BS30903.complete Sequence
6389 bp assembled on 2012-07-27
GenBank Submission: KX803415
> BS30903.complete
GAAGTTATCAGTCGACATGCTAATTTGGCACCTGCTGCTCTGGCCAGCAT
TAATAGCCAGTGCCCCACCGCGGCCCCTGACCGACCAAAAGGCCGAGGTG
GCCAAGCTGCGAAGCGAACTAGAAAAAGCTCTGGAACACGACGATGGAGG
AGCACCACCAGGAGTGGTGGTGGCACCCACGTGGACCCAGCAGGCGGGGC
AAATGCCGCTTGGAAAGACCTCCAAAGTGGTGGTGGACCATAGCTCGCTG
AGCAGCGCCTCCGCCATTCGCCAGGAGATTCAGCAGGCGGTGGCTCACCA
GGGACAGAACCAAGAGGTCCTCCAGCTGGAAGCTCTGCTGAAAGCAAGAG
GCAGCAGCAAGGAGAGCACGGCTCAAGTGTCCACGTCCCGTCAGGAGGTG
CTGGGAGCAACTGTACAGGAAGCCAATGTGGTGGAGTCGCACTCGACATC
GCAGACCGTGGACCTGGAACAACTACAGCGCCTGGAGCTGTCCAAGAGGC
GCACCCGCGACATGCTCGTCCTGGGTCGCATTGAAGAGTTGCTCAACTAC
AGCATGCCGACGGATGTGGATCGCTGGCTGACCCTCCAGGCCAATGGAAG
CGTTTTCCTTGTGGGTCAGCAGCAGGAGGGCCTCCTGGTTCTTTCAGAGG
AATTCACTCCGTTGCAGTCTTATGTCCACCCCTTTCCCATCACCGCCATG
CTGGGAACAGATCGCTGGAACAGAAGGGTGCATATGCAGGAAGGTTTGCT
GGTGATGGCTTCCCAGGATCAGCTTATCTGGCTGCGATTGGAGCCCAGTC
TTGGGCTAAAACCCATCTGGCACTGGACGATTGGCTCGCATGTGACCAAG
ATTAGAGCATTCAACATGGAGGGACAAGATTACCTCGCTCTCGTAGCAAA
TCACACACTTAATATCTACGTCTATGATTTGGAAGCGGAGGAGTTCTGGA
TCGCACAACGTGTGCAAATGGCAGAGACGATCTCCAACCTGGCCATTCTC
GATACAGGGAGGGAACTGCTCTTGGCAGTGGGTCAGTGGGACGAGGTTCT
GATATACGCCTGCACTTCGAAGGGGCAACCGCTGCACTTGCGCCAACAAG
TTGCTGCCCCCGAGGTGGCCGGCGTCACTGCCTTCCAAATGGGCGGACGC
AGCTACCTTGCGCTGGGTGGAATAATGCCGCAGATCCTGGTCTACGTGCA
GGGTCAGCTTGTGCCACGCACCATTCTTGGCCAGAACTTTGGATTTGTAG
ACCACTACCTTCCAATCCCCGTGCGCAGCTACAGAGACGACCTACTTCTG
CTCGTCCAGCATCGAGTTGTCTTTGACACACATTCACTGCTCGTCCTGGA
GGTTTTGGTTTGGAACGGTGAGGCGTTTGAGGCGGGCTTGCCGCCTCCTT
GTGGTACTGCCTATGGGGCGGGCTGCATGTTGGATCAGGATCGTGAGGCT
GGCATTTCAGGAGCTGTCCTGCTCCGCCGCTCGACGAATCAGCCGCCGCT
GGTTGTGGTGCCCAGGAAAGAAGCTCCTACGGGCATTTTTGTGCTGGAAA
CTCAATTGCTGGCTAGGAATTCGGAGACACAGGACCTGCTGGAGATCCGA
CAGTTCATGCAGGATTGGGTGCACGAACAGGAAGAGCTAATCCAGCTGGC
TGAAGAGCTCTTGGCAGAGAAGTCGGAGAGTCAGTACATCGAGGAGCTAT
CAACTCCACTGGTTGTAAGCGAGGGCGGAACCGTTGAGGAACTTTTCGTT
AATGAAGCTCGCTGGACGGGAGCGGATGCTGTTGTGGATGTAAGCTCCCT
GCTTCAGCAGATACTTCTGTTGGACGGGGAAATGAGTTCTAGGCGATCTA
AACGCCAGCCAGAGACGCTGTTCAACTTTCACTACGAGCAACTGGAAGTA
GAAGCCGTTGACTCTGTGGAACTTAACTTGGAGAAGCTCAACCATGAGAC
GTTCTATATCCGAAATGGCTCCCTTGACTTGCATCTGGGAACCCTCAATG
TTCAGCAATTGGAACTTCTGGAAGCTCCGAAATTGGAGCTCGTCCCAGTC
CACGGTGCAGAATCATACAAAATTCTGAAGATGGCTACGGATTTGGACAG
CATTTTTATTAACGAAATGGAGTGGGACAAGCTGCTTCAAGATCTGGTGT
GGCGTCATCAGCCTCTTAAGCTTTCGCAGTTACATGTAGAGGGACCGGTC
ATTTTCGAAGATGTACTAAGTTTGCACTCTCTGAACGACCTAAGCTTTCC
AGGAGACTATCTCTGGTCGCAGGGAAATGAGACGAGTGTTGTCCAGGCGC
CAAAGGAGTTTACGCAAACGCTTTCTGCAAATGCTGTGGACACGACGGGA
ACCATCAACGCCGTATACCCGCATGATGTCATTACTCTCAGTGATTCCCA
GGAATGGCCGGGATTGGTAACCTTCTCGCATTTGGAGGTTTCTGAAGAAT
TGGAGCTCAATGGCAGCGCCCAGGGAAGGCAGTTTGAGGAGGCACCTTTA
AATCCCACTCTGCTGGAGTCACGTGTTATCAGTGCCGACTGCCATTTCGA
ACAGCTTCTTGTGCGTGGCCCTTTGCGGCTGCTTGGAAAGGTGGATAACG
ACAGCTTTGGCTCTCTGCTAGGAGATCTCGTTCAGCGTTCGCCGAACTCT
GCCCAAGAACTACAGATAAGTGGACAAAAGCGAGTTGACCAGCTGCTTCT
GCCAGTGGATGCTCATATCGCAGATAATCAGCTCAGTGGAATTTTCCTCA
ATGACTTTGTTACCAAGCACACGCCACAAACGCTGTCGAATCTGAGTCAA
CTGGGAGGGTATGTTTACTTTCATCAGCTGGAGCTTGGGAAAGAGTCCTC
TTACGACGGAGTTCGCCTAGAGGAACTACTCTCCAAAAGTCTTCGACTAG
ATAGCCCATTTCCCCTGAGTTCTCCCCACACACGCCTTCGGTTTGTTGGA
CATGCCCCAAATTTCACCCGGCTACAAGTTGAAAACACCTTGAACAAGGT
GCCGCTGTCAAGTGGCTACCAGCTGCTCCATGAACCGCTCCATCTAGGCA
GAGCTAACTTTAGTCGTCTGATGGCAGGGCAAGCGCAGGTTAACTATGAT
GTCTCTGGCAACGGGCTACTCAATGGACGAAGCCTGATCCGTATTCTACA
GGAGCAACCTAGGACTTGGTCGGGTGAAGTGCACGTGCAAGAGCTTATTC
TTCCCCAGGGTGTGCAGGCGAACCAGCTGCAGGGCATTAAGGCAGACCTT
CTGCTGGATTTTCTGCAGCAGCTGGACGAGCTCCCGTTGCTGATCCTTCA
GGGTCGCATCCAAGTTGAACGCATCGCCGTCAACGGTTCGGTGCAAGCAG
CTGAAACCTTGAACATGCAACCCTTCCACGAACTTCAGAGGCAAGTCGTT
TGGCTGGATAGGCAGAACGAATTAGGGACGCGTTGGGTTCTGAAAGAATC
TCCCCAGTTCCAGCAGAACCTCCAAGTTCTGGGCAGCTTTAACGAGCGCC
TGCTCCCAGAATTGCTGGATGACATTGTGCTGCGCTCCGACGCGCACGAG
GTGCTGATCGAGGGCACCAAAAGCTTCTTGGCTCCTGTTAACACTAAAGA
GCTTCATCTGGCTGCACTGAATGGGATTCCCTTCAATCACATGGCCAACA
AATTATCTCCGCTGCACCTAACTGGAAATGTCCGCATTCAGGGACGCATC
TTTGTGGAGGACCTGCAGCTAAATGGTCAAGTAAACGGAGATCCGGACAT
TCCTGCTGATCTGCAGAAACTGCTCCGCTGGGATCCAAATGCAGGTGGCT
TTGTGCACCGGGGAGTCGTTGAACTTCCAAAAAAGGAGCTAGAACGCCTA
GTGGTTTTGGGCCACTTGAAAAATCGCAGCCGTGAGCCCGTTCAGGAACT
CTTTGATCAGCTAGTCTTCAAGCAGCAGCGTGGCATACACTTGCATGGTC
ACAAGACTTTCACAGGCCGTCTTCGCATTGAAGATGGAGCTCACATCAAG
TTCTTCAATGGACGCAACCTAGAACAGTTCCTAGAGAATTTAATCTACGT
GGATTCGCAGGGAGAGATACGTTTGGAAACACCTGTTCGCTTTGCGGCTG
ATGTTAAAATGGATCATCTTGAAGCAGATCGCCTTGTACTGTCGGGAGAG
CTGCTTAACGGATGCAATGTGAGCCAGTGGCTCCGGGACACTATTCGTGT
CGATCGCGATTTCCAACAGCCTGAGATTGCGTTTGCAAAGGGATCGCTGG
ATGGTAATTTCTTGGAGGTTGAGGAGCTTAACGAAGTTAATCTCTCACTG
GTTGTCACCCGCTTCACGGAGCAACAGCTAAGCGATCCCCTAGAGGCAGA
TGATTTGCTCCTAGATGGCCAGCTGGTGGTAAGGGGCACTGTTAATGGTT
ACAATCTACCAGAGGAGTATGCCAACACTTTAATGATTAACCCATTGCGA
GAGCAGCAAGTGGATACGCCTTTATTGTTGTCTAACATTTTTGTCACCGG
ACCCCTGGAGGTAACTGCTCCAGTTCATGGTCTAAACATAAGCGATGTGG
CAATTTTGGGCGAAGATCCAGTGCTGCTGCAATCGCCGCTATATTTCGAC
ACTCTGCATGCTCCGTTTTTGAGAGCGCAACAGAACATCAATGGATTTGA
CTTTAGGGCTTGGTACGGAGGAAGCTTATGGGCAAGAGGTCGGGAGCAGC
AGGAAATAAGCGGGAACTGGCGCGTAAAGAAACTGCAGGTGAAGCAGGGT
GATGAGCTGCGACCACGTCGACAAACTGCAGAAGAGAGCTACCGGGAGTT
CTGCGAGGGTTTGGTCAGGATTCTCCTGCCTTACAAGGTCCAGAAGCTGC
GGCGGAGATTTGATTTAAATCAGGAAAGGGATCAGGAGAATATTCGCCGA
GTATTTGCTTTGGAGGCACCCGGGGGCATTAGTTATCTTCTGATCAACGA
GCGAGGTTGCTGGACCCGCATCCACCGCTGGAATGGATCTTTATTCGATC
GATCCGGAGCCTTCAAGAGCGGACCTGTGGACGAGGCAGTTGCTTTACGG
GTGGGAAACACAAGCTCTAACCAGGACTTTGCCTTTATGACCAGCTACGA
GTTGCAGGATGATCAGAACGAGCCAAGCTTGAATTGCAGTGCAGTGAAGC
CCATTCTGCTGAGCTGGAACCTGAACAAAACAAAGAGCACTACTGAGCAC
ATGGAACTATCAGCGGACACCCTAAGAAATCTCAAAGATCAATATGAGCA
GCTTAAAAACCAGCCACTCCCTAATCCCAGTTACCAGCAAGCTTTTAAGT
ATCTGCAGCGTCCCAGCATCAAGTCTCAGCTCGGATCACAGTGGCAAGAG
AATAAACATGAACTGAGTCCTTCGGAGATGGCCAGAATGCGGAGACGTCT
GCTGGACACCTTGGAATTCCGGTTGCAAGCGGAGGTAAACATTACCCAGT
TAAGTATTCCAGAAAGCGACCTATTCGACGAGCACCTTGTGGAGGATTTT
CTGGAGTTGATGCGCCAATTGCGAACCTTGCGCCGGCGTCTAGATACAGA
GACTCTTCCACTGCCAAACACGCCGGCAAGAGTTCTGGCCGCACGGAGTG
CCCAGCTCATCTGGCCCACGTTGCAGGAGTTGCGAGAGGTTTCGAGTGGA
AACGATTCTAGCTTCCAGGAGCAAGTTCTGGAGCAAACGCTGCTGGATGT
GCTGATGCTGGCTAATGAAGAAAATGGCTCGGGGGATGATGAAAAGCTGC
ATGCGGTGATTCAGAGATTGAGAAACCTTAAAGGAGAGCTTCAAGGGCAA
GAGGAAGACGACGAGGGACCTGCTGCCTCCTATTCGGACAGAAATGAGCA
GCGTTTGCCGCTACCAGAAGTCGACTGGAGACCCATTCAAACACTTCGCC
TCGCTGTGGGACCAGCAAACCGTCCCCGACTTCTTTACGCCCGGCTGACC
GTGGTGACACCAACAGACGGTCCTCCGCCCACCACGCCCTCCACTGCGCC
AGCCGCCCACATCCAACTGCATCATGCAAATGGATCGCTCTTTCAAACGC
TAGCAGGGGAGCATGGAGCACGCCATCTGACATCGTTGCGGGTACGAGAT
GAGACGCTGCTAGCATTTATGGAGGGATGCTGCCGTATAAGAGTGCTTAT
CTACCGCGGTGTGCAGGGATTCGTGGACTTTGTCCGTTTCCCCGCACCTG
CCCAAGAAGCTAAGAGCGGAGATGGGGAGGTCTTGCAGTTACTATCCCTA
CGCTTACCTCTCAATCGGCCACCCGGAGCCATGTACTTATTGGCAGTGGT
TCAAGCTCGACGCGTCACTTTCTACGAAGTGGTGGTAGCCGGATTACTAG
AGCCGTGGCTCCAGTGCCCATGAAAGCTTTCTAGACCAT
BS30903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)N-RA | 6357 | CG11411-PA | 1..6357 | 17..6373 | 31755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)N-RA | 6581 | CG11411-RA | 62..6418 | 17..6373 | 31755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1322773..1324809 | 158..2194 | 10170 | 100 | Plus |
| X | 23542271 | X | 1327337..1329275 | 4435..6373 | 9695 | 100 | Plus |
| X | 23542271 | X | 1325242..1327014 | 2454..4226 | 8850 | 99.9 | Plus |
| X | 23542271 | X | 1327069..1327277 | 4227..4435 | 1045 | 100 | Plus |
| X | 23542271 | X | 1322574..1322714 | 17..157 | 705 | 100 | Plus |
| X | 23542271 | X | 1325055..1325185 | 2325..2455 | 655 | 100 | Plus |
| X | 23542271 | X | 1324868..1324997 | 2195..2324 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 790..828 | 2108..2147 | 125 | 82.5 | Plus |
BS30903.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 18:25:39 Download gff for
BS30903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)N-RA | 50..6405 | 17..6372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:42 Download gff for
BS30903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)N-RA | 62..6417 | 17..6372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:23 Download gff for
BS30903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)N-RA | 62..6417 | 17..6372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:23 Download gff for
BS30903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1322574..1322714 | 17..157 | 100 | -> | Plus |
| X | 1322773..1324809 | 158..2194 | 99 | -> | Plus |
| X | 1324868..1324997 | 2195..2324 | 100 | -> | Plus |
| X | 1325055..1325185 | 2325..2455 | 100 | -> | Plus |
| X | 1325244..1327014 | 2456..4226 | 99 | -> | Plus |
| X | 1327069..1327277 | 4227..4435 | 100 | -> | Plus |
| X | 1327338..1329274 | 4436..6372 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:42 Download gff for
BS30903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1216607..1216747 | 17..157 | 100 | -> | Plus |
| arm_X | 1216806..1218842 | 158..2194 | 99 | -> | Plus |
| arm_X | 1218901..1219030 | 2195..2324 | 100 | -> | Plus |
| arm_X | 1219088..1219218 | 2325..2455 | 100 | -> | Plus |
| arm_X | 1219277..1221047 | 2456..4226 | 99 | -> | Plus |
| arm_X | 1221102..1221310 | 4227..4435 | 100 | -> | Plus |
| arm_X | 1221371..1223307 | 4436..6372 | 100 | | Plus |
BS30903.pep Sequence
Translation from 16 to 6372
> BS30903.pep
MLIWHLLLWPALIASAPPRPLTDQKAEVAKLRSELEKALEHDDGGAPPGV
VVAPTWTQQAGQMPLGKTSKVVVDHSSLSSASAIRQEIQQAVAHQGQNQE
VLQLEALLKARGSSKESTAQVSTSRQEVLGATVQEANVVESHSTSQTVDL
EQLQRLELSKRRTRDMLVLGRIEELLNYSMPTDVDRWLTLQANGSVFLVG
QQQEGLLVLSEEFTPLQSYVHPFPITAMLGTDRWNRRVHMQEGLLVMASQ
DQLIWLRLEPSLGLKPIWHWTIGSHVTKIRAFNMEGQDYLALVANHTLNI
YVYDLEAEEFWIAQRVQMAETISNLAILDTGRELLLAVGQWDEVLIYACT
SKGQPLHLRQQVAAPEVAGVTAFQMGGRSYLALGGIMPQILVYVQGQLVP
RTILGQNFGFVDHYLPIPVRSYRDDLLLLVQHRVVFDTHSLLVLEVLVWN
GEAFEAGLPPPCGTAYGAGCMLDQDREAGISGAVLLRRSTNQPPLVVVPR
KEAPTGIFVLETQLLARNSETQDLLEIRQFMQDWVHEQEELIQLAEELLA
EKSESQYIEELSTPLVVSEGGTVEELFVNEARWTGADAVVDVSSLLQQIL
LLDGEMSSRRSKRQPETLFNFHYEQLEVEAVDSVELNLEKLNHETFYIRN
GSLDLHLGTLNVQQLELLEAPKLELVPVHGAESYKILKMATDLDSIFINE
MEWDKLLQDLVWRHQPLKLSQLHVEGPVIFEDVLSLHSLNDLSFPGDYLW
SQGNETSVVQAPKEFTQTLSANAVDTTGTINAVYPHDVITLSDSQEWPGL
VTFSHLEVSEELELNGSAQGRQFEEAPLNPTLLESRVISADCHFEQLLVR
GPLRLLGKVDNDSFGSLLGDLVQRSPNSAQELQISGQKRVDQLLLPVDAH
IADNQLSGIFLNDFVTKHTPQTLSNLSQLGGYVYFHQLELGKESSYDGVR
LEELLSKSLRLDSPFPLSSPHTRLRFVGHAPNFTRLQVENTLNKVPLSSG
YQLLHEPLHLGRANFSRLMAGQAQVNYDVSGNGLLNGRSLIRILQEQPRT
WSGEVHVQELILPQGVQANQLQGIKADLLLDFLQQLDELPLLILQGRIQV
ERIAVNGSVQAAETLNMQPFHELQRQVVWLDRQNELGTRWVLKESPQFQQ
NLQVLGSFNERLLPELLDDIVLRSDAHEVLIEGTKSFLAPVNTKELHLAA
LNGIPFNHMANKLSPLHLTGNVRIQGRIFVEDLQLNGQVNGDPDIPADLQ
KLLRWDPNAGGFVHRGVVELPKKELERLVVLGHLKNRSREPVQELFDQLV
FKQQRGIHLHGHKTFTGRLRIEDGAHIKFFNGRNLEQFLENLIYVDSQGE
IRLETPVRFAADVKMDHLEADRLVLSGELLNGCNVSQWLRDTIRVDRDFQ
QPEIAFAKGSLDGNFLEVEELNEVNLSLVVTRFTEQQLSDPLEADDLLLD
GQLVVRGTVNGYNLPEEYANTLMINPLREQQVDTPLLLSNIFVTGPLEVT
APVHGLNISDVAILGEDPVLLQSPLYFDTLHAPFLRAQQNINGFDFRAWY
GGSLWARGREQQEISGNWRVKKLQVKQGDELRPRRQTAEESYREFCEGLV
RILLPYKVQKLRRRFDLNQERDQENIRRVFALEAPGGISYLLINERGCWT
RIHRWNGSLFDRSGAFKSGPVDEAVALRVGNTSSNQDFAFMTSYELQDDQ
NEPSLNCSAVKPILLSWNLNKTKSTTEHMELSADTLRNLKDQYEQLKNQP
LPNPSYQQAFKYLQRPSIKSQLGSQWQENKHELSPSEMARMRRRLLDTLE
FRLQAEVNITQLSIPESDLFDEHLVEDFLELMRQLRTLRRRLDTETLPLP
NTPARVLAARSAQLIWPTLQELREVSSGNDSSFQEQVLEQTLLDVLMLAN
EENGSGDDEKLHAVIQRLRNLKGELQGQEEDDEGPAASYSDRNEQRLPLP
EVDWRPIQTLRLAVGPANRPRLLYARLTVVTPTDGPPPTTPSTAPAAHIQ
LHHANGSLFQTLAGEHGARHLTSLRVRDETLLAFMEGCCRIRVLIYRGVQ
GFVDFVRFPAPAQEAKSGDGEVLQLLSLRLPLNRPPGAMYLLAVVQARRV
TFYEVVVAGLLEPWLQCP*
BS30903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)N-PA | 2118 | CG11411-PA | 1..2118 | 1..2118 | 10879 | 100 | Plus |
