BS30642.complete Sequence
1037 bp assembled on 2012-07-09
GenBank Submission: KX805014
> BS30642.complete
GAAGTTATCAGTCGACATGCCCTCCATATGGCTGTTAGTCTCGACGCTGG
CTTTGGTTAGCTGCCAGGACTATCATTACCACCGTCCACAGACTCCTTTC
GTTGCGGAATCTTACCATCAGCACCAGCAGCCTCAAGCCACCAAGTTTGT
GGTGCAGACTTTGGGTCGCACCTACGGTTTGGAAACCCAAAGGGCACCAG
CCATCTATGAGGATTATCAGACGCATATTGTGCAGCTCTTCCAGCAGCGA
CAGGTGCCGCAGTATCATCAGGCTCCCCGCCAACAATTGCACACTTCTAG
CTACCAGAATCCCCTGCTGGTCAGCGCCAACTACCAGGCCGGCACCGTGT
CCTTGGCGCCTCCAGCTCCCGCTGCTCCTGCCCAGCCACTGACCAGCTAT
GGGCCACCTCACCTGCAGCACCAGTCACAGCCTCTGCAACCTCCACCGCA
GACTCCCCAATACTTCCCCCAACAGCAGCAGCCACCTGCAAGCTATTTGC
CACCTCAGCAGCCTGCCCAGAAATTGTTCTTCGGCAATCCGTTTCCCTAT
GCCCCTGTGACGACCGGCTCGGGGCAACAGGTGCTGGATGCAGGACATGG
ATCAGGTGTGGCGCCCAATGAAGTGCAGGCTCAGCTTTTGCAAGCCACCG
GAGCTGCGCCACCACAAACTCGAGTGGGTAACCAGGTGGCTCAGTCGCAG
AGCTCCTCTTTGGATGCCTATGACTACAAGCAGAGCACTCCCGGAGAAAA
CCGAGAGTACCAAAGGTTCGTCACCAGCTGCCCGGGAGGTGGAGCCTGCC
AGCAGAAGGAGTTCAATCCAGGCGAGGTGGATGAGAGCCACCAGCGGGTT
CTGCAGACAGTGCGAGCCAGTACCCAACCTCGAGTGGAGGGCTGCTACAA
GAGCCAGGTGATCTATGTGCCAGCGGGAGCTGCTGTCAATAGTCAGGGTC
AGTTGCGACCAAAGAATCGACGCACTTTCGAGCGCAAGGAGCAGGTCCTC
TCCAGATACCCCTACAACTAAAAGCTTTCTAGACCAT
BS30642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7080-RA | 1005 | CG7080-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7080-RA | 1178 | CG7080-RA | 69..1074 | 17..1022 | 5030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22329466..22330442 | 46..1022 | 4885 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2461 | 323..522 | 130 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 363..512 | 130 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6809 | 392..485 | 118 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1598 | 410..493 | 110 | 61.9 | Plus |
BS30642.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:30 Download gff for
BS30642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 68..1070 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:56 Download gff for
BS30642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 68..1070 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:16 Download gff for
BS30642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 69..1071 | 17..1019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:16 Download gff for
BS30642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22329368..22329397 | 17..46 | 100 | -> | Plus |
| 3R | 22329467..22330439 | 47..1019 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:56 Download gff for
BS30642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18155090..18155119 | 17..46 | 100 | -> | Plus |
| arm_3R | 18155189..18156161 | 47..1019 | 100 | | Plus |
BS30642.pep Sequence
Translation from 16 to 1020
> BS30642.pep
MPSIWLLVSTLALVSCQDYHYHRPQTPFVAESYHQHQQPQATKFVVQTLG
RTYGLETQRAPAIYEDYQTHIVQLFQQRQVPQYHQAPRQQLHTSSYQNPL
LVSANYQAGTVSLAPPAPAAPAQPLTSYGPPHLQHQSQPLQPPPQTPQYF
PQQQQPPASYLPPQQPAQKLFFGNPFPYAPVTTGSGQQVLDAGHGSGVAP
NEVQAQLLQATGAAPPQTRVGNQVAQSQSSSLDAYDYKQSTPGENREYQR
FVTSCPGGGACQQKEFNPGEVDESHQRVLQTVRASTQPRVEGCYKSQVIY
VPAGAAVNSQGQLRPKNRRTFERKEQVLSRYPYN*
BS30642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7080-PA | 334 | CG7080-PA | 1..334 | 1..334 | 1785 | 100 | Plus |
