BS30630.complete Sequence
1628 bp assembled on 2012-07-10
GenBank Submission: KX802471
> BS30630.complete
GAAGTTATCAGTCGACATGTCTGCGGCCGAACTCGAGGCGGAGGCTTCAG
CCCAGGAGCAACAATCCCAGCAACAACAACAAAATCAATCACAAAGCGAG
GAGATAAATACAAACACTGCCATCAATGCAAATGCAACCACAACAAATAG
CTACAACAATAATTTAGATACGGAAACCCAGCTTCAGATGCACCAGGATC
CGCAGCAGCAGCAGGAACTCGAGGGCAATAGCAACAATGGCATCACAGGA
CTCGGCCTCAGTCTGATGAACTCCTCACCGCCGCCGCACAGCTACCGACA
TTCGCGGGCCTATCGCCACTTCAAGAATCCGCCACAGCCCCACATGTGCA
TCCGCACCACCACGGAGGCGGGCGAGGAGCTCTTCATCAATGTCCTCAGC
TGGACGCGCATTGTGATACCGCAGGAGCCCAGCGATCCCATTCCCCTTTA
CGGAGGCATGCGGGTACCGCCTGGCAGCCCACGCAGTCCTCCCATTGTCT
TTGCCGTAATGGCCAATCCGGAGGTGCTCAAAGACTCCGGACGTCACAGC
AAAGATCCTGAGGAGCGACGAGCTATGGTGGAGCTGATGTGCGACTTTGT
GGAGGCTATGAATCCAGGCGTGAAATTAGTCAGAAACGCCGTAATACTCA
AGGATCGCGATATCTCCGGCGAGCTGAAGGATGTCTGGAATGCCGTTCAG
GCGCAGCGCGATCGCGAGAGGGAGGAGCAGATGATGCAGCAGCGCCAGCA
GCAGCACTACCAGAACATCACCACGCAACAGATGTTTCCCAAATCGCCGG
ATGCATCGCGGGCAGCTAGTGCTGGTGCTGCAGTGAACGAGGCCAGCTCG
CCGCCGGCTCACTTGTCTGAGCCGCTGCTGGTAGAGCAGGGAAATGGCAA
TGGCAATGGCATCACCCTGGCCGTGTTTGCCCAGCAGCTGGACAACAAAG
TGGCCAGCGAGCAGGGTGAGCAGCAGGAGCAATCGCCAGTTTCGGAGGAT
GCTTGCGTGGATCAAACGGATGCAGGCAGCTCGCTGAATGGATCAACAAC
TGTGCTGGACAATCAGCCGGTGGCAGTGGAGAACGAACCAGAAGTAAAGG
TTGCACCACCGGCAGCCACAAATGGTGCTAGCACTCCCACACCCAGCCAC
GCAACACCCACAGTAACAGCCACAGCCACATCATCGCCCAGTCCAACTCC
AACTCCCGTTGTTGCTCCCGTCGTTACAGCAACTCCTCCACCTGCTGCTC
CCGCAAAGAAGGAGAAACTGGGCGGCTTCCTGCCCAACGGCTGCATCTTC
CCGCGCTTCAAGAACAACAAGCACAAGGACAAGGACAATAGTCACAAGGA
GGGCAAGAGCAAAGAGAAGACCCTGCTGAATGCGCTGAAAAAGAGCAAAG
AGAAGAAGGTGGCGCCCAGTGAACAGCCGACAGAAAAAGCCGCCGCCTCG
GACAACGGAACAACGCAGTACGAGAAGAACTGCATCAACAATCTGGAGTG
CGAGGTGCAGAAGCTGGACTTGAACAGCGGCACCAATGGCGACAATAGCA
TGTTCATCAAGCTGAAAGTTTCGCCGGCCAATGCCACAGCAGCGGCAGCG
GCGGCCAAGTAGAAGCTTTCTAGACCAT
BS30630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4022-RC | 1596 | CG4022-PC | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG4022-RB | 1596 | CG4022-PB | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG4022-RA | 1596 | CG4022-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4022-RC | 4262 | CG4022-RC | 632..2229 | 16..1613 | 7990 | 100 | Plus |
| CG4022-RB | 2778 | CG4022-RB | 686..2283 | 16..1613 | 7990 | 100 | Plus |
| CG4022-RA | 2394 | CG4022-RA | 776..2373 | 16..1613 | 7990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9408212..9409194 | 1613..631 | 4915 | 100 | Minus |
| 3L | 28110227 | 3L | 9409517..9409967 | 466..16 | 2255 | 100 | Minus |
| 3L | 28110227 | 3L | 9409263..9409433 | 633..463 | 855 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6888 | 59..245 | 188 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2533 | 53..236 | 182 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2992 | 53..248 | 171 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2494 | 53..161 | 151 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1117 | 726..781 | 135 | 75.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1127..1256 | 53..176 | 133 | 59.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3417 | 53..182 | 122 | 58.5 | Plus |
BS30630.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-10 14:03:35 Download gff for
BS30630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 776..2371 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:10 Download gff for
BS30630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 777..2372 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:29 Download gff for
BS30630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 777..2372 | 17..1612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:29 Download gff for
BS30630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9408213..9409191 | 634..1612 | 100 | <- | Minus |
| 3L | 9409263..9409432 | 464..633 | 100 | <- | Minus |
| 3L | 9409520..9409966 | 17..463 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:10 Download gff for
BS30630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9402363..9402532 | 464..633 | 100 | <- | Minus |
| arm_3L | 9401313..9402291 | 634..1612 | 100 | <- | Minus |
| arm_3L | 9402620..9403066 | 17..463 | 100 | | Minus |
BS30630.pep Sequence
Translation from 16 to 1611
> BS30630.pep
MSAAELEAEASAQEQQSQQQQQNQSQSEEINTNTAINANATTTNSYNNNL
DTETQLQMHQDPQQQQELEGNSNNGITGLGLSLMNSSPPPHSYRHSRAYR
HFKNPPQPHMCIRTTTEAGEELFINVLSWTRIVIPQEPSDPIPLYGGMRV
PPGSPRSPPIVFAVMANPEVLKDSGRHSKDPEERRAMVELMCDFVEAMNP
GVKLVRNAVILKDRDISGELKDVWNAVQAQRDREREEQMMQQRQQQHYQN
ITTQQMFPKSPDASRAASAGAAVNEASSPPAHLSEPLLVEQGNGNGNGIT
LAVFAQQLDNKVASEQGEQQEQSPVSEDACVDQTDAGSSLNGSTTVLDNQ
PVAVENEPEVKVAPPAATNGASTPTPSHATPTVTATATSSPSPTPTPVVA
PVVTATPPPAAPAKKEKLGGFLPNGCIFPRFKNNKHKDKDNSHKEGKSKE
KTLLNALKKSKEKKVAPSEQPTEKAAASDNGTTQYEKNCINNLECEVQKL
DLNSGTNGDNSMFIKLKVSPANATAAAAAAK*
BS30630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4022-PC | 531 | CG4022-PC | 1..531 | 1..531 | 2749 | 100 | Plus |
| CG4022-PB | 531 | CG4022-PB | 1..531 | 1..531 | 2749 | 100 | Plus |
| CG4022-PA | 531 | CG4022-PA | 1..531 | 1..531 | 2749 | 100 | Plus |
