-RA 1122 CG2109-RA 59..1024 17..982 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5469561..5470460 982..83 4500 100 Minus
3R 32079331 3R 5470512..5470578 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:41:08 has no hits.

BS30609.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:29 Download gff for BS30609.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 83..1047 17..981 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:54 Download gff for BS30609.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 59..1023 17..981 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:15 Download gff for BS30609.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 59..1023 17..981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:15 Download gff for BS30609.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5469562..5470459 84..981 100 <- Minus
3R 5470512..5470578 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:54 Download gff for BS30609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1295284..1296181 84..981 100 <- Minus
arm_3R 1296234..1296300 17..83 100   Minus

BS30609.pep Sequence

Translation from 16 to 981

> BS30609.pep
MSFLRSAVGLLARVKLLEGSPTVQTRRHIKRWVSPTLRELAHRQKKLGPQ
KPERRSGFVEWNQRSELFAFGKRLGESFELSELQRAFTEKSFAEREEDRR
RQLGIEESDLQMPHNSDLVEKGQQIARAYVEAFLQHQLPKVPNEGLQAIA
SYLLSTETLAHVSTHLGTKDLIQSTEYPPSAESQAKSLHAVIGALASSSG
IERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKLGEAEPRL
LGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSIFDT
RDNRRPFDFAIQLEPKTVRLG*

BS30609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL44-PA 321 CG2109-PA 1..321 1..321 1629 100 Plus