BS30909.complete Sequence
845 bp assembled on 2012-07-12
GenBank Submission: KX804514
> BS30909.complete
GAAGTTATCAGACGACATGAGCATACCCAACGAGTACATAGCGAAAACGG
AGGATGTGGCGGAACAGGTCATCAAGCGCGGCAAAAATGTGCTGCCCACA
GTGGCCCGTTTGTGCCTCATCGCCACGTTCTTCGAGGACGGCCTGCGCAT
GTACATCCAATGGAACGAGCAGCGGGAGTACATGGACATGAGCTGGGGCT
GCGGCAAGTTCCTGGCCACCGTCTTTGTGCTCGTCAACCTGTTGGGCCAA
CTGGGCGGCTGCGGCATGGTGATGGCCAGATTTAAGGTCGACATAGCGGT
GGGACTGCTTTTCTTCATTGTGGTGTTGCAGACCGTTGCCTACTCCATTC
TGTGGGACTTCCAGTTCTTACTGCGAAACTTTGCACTCATCGGAGCCCTA
CTGCTCGTCCTGGCGGAAGCCAGGATAGAGGGGCGCAGCCTGTTTGCCGG
CGTGCCATCGATGGGCGAAAACAAGCCCAAGAACTTCATGCAGCTGGCGG
GCCGCATCCTGCTGGCCTTCATGTTCATCACTTTGATCCGCTTTGAGCTG
AGCGTATGGCAAGTTATACAGGACATCATCGGCTCCATTCTGATGGTGCT
GGTCGTGCTGGGATACAAGACGAAGCTGTCCGCCCTGATTCTGGTGGCTC
TGCTTACGATCCTGAACCTGTACCACAATGCCTGGTGGACCATTCCGTCC
TACAAGCCACTCAGGGATTTCTTGAAATACGACTTTTTCCAGACTCTCTC
GGTGATCGGTGGCCTCCTCATGATCGTGTCCTTGGGCCCTGGCGGCGTTT
CCATGGACGAGCACAAGAAGAAGTGGTAGAAGCTTTCTAGACCAT
BS30909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Surf4-RA | 813 | CG6202-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Surf4-RA | 1641 | CG6202-RA | 216..1031 | 15..830 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15344413..15344829 | 742..326 | 2085 | 100 | Minus |
3R | 32079331 | 3R | 15344889..15345155 | 331..65 | 1335 | 100 | Minus |
3R | 32079331 | 3R | 15344263..15344353 | 830..740 | 455 | 100 | Minus |
3R | 32079331 | 3R | 15345907..15345961 | 69..15 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:42:24 has no hits.
BS30909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-12 11:17:59 Download gff for
BS30909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Surf4-RB | 143..955 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:25 Download gff for
BS30909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Surf4-RA | 218..1030 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:42 Download gff for
BS30909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Surf4-RA | 218..1030 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:42 Download gff for
BS30909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15344889..15345152 | 68..331 | 100 | <- | Minus |
3R | 15345909..15345959 | 17..67 | 100 | | Minus |
3R | 15344264..15344350 | 743..829 | 100 | <- | Minus |
3R | 15344413..15344823 | 332..742 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:25 Download gff for
BS30909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11169986..11170072 | 743..829 | 100 | <- | Minus |
arm_3R | 11170135..11170545 | 332..742 | 100 | <- | Minus |
arm_3R | 11170611..11170874 | 68..331 | 100 | <- | Minus |
arm_3R | 11171631..11171681 | 17..67 | 100 | | Minus |
BS30909.pep Sequence
Translation from 16 to 828
> BS30909.pep
MSIPNEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWN
EQREYMDMSWGCGKFLATVFVLVNLLGQLGGCGMVMARFKVDIAVGLLFF
IVVLQTVAYSILWDFQFLLRNFALIGALLLVLAEARIEGRSLFAGVPSMG
ENKPKNFMQLAGRILLAFMFITLIRFELSVWQVIQDIIGSILMVLVVLGY
KTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQTLSVIGGL
LMIVSLGPGGVSMDEHKKKW*
BS30909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Surf4-PA | 270 | CG6202-PA | 1..270 | 1..270 | 1379 | 100 | Plus |