BS30629.complete Sequence
2432 bp assembled on 2012-09-05
GenBank Submission: KX800462
> BS30629.complete
GAAGTTATCAGTCGACATGTCTTTCTCCAAGGCCAAGTTGAAGCGTTTCA
ACGACGTGGATGTGGCCATCTGCGGTTCGCCAGCTGCGTCCAACAGCTCG
GCGGGATCGGCGGGCAGTGCCACGCCCACCGCGTCTTCGGCAGCCGCTGC
TCCGCCAACCGTTCAACCGGAACGCAAGGAGCAGATCGAGAAGTTCTTCA
AGGACGCCGTGCGTTTCGCGTCCAGCTCGAAGGAGGCCAAGGAATTTGCC
ATTCCCAAGGAGGACAAAAAGTCAAAGGGATTACGTCTGTTCCGTACTCC
TTCGTTGCCGCAGCGCCTACGCTTCCGTCCGACTCCCAGTCACACGGATA
CGGCCACCGGAAGCGGAAGTGGCGCCTCAACAGCGGCATCCACTCCTCTG
CATTCGGCAGCCACCACGCCCGTAAAGGAGGCCAAGTCAGCCAGCCGTCT
GAAGGGCAAGGAGGCACTCCAGTACGAAATCCGTCACAAAAACGAACTGA
TCGAGAGCCAGTTGAGCCAACTGGACGTGCTGCGCCGCCATGTGGATCAG
TTGAAGGAAGCCGAGGCCAAGTTGCGCGAGGAGCATGAGTTGGCTACCTC
CAAGACAGATCGGCTCATCGAAGCCCTGACCAGTGAGAATTTATCGCACA
AAGCTCTGAACGAGCAGATGGGCCAGGAGCACGCTGATCTTTTGGAGCGT
TTGGCCGCCATGGAGCAGCAGTTGCAGCAACAGCACGACGAGCATGAAAG
GCAAGTGGAGGCGTTGGTTGCCGAGAGCGAGGCACTGCGTCTGGCCAACG
AGCTGCTGCAGACAGCGAATGAGGATCGTCAAAAGGTGGAGGAGCAGCTG
CAGGCACAACTCTCTGCTCTTCAGGCGGATGTGGCTCAGGCCCGCGAGCA
CTGCAGCCTGGAGCAGGCAAAGACCGCCGAGAACATTGAGCTGGTAGAGA
ATCTCCAGAAGACCAATGCCTCCCTGCTGGCCGACGTGGTCCAGCTGAAG
CAGCAGATCGAACAGGATGCCCTGTCCTACGGACAGGAGGCCAAGAGCTG
CCAGGCGGAACTGGAGTGTCTGAAGGTGGAGCGCAACACCCTGAAGAATG
ACTTGGCCAACAAGTGCACTCTGATCCGCTCGCTGCAAGACGAGCTTCTC
GACAAGAACTGCGAGATCGATGCTCACTGCGATACCATTCGCCAGCTGTG
CCGGGAACAGGCTCGCCACACCGAGCAGCAGCAGGCGGTGGCCAAGGTGC
AGCAGCAGGTTGAGAGCGACCTAGAGAGCGCGGTGGAGCGCGAGAAGAGC
TACTGGCGCGCCGAGCTGGACAAGCGCCAGAAGCTGGCCGAGAACGAGCT
GATCAAGATCGAGCTGGAGAAGCAGGACGTGATGGTGCTGCTGGAGACCA
CCAATGATATGCTGCGCATGCGCGACGAGAAGCTGCAGAAATGCGAAGAG
CAGTTGCGCAACGGCATCGACTACTACATCCAGCTGAGCGACGCACTGCA
GCAGCAGCTGGTGCAGCTGAAGCAGGACATGGCCAAGACGATCACCGAGA
AGTACAACTACCAGCTGACTTTGACCAACACCCGGGCCACCGTCAACATT
CTGATGGAGCGTCTAAAGAAGTCCGATGCGGATGTGGAGCAGTACCGAGC
GGAGCTGGAATCGGTGCAGTTGGCCAAGGGAGCGCTGGAGCAGAGCTATC
TGGTGTTGCAGGCGGACGCAGAGCAACTGCGCCAGCAATTGACCGAGAGC
CAGGATGCGCTCAACGCACTGAGATCCTCCTCCCAGACGCTGCAGAGCGA
GGAGCGCATCGATGGCGACGCCCAGTTGGCCCACTACCACGAGCTGCGCC
GCAAGGACGAGACGCGCGAGGCCTACATGGTGGACATGAAGAAGGCGCTC
GATGAATTCGCCACCGTGCTGCAGTTCGCCCAATTGGAGCTGGACAACAA
GGAGCAGATGCTTGTTAAGGTGCGCGAGGAGTGCGAACAGCTCAAGCTGG
AGAACATTGCCCTCAAGTCCAAGCAACCGGGATCCGCCTCTCTGCTGGGA
ACACCTGGCAAGGCCAACCGCTCCAATACCACCGATCTGGAGAAGATCGA
GGATCTGCTGTGCGACTCGGAGCTGCGATCCGACTGCGAGAAGATCACCA
CGTGGCTGCTCAACTCCTCGGACAAGTGCGTGCGCCAGGATACCACCAGC
GAGATCAACGAGCTCCTGTCCGCCGGCAAGTCCTCGCCCCGTCCCGCCCC
CCGCACACCCAAGGCGCCGCACACCCCGCGCAGTCCGCGCACCCCCCACA
CCCCACGAACACCACGATCGGCGGCCAGCACTCCCAAGAAGACTGTCCTG
TTCGCCGGCAAGGAGAACGTGCCCAGTCCGCCACAGAAGCAGGTGCTCAA
GGCGCGCAACATCTAGAAGCTTTCTAGACCAT
BS30629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mira-RB | 2400 | CG12249-PB | 1..2400 | 17..2416 | 12000 | 100 | Plus |
| mira-RC | 2418 | CG12249-PC | 1..2418 | 17..2416 | 11785 | 99.3 | Plus |
| mira-RA | 2490 | CG12249-PA | 1..1786 | 17..1802 | 8930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mira-RB | 3232 | CG12249-RB | 448..2847 | 17..2416 | 12000 | 100 | Plus |
| mira-RC | 2893 | CG12249-RC | 326..2743 | 17..2416 | 11785 | 99.3 | Plus |
| mira-RA | 2965 | CG12249-RA | 326..2111 | 17..1802 | 8930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19932888..19934673 | 1802..17 | 8930 | 100 | Minus |
| 3R | 32079331 | 3R | 19932184..19932800 | 2416..1800 | 3085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:56:24 has no hits.
BS30629.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-05 12:20:43 Download gff for
BS30629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mira-RB | 448..2847 | 17..2416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:39 Download gff for
BS30629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mira-RB | 448..2847 | 17..2416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:22 Download gff for
BS30629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mira-RB | 448..2847 | 17..2416 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:22 Download gff for
BS30629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19932184..19932798 | 1802..2416 | 100 | <- | Minus |
| 3R | 19932889..19934673 | 17..1801 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:39 Download gff for
BS30629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15757906..15758520 | 1802..2416 | 100 | <- | Minus |
| arm_3R | 15758611..15760395 | 17..1801 | 100 | | Minus |
BS30629.pep Sequence
Translation from 16 to 2415
> BS30629.pep
MSFSKAKLKRFNDVDVAICGSPAASNSSAGSAGSATPTASSAAAAPPTVQ
PERKEQIEKFFKDAVRFASSSKEAKEFAIPKEDKKSKGLRLFRTPSLPQR
LRFRPTPSHTDTATGSGSGASTAASTPLHSAATTPVKEAKSASRLKGKEA
LQYEIRHKNELIESQLSQLDVLRRHVDQLKEAEAKLREEHELATSKTDRL
IEALTSENLSHKALNEQMGQEHADLLERLAAMEQQLQQQHDEHERQVEAL
VAESEALRLANELLQTANEDRQKVEEQLQAQLSALQADVAQAREHCSLEQ
AKTAENIELVENLQKTNASLLADVVQLKQQIEQDALSYGQEAKSCQAELE
CLKVERNTLKNDLANKCTLIRSLQDELLDKNCEIDAHCDTIRQLCREQAR
HTEQQQAVAKVQQQVESDLESAVEREKSYWRAELDKRQKLAENELIKIEL
EKQDVMVLLETTNDMLRMRDEKLQKCEEQLRNGIDYYIQLSDALQQQLVQ
LKQDMAKTITEKYNYQLTLTNTRATVNILMERLKKSDADVEQYRAELESV
QLAKGALEQSYLVLQADAEQLRQQLTESQDALNALRSSSQTLQSEERIDG
DAQLAHYHELRRKDETREAYMVDMKKALDEFATVLQFAQLELDNKEQMLV
KVREECEQLKLENIALKSKQPGSASLLGTPGKANRSNTTDLEKIEDLLCD
SELRSDCEKITTWLLNSSDKCVRQDTTSEINELLSAGKSSPRPAPRTPKA
PHTPRSPRTPHTPRTPRSAASTPKKTVLFAGKENVPSPPQKQVLKARNI*
BS30629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mira-PB | 799 | CG12249-PB | 1..799 | 1..799 | 3984 | 100 | Plus |
| mira-PC | 805 | CG12249-PC | 1..805 | 1..799 | 3967 | 99.3 | Plus |
| mira-PA | 829 | CG12249-PA | 1..829 | 1..799 | 3943 | 96.4 | Plus |
| zip-PH | 1964 | CG15792-PH | 1006..1576 | 158..729 | 237 | 22.1 | Plus |
| zip-PG | 1971 | CG15792-PG | 998..1568 | 158..729 | 237 | 22.1 | Plus |
| zip-PH | 1964 | CG15792-PH | 1306..1911 | 138..746 | 209 | 21.2 | Plus |
| zip-PH | 1964 | CG15792-PH | 1167..1794 | 121..683 | 190 | 21.2 | Plus |
