BS30905.complete Sequence
542 bp assembled on 2012-07-12
GenBank Submission: KX806378
> BS30905.complete
GAAGTTATCAGTCGACATGGCTCCACGCAACAAGGAACAGGAACAGGAAG
TGCTCAACTGGGTGTTCGCCGTGATTGGCGAGAAGGTCCCCAGCGGGCAG
TACGAGGACATTCTCAAGGACGGCATCTGGCTGTGCAAGCTGGCCAACAA
ACTGGCCCCCGGATCGGTGAAGAAGATCCAGGAGCGCGGCACCAACTTCC
AACTGATGGAGAACATCCAGCGTTTCCAGGCAGCGGTCAAGAAGTACGGT
GTGCCCGAGGAGGAGATCTTCCAAACCGCCGATCTTTTCGAGCGTCGCAA
CATCCCCCAGGTCACCCTCTCCCTGTACGCCCTTGGACGCATCACGCAAA
AGCACCCCGAGTACACTGGCCCCACACTGGGACCCAAGATGGCCGACAAG
AACGAGCGCAGCTTCACCGAAGAGCAGCTCCGTGCCCACGAGGGTGAGCT
CAACCTGCAGATGGGCTTCAACAAGGGCGCCTCGCAGGCTGGACACGGTG
GTATGGGCAACACCCGCCACATGTAAAAGCTTTCTAGACCAT
BS30905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5023-RA | 510 | CG5023-PA | 1..510 | 17..526 | 2535 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5023-RA | 789 | CG5023-RA | 81..590 | 17..526 | 2535 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20174091..20174411 | 23..343 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 20174491..20174673 | 344..526 | 900 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:42:14 has no hits.
BS30905.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-12 11:17:57 Download gff for
BS30905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 80..587 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:21 Download gff for
BS30905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 81..588 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:38 Download gff for
BS30905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 81..588 | 17..524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:38 Download gff for
BS30905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20174087..20174411 | 17..343 | 98 | -> | Plus |
| 3R | 20174491..20174671 | 344..524 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:21 Download gff for
BS30905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15999809..16000133 | 17..343 | 98 | -> | Plus |
| arm_3R | 16000213..16000393 | 344..524 | 99 | | Plus |
BS30905.pep Sequence
Translation from 16 to 525
> BS30905.pep
MAPRNKEQEQEVLNWVFAVIGEKVPSGQYEDILKDGIWLCKLANKLAPGS
VKKIQERGTNFQLMENIQRFQAAVKKYGVPEEEIFQTADLFERRNIPQVT
LSLYALGRITQKHPEYTGPTLGPKMADKNERSFTEEQLRAHEGELNLQMG
FNKGASQAGHGGMGNTRHM*
BS30905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5023-PA | 169 | CG5023-PA | 1..169 | 1..169 | 887 | 100 | Plus |
| Mp20-PA | 184 | CG4696-PA | 15..171 | 4..159 | 441 | 53.5 | Plus |
| Mp20-PC | 189 | CG4696-PC | 15..171 | 4..159 | 441 | 53.5 | Plus |
| Chd64-PC | 175 | CG14996-PC | 11..175 | 5..169 | 379 | 47.9 | Plus |
| Chd64-PB | 188 | CG14996-PB | 24..188 | 5..169 | 379 | 47.9 | Plus |
