BS30621.complete Sequence
1937 bp assembled on 2012-09-28
GenBank Submission: KX806433
> BS30621.complete
GAAGTTATCAGTCGACATGTTAAAGCTAGGTCTGGTCATCTTCTGCGTGT
TGGTCGCTAGTGGGCCGACGTGGAGCGCCCGCACCGTGGACAGTCACCTG
GGGCAAAAGGATCTCAGCCGCCTGCAAAAAGTTTTCGTGGACGGATTTGG
TTCCAGTGACCTGCAGTCGATCTTCTTCTCCAGCCTAAACATTCAACTGA
CTGATGCCACTCAGAAGGAGCCGTTGTGCAAGAAGATTGCTACGCTGCAT
TCCGAATCCAAGCTGAACAGCTTCGAAAAAGACTACTACTACATTGGTGC
TAGCAGAAACCTGGGTTGCTCCGCTAAGATTGACGAGGGTCTGCTTTCCA
AGGTGTATAGTTCCCTGAACTCGGAGCTCGGCAGCTCTCAGGAGATCTTC
TACCGCGTGGTCACCCACAAAGTGCTCGGCGTGGAGATCAATGAAGCCAC
TCAGGAAAAACTAGTGAAGCGTTTGCAAGAACTGCTCAAGAAGGACGACA
CACTCAGCGGCCTGGGATACGCTTTCAATGTTGCTCCACTTCTGGGTGCC
AGTGCCTCCTTTATCGCAAATCGCGTGGAGGATGCCATCGTGCAAGCAGA
TGAAGTTGACGGCAAGCTCTTGCAATTCGAAGGCGGTCTCAGTATCACAT
CCCTGATCATCAATGGTGCTTTCGGTGTGAGCAAGACCTTTAACAAGCCC
GTGCCCATTACTGCTGACCAGGCAGTTAAGTTTGCTAACTACTTCCTTAG
CCGCCGATCCGTCCAAACCGCCAAAGGAGCTCATGTGCTAATCGAGGCGC
TGAAGACTATTAGTGGAGCCGATAAAATTGCTCCCGTTTGTGTGCAGCTC
ATTGGCAACGGTCAATTGGACGCTCAGTCGCCGACTCTGAACGTAGCCGT
TGTTGATCTGCTCGGCAAGCCTTTGTCACCTGCCCCCAAAGTCATCAATG
CAAAGGTTATTCGCAAGAAGGACAGCTCTGTTTTAGCTGATAAAATCACT
GTGGCCTCGAAATCCTCGGACAAAACCACCTATGTGGCTGATTTGGCCAG
CTTAAAGCCAGCTCGCGGCGTTTACCAGGCGGAGTTGAGTGCAGATGGTG
TCTACACCCAGACACTGCAGTTCAAGGTTCTTGGCCGCGTCAAGGTTCAA
TCTCTCGAGGTGGGCATTGCGGAATCTGATGCTAGCGCTGCTACCCGCAA
GCAGAGTGTGACCTATCCAGGAAAACTGCAGGAGGTTCTCTCCGCTGACA
GCACCCAGAAGCTTTTGCTGAAGGCCGTTCTGGTAGATGAATCCACCAGC
AAGCCTCTGGCTGTCCATCAGGCATTCGTTCGACTCTACAACAAGAAAAC
TGACAAGGAGATCATCTTTGTGGCCGAGCAGGATAGCAGCAAGGCGTACA
AATTCGACATGGATGTTGGCAACAACGGAAAGAACTTTAACTACCAGAGC
GGCACCTACAGCATTTACTTGACCGTGGGCGATTCCTCTTTGTCCAACTC
CTTCGAGTGGTTAGTTGCTGAAGTCCAATTGAAATTCAACGAGGATAAGG
AAGTCAAGCCTAAGAACACTTCTGGTCCCCTGCCCGAAATCATCCATCAG
TTCCGAGTGCCCGATAAGCGCCCGCCCCGCATTGTTTCTGATATCTTCAC
CGGACTGTGCATAACCCCGCTTGTGCTGCTTTTCGTTTTTTGGGGAAAAC
TGGGCATCAATGTATCTAACCTGACGCTGGCACCGAGTACGATCGGGTTT
CATCTGGGTTTCGGTGGCATTCTGGTGCTGTTCTTCGTGTTCTGGCTGCA
GCTTAACATGTTCCAGACACTGCGCCTGCTGATTCCCATCGCAGTATTCA
CATTCCTGGCTGGCAACCGATTACTGAGACGTCTTTACGCACAACGTAAC
TCGAAGGCAAGTGCGTCGTAAAAGCTTTCTAGACCAT
BS30621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OstDelta-RA | 1905 | CG6370-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| OstDelta-RB | 1902 | CG6370-PB | 1..1902 | 17..1921 | 9445 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OstDelta-RA | 2201 | CG6370-RA | 190..2094 | 17..1921 | 9525 | 100 | Plus |
| OstDelta-RB | 2198 | CG6370-RB | 190..2091 | 17..1921 | 9445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17765111..17766392 | 1550..269 | 6410 | 100 | Minus |
| 2R | 25286936 | 2R | 17764681..17765052 | 1921..1550 | 1860 | 100 | Minus |
| 2R | 25286936 | 2R | 17766461..17766701 | 268..28 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:18:58 has no hits.
BS30621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:17 Download gff for
BS30621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6370-RA | 332..2229 | 22..1919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:36 Download gff for
BS30621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OstDelta-RA | 195..2092 | 22..1919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:44 Download gff for
BS30621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OstDelta-RA | 195..2092 | 22..1919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:44 Download gff for
BS30621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17764683..17765051 | 1551..1919 | 100 | <- | Minus |
| 2R | 17765111..17766392 | 269..1550 | 100 | <- | Minus |
| 2R | 17766461..17766707 | 22..268 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:36 Download gff for
BS30621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13652188..13652556 | 1551..1919 | 100 | <- | Minus |
| arm_2R | 13652616..13653897 | 269..1550 | 100 | <- | Minus |
| arm_2R | 13653966..13654212 | 22..268 | 99 | | Minus |
BS30621.pep Sequence
Translation from 16 to 1920
> BS30621.pep
MLKLGLVIFCVLVASGPTWSARTVDSHLGQKDLSRLQKVFVDGFGSSDLQ
SIFFSSLNIQLTDATQKEPLCKKIATLHSESKLNSFEKDYYYIGASRNLG
CSAKIDEGLLSKVYSSLNSELGSSQEIFYRVVTHKVLGVEINEATQEKLV
KRLQELLKKDDTLSGLGYAFNVAPLLGASASFIANRVEDAIVQADEVDGK
LLQFEGGLSITSLIINGAFGVSKTFNKPVPITADQAVKFANYFLSRRSVQ
TAKGAHVLIEALKTISGADKIAPVCVQLIGNGQLDAQSPTLNVAVVDLLG
KPLSPAPKVINAKVIRKKDSSVLADKITVASKSSDKTTYVADLASLKPAR
GVYQAELSADGVYTQTLQFKVLGRVKVQSLEVGIAESDASAATRKQSVTY
PGKLQEVLSADSTQKLLLKAVLVDESTSKPLAVHQAFVRLYNKKTDKEII
FVAEQDSSKAYKFDMDVGNNGKNFNYQSGTYSIYLTVGDSSLSNSFEWLV
AEVQLKFNEDKEVKPKNTSGPLPEIIHQFRVPDKRPPRIVSDIFTGLCIT
PLVLLFVFWGKLGINVSNLTLAPSTIGFHLGFGGILVLFFVFWLQLNMFQ
TLRLLIPIAVFTFLAGNRLLRRLYAQRNSKASAS*
BS30621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OstDelta-PA | 634 | CG6370-PA | 1..634 | 1..634 | 3162 | 100 | Plus |
| OstDelta-PB | 633 | CG6370-PB | 1..633 | 1..634 | 3145 | 99.8 | Plus |
