BS30904.complete Sequence
2873 bp assembled on 2012-07-30
GenBank Submission: KX802003
> BS30904.complete
GAAGTTATCAGTCGACATGCGATTTGCCTTCGATTCTAATCATTCGCAAT
CGGGGGCGCCATTCAAAGGCAGCAGGTGTTTCTTTAATTGTCAATGCATC
TGCTGTCGCCAAGGATGCTGCGTTGTGGTTGTAAAGTGCTGTTGCTGCTT
TAACTTAAACTGCTGCAACAGCCTTGGCTCCCGGAAGTCATTTCCACAAC
CCGCTGCAATGCGTAAAAAAGTTGCTGACCTCGAAGTCCTTAGAGTATCA
AGGTTTGTGGCGGTTATTTTAGTGCTGGCTCGGTGGGTTACTGCGGTAGC
GACACTCCTGACAAGCTGCATACTCCTAGACATATTTTCCGTGCCTGGCC
AGTCTGGAGTTGCAGATAGAAGCCAAGCCAGCAGTAGGACAGTGCACGTC
TCGGTTCCTACCACACCTAATGAAACTCCCAGTAGCACTTCGGAGACGAA
GCTAAAGTTGCTTTATGGGTATACATCGTATGACATAAATAACGACCAAC
AGGTAAAGTCCAACAATTTATGTAGAGTGCTTTGTAAAAGTCGCAATCGT
AAACGACAGCGAAGGAGGCGACGCCGACGCAATCACAGACGACGCAGGCA
CAGATATACTAAGCGACTTCATCATCTAATGCAAGATAATATGAGCGGCT
TTGAGCAAAGACTTAATTTTAGCGATGCCAAATGCCAGTCTTTGGAGACA
AATTACGGAACTAATTATGACTTAGTACAAGGAGGTAAACTATTTAGTCA
GTCAGAGAGAAGCCTACTGGTGTCCCCTTTGAGGGAAATTGAAGCACCTT
GGCCAGCGATTCATGGTTCAATGCGTAACTGTTCAAAGATTAAACGCAAT
AGAGCCAATCTTATTTGGCTTCTAATTGGACTCGTCTGGTTTGAAGTCAA
ACTTATAAATTGCAATGGGATCAGCAGTAGTAATTATTATGCTTCGAATT
TGGAGAGTCACAAGGGCTGCACCTTGTGCCATGAAAGCGGAAAGCCCAAC
ATATACACCGATAAAGATAATCCACACACAGACTACAACATCTACAACAA
ATACCATTCCAACAATAATTTCAACAAAAAAACTAATCAACCCCATAACA
ACATTGCACCCAGCGATGAAGTTCGTTTGGAGTCAATAAAACGGCAAATT
TTGACAAAGCTTGGTCTTAGCCACAAGCCTAATGTATCTCATCCTTTACC
AAAGCAATTTATTTGGGAAACAATATATCGAGTCGATGGTGGACGAATGA
TACCAAACAATGCATTTGGGAGCAGTGGTAAGAATTTAGATCAGAAGACT
ATCAAGCTGAGGGCGTTTGCCTCGCCCGGATCACATTTGTTTAATGGCCG
AGGTGGAAGGACCGATCAGAGAAGCGAACGGGATCCCAGTCATCATAAAT
ATCGATCCCCGTTCGATTTCACTTTCAATATAAGTAAAAATAATGTATAT
GGGAAAGTATTGAGAAATCGTTCTTTAGAACGAATCGATAAAAAAAACTC
ATTCTTAAACGGATGGACAGAAAACCGTCAATTAAAAATAAACTCTCAAA
TTGCATCTATGCCTATAGAACTAAAGAGCCACCATAACAGTAGTCCTAAG
GAGCTTAAAAGCGGAGCGGTCAGAAAAGTTAATGGCATCAACGGCACACA
AATGAATGAGAATGCCTTAAAAAAATCTACATATCCTATAGATATAAATC
ATAGTATTGATAATAAAACCCATACTGGCAAAAATGGTGAGATGAGCCAC
AATGATTATGAATATTTTAACGATTACAGTGTTCAGACTCATGATAAAAA
CCGGTACCATGAAGGTCGCTCTAGCATTGGATATCAGCCAGCGATCCACA
ACATAGAATATGAAAATCAGAAAGGACATCACGAATCTTTTGCTGATGAT
CATGAAAATATTGATCATGAAGACTTCTTTGGAAATACGCAGGAAATAAT
TACATTTGCTGAAGAGGGAACCCAATATCGACAATATCGAATACTCGAGT
TTTCGGCCCAAAACCGCCGTGTTCCCAGCCAAAAATTATCCATACGAAGC
GCTCAGATTCATATAAGGATAGACAAGCCACATAGTCTTTGGATTGAAAA
AGCAAAAAGTTTGCCAGAAAAACATTTACTAAACACTAAACGAAAATGGG
GAGCAAATAAACCACATCACAGAATAAAAATATGGGTATTTCAGTTATCA
ACTTCAATCAATATTACGGAGAAGGGAATAGATAAGGCTATTATCTTCCG
AGCTTCTTTTCAAGTTGACCCGAAAAATTTAGGATGGCAAAAATTCGATT
TAACCGATACAATCCGTGAATGGTACGGCCATACCAGTCACGAAAAACTG
CGTTTGTTGATTGATTGTACTGGATGCGGTGGTCGTTACTCTTTGCACCT
CTTTCAAACTTCGAAACTGAGAGGAAACTCATCCGACTACTTGAGTACGA
ATCCCAATCGACCATTTCTCGTACTTCATACAGAATCATCCAGAACAAGG
CGTGTTAGGCGACGCGCCGTAGATTGTGGCGGAGCTTTAAATGGACAGTG
CTGTAAAGAATCTTTTTATGTTTCTTTCAAAGCACTAGGTTGGGATGACT
GGATTATTGCACCCAGAGGATATTTTGCAAACTATTGCCGAGGCGATTGC
ACGGGCTCTTTTAGGACGCCAGACACTTTCCAAACATTTCATGCTCATTT
TATAGAGGAGTATCGGAAAATGGGACTTATGAATGGAATGCGACCGTGTT
GCGCCCCAATAAAATTCTCTAGTATGTCCTTAATATATTATGGTGATGAT
GGTATTATTAAACGAGACTTGCCAAAAATGGTTGTTGATGAGTGTGGTTG
CCCTTAGAAGCTTTCTAGACCAT
BS30904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actbeta-RA | 2841 | CG11062-PA | 1..2841 | 17..2857 | 14205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actbeta-RA | 3671 | CG11062-RA | 331..3171 | 17..2857 | 14205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1082127..1083126 | 1016..17 | 5000 | 100 | Minus |
| 4 | 1348131 | 4 | 1080256..1081209 | 1968..1015 | 4770 | 100 | Minus |
| 4 | 1348131 | 4 | 1077887..1078521 | 2857..2223 | 3175 | 100 | Minus |
| 4 | 1348131 | 4 | 1078572..1078830 | 2225..1967 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:58:35 has no hits.
BS30904.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:22 Download gff for
BS30904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actbeta-RA | 327..3167 | 17..2857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:20 Download gff for
BS30904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actbeta-RA | 331..3171 | 17..2857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:43 Download gff for
BS30904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actbeta-RA | 331..3171 | 17..2857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:43 Download gff for
BS30904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1077887..1078519 | 2225..2857 | 100 | <- | Minus |
| 4 | 1078573..1078829 | 1968..2224 | 100 | <- | Minus |
| 4 | 1080257..1081207 | 1017..1967 | 100 | <- | Minus |
| 4 | 1082127..1083126 | 17..1016 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:20 Download gff for
BS30904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1098513..1099145 | 2225..2857 | 100 | <- | Minus |
| arm_4 | 1099199..1099455 | 1968..2224 | 100 | <- | Minus |
| arm_4 | 1100883..1101833 | 1017..1967 | 100 | <- | Minus |
| arm_4 | 1102753..1103752 | 17..1016 | 100 | | Minus |
BS30904.pep Sequence
Translation from 16 to 2856
> BS30904.pep
MRFAFDSNHSQSGAPFKGSRCFFNCQCICCRQGCCVVVVKCCCCFNLNCC
NSLGSRKSFPQPAAMRKKVADLEVLRVSRFVAVILVLARWVTAVATLLTS
CILLDIFSVPGQSGVADRSQASSRTVHVSVPTTPNETPSSTSETKLKLLY
GYTSYDINNDQQVKSNNLCRVLCKSRNRKRQRRRRRRRNHRRRRHRYTKR
LHHLMQDNMSGFEQRLNFSDAKCQSLETNYGTNYDLVQGGKLFSQSERSL
LVSPLREIEAPWPAIHGSMRNCSKIKRNRANLIWLLIGLVWFEVKLINCN
GISSSNYYASNLESHKGCTLCHESGKPNIYTDKDNPHTDYNIYNKYHSNN
NFNKKTNQPHNNIAPSDEVRLESIKRQILTKLGLSHKPNVSHPLPKQFIW
ETIYRVDGGRMIPNNAFGSSGKNLDQKTIKLRAFASPGSHLFNGRGGRTD
QRSERDPSHHKYRSPFDFTFNISKNNVYGKVLRNRSLERIDKKNSFLNGW
TENRQLKINSQIASMPIELKSHHNSSPKELKSGAVRKVNGINGTQMNENA
LKKSTYPIDINHSIDNKTHTGKNGEMSHNDYEYFNDYSVQTHDKNRYHEG
RSSIGYQPAIHNIEYENQKGHHESFADDHENIDHEDFFGNTQEIITFAEE
GTQYRQYRILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLP
EKHLLNTKRKWGANKPHHRIKIWVFQLSTSINITEKGIDKAIIFRASFQV
DPKNLGWQKFDLTDTIREWYGHTSHEKLRLLIDCTGCGGRYSLHLFQTSK
LRGNSSDYLSTNPNRPFLVLHTESSRTRRVRRRAVDCGGALNGQCCKESF
YVSFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQTFHAHFIEEYR
KMGLMNGMRPCCAPIKFSSMSLIYYGDDGIIKRDLPKMVVDECGCP*
BS30904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actbeta-PA | 946 | CG11062-PA | 1..946 | 1..946 | 5121 | 100 | Plus |
| daw-PC | 586 | CG16987-PC | 409..585 | 757..945 | 252 | 29.5 | Plus |
| daw-PA | 586 | CG16987-PA | 409..585 | 757..945 | 252 | 29.5 | Plus |
| daw-PB | 586 | CG16987-PB | 409..585 | 757..945 | 252 | 29.5 | Plus |
| dpp-PA | 588 | CG9885-PA | 487..587 | 845..945 | 182 | 35.2 | Plus |
