Clone BS30909 Report

Search the DGRC for BS30909

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:309
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptSurf4-RA
Protein status:BS30909.pep: full length peptide match
Sequenced Size:845

Clone Sequence Records

BS30909.complete Sequence

845 bp assembled on 2012-07-12

GenBank Submission: KX804514

> BS30909.complete
GAAGTTATCAGACGACATGAGCATACCCAACGAGTACATAGCGAAAACGG
AGGATGTGGCGGAACAGGTCATCAAGCGCGGCAAAAATGTGCTGCCCACA
GTGGCCCGTTTGTGCCTCATCGCCACGTTCTTCGAGGACGGCCTGCGCAT
GTACATCCAATGGAACGAGCAGCGGGAGTACATGGACATGAGCTGGGGCT
GCGGCAAGTTCCTGGCCACCGTCTTTGTGCTCGTCAACCTGTTGGGCCAA
CTGGGCGGCTGCGGCATGGTGATGGCCAGATTTAAGGTCGACATAGCGGT
GGGACTGCTTTTCTTCATTGTGGTGTTGCAGACCGTTGCCTACTCCATTC
TGTGGGACTTCCAGTTCTTACTGCGAAACTTTGCACTCATCGGAGCCCTA
CTGCTCGTCCTGGCGGAAGCCAGGATAGAGGGGCGCAGCCTGTTTGCCGG
CGTGCCATCGATGGGCGAAAACAAGCCCAAGAACTTCATGCAGCTGGCGG
GCCGCATCCTGCTGGCCTTCATGTTCATCACTTTGATCCGCTTTGAGCTG
AGCGTATGGCAAGTTATACAGGACATCATCGGCTCCATTCTGATGGTGCT
GGTCGTGCTGGGATACAAGACGAAGCTGTCCGCCCTGATTCTGGTGGCTC
TGCTTACGATCCTGAACCTGTACCACAATGCCTGGTGGACCATTCCGTCC
TACAAGCCACTCAGGGATTTCTTGAAATACGACTTTTTCCAGACTCTCTC
GGTGATCGGTGGCCTCCTCATGATCGTGTCCTTGGGCCCTGGCGGCGTTT
CCATGGACGAGCACAAGAAGAAGTGGTAGAAGCTTTCTAGACCAT

BS30909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Surf4-RA 813 CG6202-PA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Surf4-RA 1641 CG6202-RA 216..1031 15..830 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15344413..15344829 742..326 2085 100 Minus
3R 32079331 3R 15344889..15345155 331..65 1335 100 Minus
3R 32079331 3R 15344263..15344353 830..740 455 100 Minus
3R 32079331 3R 15345907..15345961 69..15 275 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:42:24 has no hits.

BS30909.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-12 11:17:59 Download gff for BS30909.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RB 143..955 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:25 Download gff for BS30909.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 218..1030 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:42 Download gff for BS30909.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 218..1030 17..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:42 Download gff for BS30909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15344889..15345152 68..331 100 <- Minus
3R 15345909..15345959 17..67 100   Minus
3R 15344264..15344350 743..829 100 <- Minus
3R 15344413..15344823 332..742 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:25 Download gff for BS30909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11169986..11170072 743..829 100 <- Minus
arm_3R 11170135..11170545 332..742 100 <- Minus
arm_3R 11170611..11170874 68..331 100 <- Minus
arm_3R 11171631..11171681 17..67 100   Minus

BS30909.pep Sequence

Translation from 16 to 828

> BS30909.pep
MSIPNEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWN
EQREYMDMSWGCGKFLATVFVLVNLLGQLGGCGMVMARFKVDIAVGLLFF
IVVLQTVAYSILWDFQFLLRNFALIGALLLVLAEARIEGRSLFAGVPSMG
ENKPKNFMQLAGRILLAFMFITLIRFELSVWQVIQDIIGSILMVLVVLGY
KTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQTLSVIGGL
LMIVSLGPGGVSMDEHKKKW*

BS30909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Surf4-PA 270 CG6202-PA 1..270 1..270 1379 100 Plus