BS30631.complete Sequence
3959 bp assembled on 2012-09-11
GenBank Submission: KX805979
> BS30631.complete
GAAGTTATCAGTCGACATGGATTTCCTCGCGAATATCATCAAAAGACCCA
AAAGCATCGCCACCACTGGCATCAGCACCAATCAGCCAACGACAATGGAA
GCCCTAGAAGCTGCTAGTCCCGCTGATGAATGTTCTACACCAAGGGATAA
GGGAGGAGTTACACTTGTATCCGCGCACCTGGACTCGTTACTAGAGTCCG
CCTCTGAGGAGCTGCAACGACTGGAGGGAAAGCACTGTGAACTATTTATG
GAATCCATCTCGAACCCACTCCCAGCCCCCGAGGACAGCACTGATAGTAG
AGAAGAAATACAGAAATTTCTAAGCGAAATAAACTTCAATCTGAACCAAG
TGAGTGCTAACGAAATGGAGCACTTGCAAGCCATGAGTGGCGAGCTGAGT
CCGTTGGCGGTGAAGCCCAGTCCCAAGCCAACGAGCATGGATCAACAGAA
GGCAATGGCGGCAGCTCTGGGGCATCAGACGGCGGTACCCGGTGGACTTA
AGCCAGAAGACGACCTCGTTCCAAAGTTTGGAGGTCTTCCCGAGTTCGAT
GAGACGCAAATACCGGAACTAGCTCCTTTAAGTACCGATATGGATACTCA
ACTGAAATCCAACCATTCGGATTCGGATGTTTTTGTCGAGTGTTTATCGC
TTCATAGCGAGCGCTACACCGGAGATCGATCGGAGTTAGAGGCATATTCA
AGTGCCCTTAATGATGTTTTGGAGCAGCAGCTGTCCATGACCTCAGTTTC
TACACTGGGAGCTGAATTCAACGATCCTTTGGCAGTTAGCCAGCACAACA
ACGTCAGCTATGAAGCCATGGATGTGGATGACCTAAACGAAACCATGGAA
ATGTTAAAGGACGTCTTGAATGCGGAAGACCGTCATCTTATGCAAACGCA
TATTCTCAGCGTAACCCAGTCAAAACCAGAGAATAATTTTGTGCACTATC
ATCCAAATCAGGAGCAAAATAGGGTTGAACTAGACCAGTTAGCCAAACAC
TCTAAACCCAATAGTGATGCAAAGGAATCAGAATCATTGGTAGAATCAGT
ACTGTCTGAGGAGTCTGGTACACAATCCTTTGAGCCGAAGCTCACCTTAT
CTGCCTTGGACTCTACGAAAGACTTAGCTAAGCATCAAGAGGAAATGCAA
ACAAATACAAAAGATATATTTCAGAAAGAGAAGCACCACCCGGTCAGTAG
TGCTCAGGTGAAGGACGCACAAAATCCTAAGGAGCCTGAAAAGGCCTTAA
ATCTCAAAGAGGCTTCTTCAGAACTGTCCACAAAATCAGCAAAATCTCTA
GAATACCCTAATCAAGAGAAGCAATTTTCGGTGGCAGTAGAATCAATGGA
GAGACCATGCACTGCCATCAGCCTTGAGCAAAATGCATCCCCAGCTATGG
AGGCAACTGAAGACAGGACTGTGGAGGAGCTTGATCAAATGGATGTGGAT
GAATCCATGAAAGTGGATGATGCCACAGTGCTTAACTCATGTCGGCAGGA
GCAAATTAATGCTCATTCTCCCGTTTCAAGCAAATTTTTCTTAAAACTCT
GCGTTCAAAATGATACGGATTGTCAAGATAATAAAATGGATCAAAAAACT
GCAGGAAAAGAAAGTGCATTAAAGATGACTGAAATAGAGCTGCCTGTAGA
ATCTGTCCCATCAGCTTCGCTCTCACCGCCGACACCCGCACTTCAAGCAA
AAATTATCGAACTTTCCCTTTCCCCGCCCATACCTACACATCGCCCAAAA
ACAGCGGAGGAACTAGAGTTCCTGGCTTTGAGGGAGCTGCCTTTGCCTGA
TGGTGTCTCGACGGCGGGGAAGGTGGAATGTAAGCAGCTATCACACGGCC
TGGTACCCATTGTGGCAGTCTTACCAACGCCACTTTACTTGGATCTGAAA
GGGAATACAACCACTGCAAGCCTTCCAGAACCGACTTCGCCCAGTTTCCC
CATCAAAGAACCTGCTGAAAAACAGTCCCACTTTCCACGCTCACCGCGTG
CTCAGCTCGAGCAAAAGGACATGCCCTATTTGGAAGAGGCTGTGGTAGAA
CGTTCATCACATCGCAAGCAAAGCGATTTCGGAGTCATAGCGAAATCACC
AATAGTCTTTGAGTTAACACAACCGAGTCCTGAGAAGCAGCACCTCAACG
AAACCTTGCCAATGAGCGAGATTTCTCCCACTTCGTCAAATATGACCTTT
GACAGCGGAAGCATTACGGAGGACAAATCACAGAAGGGTACAGAGAATAT
TGAGCCTTCTTCCACCCTTGCCGTAAGTCTGGGATCGGTTGATGATAAGC
AGCGGCGCACTTTCTCGGTGGTTCAGCCCACGAAGGAAGAGGAGGAGGCC
AAATCGCGTCGGACTTTCTGTATGGAAAATGAGAACCCTCGACGCACCTT
CTGCATGCAGCAGAATGCTTCTCCAGCGGTGGAGGCTACCGAAGACACCG
GGGCTGATGAAGTTATGGATGTGGATATCTCCATGAGGGCAGATGAAGTA
GCCGTGATGAAGTCGCATCAGCAAACTTGGAAGGAACGCCAAGCACCAAT
TTCAAATTCACCACCAATTCCTACTCACCAACGTTTAAATAGACCTCCTG
AGGCGATTTCTCCAGTGTCCCCATTGGGAAATGGCACCGTTGTGTTGGAG
GAGCAAACTCTCTCTGCTAAAGAGCAAGCCACGCTAAGTGCCAGCGATGA
GAAGGACGATGTTTTCTTGGAGCACTTTGGTGCAATTTCCCCAGTTTCGG
ATGACATGTTTAAAACCAGCAGCGCTTCCAACAATCAAGCAAAGTTTAGG
GTCAATGCTGATGAAGAAACCGGAGGCAAAGGCGCTTCTGCGATGATCAG
GAAGAGAAGTGGTACAGCTGGCGAGCAGGAAGAGATCTTTGATGCCGAAT
TCCATGATGGCGTCAACAACCAAAACCGCAGCAATAGTGTGCCTATTGAC
CGCAGTTCGCTGCTGTTGAAGTTTGATCCCCTCCTTGGAGCCCCTGTTCC
CGTTAATCATCCGAATCAGCAGGAGCAGGCGCTGCAGAATATTCTGGGAT
CGAACCAGCACCAGAACCGGCTCCTTAGCCCAACATTGGAGGAGCACGAA
ACAAGTGACGGGAACCAGTCTTTTGGAGTAATATCGAGTGCCAAAGATAC
AGCCAAGAAATGGGATTTTAAGCCACCTGTGGATAGAACAAAAAAGCATG
TTAAAATGAGTGTGGACGTCATTGATAACGATTGCAATAAAACCTTCGAT
AATTCCAACACTAATACGGAGGATAAGACGCACAACTACAACGATATGGA
TGAGCTGGAGAAGAAAATCAAAAATGAAGTAACGAGGTCCGAAGACATTG
AAAAGAAGCTCAAGGAGGGAGAGCTGCGCGAGGAGGCTCTGATCAAGCGT
ATTACAGAAAAGGACAAAACAAATGCAAAACTAAACGGTGTCATTGAGGC
ATATGAGAAGGCAATTGCAGAGCTCATTAGTGAGAAGGAGCAGCAAGCAC
AGCTTCACGAACGGCAGTTGCAGGAAGTCCAGGCAGACCGGGACGCAAAT
TACCATCACTTAACATCGTTGGAGACGACATTTTCCGATCTGCATGTGAA
ATACGAGAAAAGCAAAGAGATGACCTCGCAGCTTAAAAGTAACGAGGAAT
CGCTTCTGGCAGAGCGAAAGCAGATGATGGACAATCTGCGGTTGCAGGAA
CAGCGCTACGACAAGATGAAGAACCATGCCATGCAGCAGCTGGAAATTGC
CAACAAAAAGCTGGACACCTACTCGAGGGAGCATGCCGACGAGACGAAAA
AACTTAAAGCTTTACTTAAGAAGGAGGAGATCTCGCGGGTCTCGATGACG
GAGCAGCTGCAACAGAAGTCCCGCGAAAACGCTGATCTGCTCAAGATCTG
CGAAGAGCTCATCTATGGCAAGGGACAAGGTGGTAGTAGTTAAAAGCTTT
CTAGACCAT
BS30631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tacc-RC | 3927 | CG9765-PC | 1..3927 | 17..3943 | 19635 | 100 | Plus |
tacc-RJ | 3642 | CG9765-PJ | 92..3642 | 393..3943 | 17755 | 100 | Plus |
tacc-RD | 3882 | CG9765-PD | 334..3882 | 395..3943 | 17745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tacc-RC | 4906 | CG9765-RC | 240..4168 | 16..3944 | 19645 | 100 | Plus |
tacc-RJ | 4554 | CG9765-RJ | 265..3816 | 393..3944 | 17760 | 100 | Plus |
tacc-RD | 4861 | CG9765-RD | 574..4123 | 395..3944 | 17750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4741851..4744182 | 2928..597 | 11660 | 100 | Minus |
3R | 32079331 | 3R | 4745797..4746175 | 394..16 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 4737473..4737738 | 3193..2928 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 4744464..4744667 | 596..393 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 4735150..4735346 | 3944..3748 | 985 | 100 | Minus |
3R | 32079331 | 3R | 4735641..4735803 | 3598..3436 | 815 | 100 | Minus |
3R | 32079331 | 3R | 4735408..4735557 | 3747..3598 | 750 | 100 | Minus |
3R | 32079331 | 3R | 4737023..4737127 | 3435..3331 | 525 | 100 | Minus |
3R | 32079331 | 3R | 4737181..4737252 | 3330..3259 | 360 | 100 | Minus |
3R | 32079331 | 3R | 4737314..4737378 | 3258..3194 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:03:52 has no hits.
BS30631.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-11 10:39:56 Download gff for
BS30631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tacc-RC | 241..4165 | 17..3941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:25 Download gff for
BS30631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tacc-RC | 241..4165 | 17..3941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:30 Download gff for
BS30631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tacc-RC | 241..4165 | 17..3941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:30 Download gff for
BS30631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4744464..4744665 | 395..596 | 100 | <- | Minus |
3R | 4741852..4744182 | 597..2927 | 100 | <- | Minus |
3R | 4735153..4735346 | 3748..3941 | 100 | <- | Minus |
3R | 4735408..4735557 | 3598..3747 | 100 | <- | Minus |
3R | 4735642..4735803 | 3436..3597 | 100 | <- | Minus |
3R | 4737023..4737127 | 3331..3435 | 100 | <- | Minus |
3R | 4737181..4737252 | 3259..3330 | 100 | <- | Minus |
3R | 4737314..4737378 | 3194..3258 | 100 | <- | Minus |
3R | 4737473..4737738 | 2928..3193 | 100 | <- | Minus |
3R | 4745797..4746174 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:25 Download gff for
BS30631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 562745..562849 | 3331..3435 | 100 | <- | Minus |
arm_3R | 562903..562974 | 3259..3330 | 100 | <- | Minus |
arm_3R | 563036..563100 | 3194..3258 | 100 | <- | Minus |
arm_3R | 563195..563460 | 2928..3193 | 100 | <- | Minus |
arm_3R | 560875..561068 | 3748..3941 | 100 | <- | Minus |
arm_3R | 561130..561279 | 3598..3747 | 100 | <- | Minus |
arm_3R | 561364..561525 | 3436..3597 | 100 | <- | Minus |
arm_3R | 567574..569904 | 597..2927 | 100 | <- | Minus |
arm_3R | 570186..570387 | 395..596 | 100 | <- | Minus |
arm_3R | 571519..571896 | 17..394 | 100 | | Minus |
BS30631.pep Sequence
Translation from 16 to 3942
> BS30631.pep
MDFLANIIKRPKSIATTGISTNQPTTMEALEAASPADECSTPRDKGGVTL
VSAHLDSLLESASEELQRLEGKHCELFMESISNPLPAPEDSTDSREEIQK
FLSEINFNLNQVSANEMEHLQAMSGELSPLAVKPSPKPTSMDQQKAMAAA
LGHQTAVPGGLKPEDDLVPKFGGLPEFDETQIPELAPLSTDMDTQLKSNH
SDSDVFVECLSLHSERYTGDRSELEAYSSALNDVLEQQLSMTSVSTLGAE
FNDPLAVSQHNNVSYEAMDVDDLNETMEMLKDVLNAEDRHLMQTHILSVT
QSKPENNFVHYHPNQEQNRVELDQLAKHSKPNSDAKESESLVESVLSEES
GTQSFEPKLTLSALDSTKDLAKHQEEMQTNTKDIFQKEKHHPVSSAQVKD
AQNPKEPEKALNLKEASSELSTKSAKSLEYPNQEKQFSVAVESMERPCTA
ISLEQNASPAMEATEDRTVEELDQMDVDESMKVDDATVLNSCRQEQINAH
SPVSSKFFLKLCVQNDTDCQDNKMDQKTAGKESALKMTEIELPVESVPSA
SLSPPTPALQAKIIELSLSPPIPTHRPKTAEELEFLALRELPLPDGVSTA
GKVECKQLSHGLVPIVAVLPTPLYLDLKGNTTTASLPEPTSPSFPIKEPA
EKQSHFPRSPRAQLEQKDMPYLEEAVVERSSHRKQSDFGVIAKSPIVFEL
TQPSPEKQHLNETLPMSEISPTSSNMTFDSGSITEDKSQKGTENIEPSST
LAVSLGSVDDKQRRTFSVVQPTKEEEEAKSRRTFCMENENPRRTFCMQQN
ASPAVEATEDTGADEVMDVDISMRADEVAVMKSHQQTWKERQAPISNSPP
IPTHQRLNRPPEAISPVSPLGNGTVVLEEQTLSAKEQATLSASDEKDDVF
LEHFGAISPVSDDMFKTSSASNNQAKFRVNADEETGGKGASAMIRKRSGT
AGEQEEIFDAEFHDGVNNQNRSNSVPIDRSSLLLKFDPLLGAPVPVNHPN
QQEQALQNILGSNQHQNRLLSPTLEEHETSDGNQSFGVISSAKDTAKKWD
FKPPVDRTKKHVKMSVDVIDNDCNKTFDNSNTNTEDKTHNYNDMDELEKK
IKNEVTRSEDIEKKLKEGELREEALIKRITEKDKTNAKLNGVIEAYEKAI
AELISEKEQQAQLHERQLQEVQADRDANYHHLTSLETTFSDLHVKYEKSK
EMTSQLKSNEESLLAERKQMMDNLRLQEQRYDKMKNHAMQQLEIANKKLD
TYSREHADETKKLKALLKKEEISRVSMTEQLQQKSRENADLLKICEELIY
GKGQGGSS*
BS30631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tacc-PC | 1308 | CG9765-PC | 1..1308 | 1..1308 | 6655 | 100 | Plus |
tacc-PK | 1322 | CG9765-PK | 1..1322 | 1..1308 | 6623 | 98.9 | Plus |
tacc-PM | 1320 | CG9765-PM | 1..1318 | 1..1304 | 6603 | 98.9 | Plus |
tacc-PD | 1293 | CG9765-PD | 1..1293 | 1..1308 | 6555 | 98.9 | Plus |
tacc-PJ | 1213 | CG9765-PJ | 31..1213 | 126..1308 | 6022 | 99.9 | Plus |