BS30627.complete Sequence
2201 bp assembled on 2012-07-30
GenBank Submission: KX805114
> BS30627.complete
GAAGTTATCAGTCGACATGAGCAGCCAGGGACACCATAAGATGTCCGGCG
GCGGCAAGAAGGGCGCCATGGAGCAGGACTACACCGACGTGGTCGATCTG
GGCGATCGCTTCTCAGCGGACATGGCGCGCCTCTGCATGAACGAACAGTA
CGCGGACGTGGAGTTCATCGTCGAGGAGGAGCGCATACCCGCCCACCGCG
TCATACTCGCGGCACGCAGCGAATACTTCCGGGCGCTGCTGTACGGCGGC
ATGGCGGAGACCACACAGCGCCAAATACCGCTTGAGGTGCCGCTGGAAGC
GTTCAAGGTGCTGCTGCGCTACATTTACTCGGGCACACTGCTGCTGTCCA
CATTGGACGAGGATTCCACCATCGATGTGCTGGGCATGGCCAATCAGTAT
GGTTTCCAGGATCTGGAGATGGCCATATCGAATTATTTACGCCAGTATCT
GGCCTTGGACAATGTCTGCATGATTCTTGATGCGGCGCGTCTATACAATC
TAGAGGAACTCACCGAGGTTTGCCTAATGTTCATGGATCGCAATGCCGGC
GACCTGCTGCTGCACAACAGCTTCAATACGCTATCCAAGGAATCGCTGGA
GGAGGTACTACGGCGTGACTGCTTCTTCGCCCCCGAGGTGCAGATCTTTT
TGGCCGTGTGGAAGTGGAGCCGCTTCAATAGCAACGTGGACTTCAAGTCC
GTGGTTAGTTATGTCCGCCTGCCACTGATGAACCTCGAGCATCTGCTGCA
GGTGGTGCGTCCCTCGGGCATCCTGGATCCCGACAAGATTCTCGACGCCA
TCGACGAGCGCAGCACTTCAAAGGCGCTGCCCTACAGGGCGGCGCTCTGG
CCGGAGGAAAACGTGGCCGCGGAGACGTTTTTGTCGCGCTGCATCCAGGG
AGAGTGTCGCGACGCGCTGCTGGATGGAGATGTGACCACCTATGACATGG
AGAACGGGTATACGCGCCACTGCATTACGGACAGCAAAGATGCGGGCATT
GTGGTCGAATTGGGCACGTTCTGCATGATCAATCACATTCGCATGCTGCT
CTGGGACAGAGACAGCCGGGCGTACTCCTACTACGTTGAGGTGTCCGGCG
ACCAGCAGCATTGGGATCGCGTGGTCGACTACAGCGACTACCACTGCCGC
TCCTGGCAATACTTATACTTCGAAGCACGACCCGTCAGATTCATTCGACT
GGTGGGCACCCAGAACACTGTAAACCGGGTATTCCATGTTGTGGGTCTGG
AAGCCATGCACACGGCCAAGGTGCCGCGTTTAGTTAACCATTTTGTGGCG
CCCAAGACGAACGTGGCCACCGTAGAGATGAGCGCCATTGTGACGGACGG
CGTGAGTCGCACCCGCAACGCGCTTATCAACGGCGATTATGTGCGCTACG
ACTGGGACTCGGGATATACTTGCCACCAATTGGGCAGCGGCGAGATCGTC
GTCCGTTTGGGCCAACCCTACTATTTGGGCTCAATGAGGCTGTTGCTGTG
GGACTGCGATGATCGCACCTACAGCTTCTACATCGAAATTTCGACGAACC
GCAAGGAATGGCAAATGGTCGTGGACCGCCGCAACGACAGGACCCGCTCC
TGGCAGAACTTTCACTTTACTCCGCGTCCAGTGGTCTATATCCGCATTGT
GGGCACACGCAACACAGCGAATGAGATCTTCCACTGCGTCCACCTCGAAT
GTCCGACCCAGGACAAAAACTACTTAAAGAAGATAGCCGACATGGAGAAG
GAGCGCGAGAAGAGGGAGAAGGAGAAGAAGACGGCCAAGACTGACGATGA
CAATATTGCCTCTACCTCGGGATCCTCGTTGGCTTCAGGCCATGCTGAAA
GTCCCTCCACTTCCTCCAGCAGCAGCCAAAGCGTTTTAAGGTCCATCCAC
TGGCCGCCACAGACAAGGGAAGTGGCCGTTGCCCCACTCACTCCGCCAGC
ACTCTCCCCGCCCGGCACGCCAGCACTTCCGGCTCCTCTGACCCCGGCAA
CCTCGTCGCCGCATAACAACCATGAACAAAATCAGCCAAGTAATATCAGT
GCAGACGCAAGCCACCACACCAGTCCAAGTTCAAGGAGCAACCCCAGTCC
CAGCCTAAGTAGGAGCAGAAGCCAGAGTGCGGAGTTGGAGCCAGTGCCGC
CATTGGTTGAGCTTGACACCAGGGAGACGCTCTGAAAGCTTTCTAGACCA
T
BS30627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BTBD9-RB | 2169 | CG1826-PB | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| BTBD9-RA | 2169 | CG1826-PA | 1..2169 | 17..2185 | 10845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BTBD9-RB | 3400 | CG1826-RB | 150..2318 | 17..2185 | 10845 | 100 | Plus |
| BTBD9-RA | 2980 | CG1826-RA | 185..2353 | 17..2185 | 10845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10769346..10769989 | 588..1231 | 3220 | 100 | Plus |
| X | 23542271 | X | 10768721..10769294 | 17..590 | 2870 | 100 | Plus |
| X | 23542271 | X | 10770561..10771072 | 1674..2185 | 2560 | 100 | Plus |
| X | 23542271 | X | 10770054..10770501 | 1228..1675 | 2240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:57:23 has no hits.
BS30627.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:17 Download gff for
BS30627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1826-RA | 185..2352 | 17..2184 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:47 Download gff for
BS30627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BTBD9-RA | 185..2352 | 17..2184 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:13 Download gff for
BS30627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BTBD9-RA | 185..2352 | 17..2184 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:13 Download gff for
BS30627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10768721..10769293 | 17..589 | 100 | -> | Plus |
| X | 10769348..10769986 | 590..1228 | 100 | -> | Plus |
| X | 10770055..10770501 | 1229..1675 | 100 | -> | Plus |
| X | 10770563..10771071 | 1676..2184 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:47 Download gff for
BS30627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10662754..10663326 | 17..589 | 100 | -> | Plus |
| arm_X | 10663381..10664019 | 590..1228 | 100 | -> | Plus |
| arm_X | 10664088..10664534 | 1229..1675 | 100 | -> | Plus |
| arm_X | 10664596..10665104 | 1676..2184 | 100 | | Plus |
BS30627.pep Sequence
Translation from 16 to 2184
> BS30627.pep
MSSQGHHKMSGGGKKGAMEQDYTDVVDLGDRFSADMARLCMNEQYADVEF
IVEEERIPAHRVILAARSEYFRALLYGGMAETTQRQIPLEVPLEAFKVLL
RYIYSGTLLLSTLDEDSTIDVLGMANQYGFQDLEMAISNYLRQYLALDNV
CMILDAARLYNLEELTEVCLMFMDRNAGDLLLHNSFNTLSKESLEEVLRR
DCFFAPEVQIFLAVWKWSRFNSNVDFKSVVSYVRLPLMNLEHLLQVVRPS
GILDPDKILDAIDERSTSKALPYRAALWPEENVAAETFLSRCIQGECRDA
LLDGDVTTYDMENGYTRHCITDSKDAGIVVELGTFCMINHIRMLLWDRDS
RAYSYYVEVSGDQQHWDRVVDYSDYHCRSWQYLYFEARPVRFIRLVGTQN
TVNRVFHVVGLEAMHTAKVPRLVNHFVAPKTNVATVEMSAIVTDGVSRTR
NALINGDYVRYDWDSGYTCHQLGSGEIVVRLGQPYYLGSMRLLLWDCDDR
TYSFYIEISTNRKEWQMVVDRRNDRTRSWQNFHFTPRPVVYIRIVGTRNT
ANEIFHCVHLECPTQDKNYLKKIADMEKEREKREKEKKTAKTDDDNIAST
SGSSLASGHAESPSTSSSSSQSVLRSIHWPPQTREVAVAPLTPPALSPPG
TPALPAPLTPATSSPHNNHEQNQPSNISADASHHTSPSSRSNPSPSLSRS
RSQSAELEPVPPLVELDTRETL*
BS30627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BTBD9-PB | 722 | CG1826-PB | 1..722 | 1..722 | 3794 | 100 | Plus |
| BTBD9-PA | 722 | CG1826-PA | 1..722 | 1..722 | 3794 | 100 | Plus |
| lute-PA | 677 | CG5319-PA | 203..442 | 37..260 | 245 | 29.6 | Plus |
| lute-PC | 727 | CG43226-PC | 253..492 | 37..260 | 245 | 29.6 | Plus |
| lute-PB | 727 | CG43226-PB | 253..492 | 37..260 | 245 | 29.6 | Plus |
