BS30623.complete Sequence
1667 bp assembled on 2012-07-30
GenBank Submission: KX804424
> BS30623.complete
GAAGTTATCAGTCGACATGTTCGGTGGACAGCAGCCAATACTCGTGTTGA
GTCAAAACACAAAGAGAGAATCGGGCCGCAAAGTGCAGTTGGAGAACATC
CAAGCCGGAAAGGCCATCGCCGATGTGATACGCACATGTCTGGGGCCACA
GGCCATGCTGAAGATGCTGATGGACCCAATGGGCGGCATCGTGATGACCA
ACGATGGCAACGCCATCCTGCGTGAGATCACTGTGCAGCACCCGGCGGCC
AAGAGCATGATTGAAATTGCTCGCACACAAGACGAGGAGGTTGGCGATGG
TACCACATCGGTCATCGTCCTGGCCGGCGAGATGCTGGCCGCCGCCGAGC
CCTTCCTCCAGCAACAGATCCACCCCACTGTTATCATTCGCGCCTATCGC
GAGGCCCTCGAGGACATCGTCGGCCACCTGCAGTCCCAGCTTAGCATCCA
GTTGGACGTCAAGGATAAGGCCAAGATGGCCGATGTGGTCAAGGCCTGTG
TGGGCACCAAGTTCATTGGCAAGTGGTCCGACCTTGCCGTCAAGATTGCC
CTGGACGCAGTCGAGACAGTGACGCTAAGTGAGAACGGCCGTCTGGAGGT
AGACATTAAACGCTATGCCAAGGTGGAGAAGATCCCGGGTGGCGCCATCG
AGGAGTCGTGTGTTCTTAAGGGCGTGATGATCAACAAAGACGTGACGCAT
CCCAAGATGCGACGCCTCATCGAGAATCCCCGCATCGTGCTGCTTGACTG
CTCGCTGGAGTACAAGAAGGGCGAGAGCCAAACCAACGTGGAGATAATCG
GGGAGCAAGACTTCACCCGCATGCTGCAGATCGAGGAGGAGTTTGTGCAG
CGCATCTGCGCCGACATCATTGCCGTGAAACCGGATTTGGTATTCACTGA
GAAGGGTGTCTCCGATCTCGCCCAGCACTATTTGCTGAAGGCTGGCATCA
CGGCCATCCGTCGGCTGCGTAAGACTGACAATCTGCGCATCGCCCGCGCC
TGTGGTGCCACCATCGTGAACCGCACTGAGGAGCTAACCGAGAAGGATGT
GGGCACGGGAGCTGGACTGTTCGAAGTCAAAAAGATCGGCGATGAGTACT
TCACTTTCGTGACGGAGTGCAAGGAGCCCAAGGCCTGCACCATCCTGCTG
CGCGGTGCCAGCAAGGACATCTTGAACGAAACGGAGCGCAACCTGCAGGA
CGCCCTGCACGTGGCCCGCAACTTGGTGCTGGAGCCACGCCTGGTGGCTG
GCGGCGGAGCCGTTGAGATGGCTGCCTCCCAGCTGCTCACGCGCAAGCAG
GTTAAGGGACCATACACGGCGGTGGCCCACGCCCTAGAGATCATACCGCG
CACACTGGCTCAGAATTGCGGCGCCAACACGATCCGTGCTCTGACTGCTC
TCCGCGCCAAGCACGCCTCCCACACCGGCGATGGTGTCTGCGCCTGGGGC
ATCGACGGCGAGTCCGGCGAAATCGTGGACATGAACGTGAAGAACATCTG
GGAGCCGCTGGCCGTCAAGCTTCAGACCTACAAGACCGCCGTGGAGACGG
CCATCCTGCTGCTGCGCATCGATGATATCGTCTCTGGATCAAAGAAACGC
GGCGGCAACGAGCCCACCAATCCGGCGGCCATGGCCCAGGGTCAGGAGTA
GAAGCTTTCTAGACCAT
BS30623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cctgamma-RD | 1635 | CG8977-PD | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| Cctgamma-RC | 1635 | CG8977-PC | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| Cctgamma-RB | 1635 | CG8977-PB | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cctgamma-RD | 2071 | CG8977-RD | 198..1836 | 17..1655 | 8180 | 99.9 | Plus |
| Cctgamma-RC | 2086 | CG8977-RC | 213..1851 | 17..1655 | 8180 | 99.9 | Plus |
| Cctgamma-RB | 2165 | CG8977-RB | 292..1930 | 17..1655 | 8180 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16648700..16649743 | 612..1655 | 5205 | 99.9 | Plus |
| 3R | 32079331 | 3R | 16648133..16648634 | 111..612 | 2510 | 100 | Plus |
| 3R | 32079331 | 3R | 16647988..16648050 | 51..113 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:57:48 has no hits.
BS30623.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:18 Download gff for
BS30623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RC | 234..1863 | 22..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:59 Download gff for
BS30623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RB | 297..1926 | 22..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:24 Download gff for
BS30623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RB | 297..1926 | 22..1651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:24 Download gff for
BS30623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16647901..16647929 | 22..50 | 100 | -> | Plus |
| 3R | 16647988..16648049 | 51..112 | 100 | -> | Plus |
| 3R | 16648135..16648634 | 113..612 | 100 | -> | Plus |
| 3R | 16648701..16649739 | 613..1651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:59 Download gff for
BS30623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12473623..12473651 | 22..50 | 100 | -> | Plus |
| arm_3R | 12473710..12473771 | 51..112 | 100 | -> | Plus |
| arm_3R | 12473857..12474356 | 113..612 | 100 | -> | Plus |
| arm_3R | 12474423..12475461 | 613..1651 | 100 | | Plus |
BS30623.pep Sequence
Translation from 16 to 1650
> BS30623.pep
MFGGQQPILVLSQNTKRESGRKVQLENIQAGKAIADVIRTCLGPQAMLKM
LMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVI
VLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQLDVKD
KAKMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSENGRLEVDIKRY
AKVEKIPGGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYK
KGESQTNVEIIGEQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEKGVSD
LAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNRTEELTEKDVGTGAG
LFEVKKIGDEYFTFVTECKEPKACTILLRGASKDILNETERNLQDALHVA
RNLVLEPRLVAGGGAVEMAASQLLTRKQVKGPYTAVAHALEIIPRTLAQN
CGANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAV
KLQTYKTAVETAILLLRIDDIVSGSKKRGGNEPTNPAAMAQGQE*
BS30623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cctgamma-PD | 544 | CG8977-PD | 1..544 | 1..544 | 2738 | 100 | Plus |
| Cctgamma-PC | 544 | CG8977-PC | 1..544 | 1..544 | 2738 | 100 | Plus |
| Cctgamma-PB | 544 | CG8977-PB | 1..544 | 1..544 | 2738 | 100 | Plus |
| Cctgamma-PA | 544 | CG8977-PA | 1..544 | 1..544 | 2738 | 100 | Plus |
| Tcp-1eta-PA | 544 | CG8351-PA | 2..538 | 5..543 | 709 | 30.8 | Plus |
