BS30916.complete Sequence
3395 bp assembled on 2012-09-11
GenBank Submission: KX805617
> BS30916.complete
GAAGTTATCAGTCGACATGGAGTTGCCACCAGCAGCAGCAGCAGCAACAA
CAACAAATGCGTCGGCATCCTTGCAACGTGTCGCCTCGGAATCCAGTCTT
GGTCGGGAGCGGGATCGGGAGCAAGCAGCTGCTCCACCTGGCCAACTGAT
GGGTCATCACTATCATTACATCCAATATCCGGCGCATTTCCAGCCGCAAC
AACTTCAGGAGCAGCCACCCCAGCCCCAACTGCCCTGCCAGTGTCCCTGC
TCCTGCGGCCGTGCACCTCCACCGCCCATGCAGCCCACTAATCCCGGCCA
GAATGCTTCAATGGCCGTGGCTGTGCTGGTCCACCAACAGACGCCCAGTC
AGCAGGAGCCGGCAAGGAGTTCGCCGCTCAAAGCACAGTCCGCTCAGTCC
CTGCTCAATCACTCTTATCAGGCGCTGCACGAGGACCAGCATCAGCAGCA
GGAGCAACTCCAGCTGGACTCCTCAGCCGGAGCCGGCAGTTGCGACTGCG
ATCTGGAGTGCACCTGCCCCGCCACTGGAGGAAACTCCTCCCTGGCCCAG
CACAAGAGGAGCCTGCTGGCGGACGCCATGCTGGGAGCAGACGAGATTAC
GGTCAGCGAGTCCGACAACAACAGCACTATGATTAAAAAGAAGAAGCCCC
GATCCGGCGGAGGAGCAGGACAACTACCGCCGAAGACACAGCCCACGAGC
GACAGCTGCAATGACATCTACCATGATACGGAGCTGGACGGAGCAGCAGG
AGCTGGGACAGTTGGATCTCCTGGCTCCGGGATCAAGTCACAGATTCTGG
ACGATAATCATCGCCCTCCTCTGCCGCCACGCCCACCGCCCAGACCCAGG
AGTAATGCCAATGGCTCCATAGCCCATCGCCATGGCGCGGGGATCAAGAA
GTACGTGGTCTGGTGCCTCATCTGCGGTGGATTCAGCTGCTTGCTGGGCG
TGCTCTTCTTGGGCGTCTACTTCCTGCTCCATTCGTACACCATCACGGTG
GGCAACTTCGAAACGGTGCCCACCTTTGTGCCCGCCACCCTGCTCATCCT
CACAGGAATCTGCATCATGAGCCTGGCCAGGCGTCGGAATCGCTATAGCT
ACCTGATAAAGCTGTCCGGAGCCTGTGGCCTGGTGTCCGCCTTAACCTGT
GCTCTGGTCACAGTGACCACCACTGTGCTCCACATGAGTCGCCTGCAGGC
CTTGAGGGAATGCGAGTATGCTCAAAAGACGCGCACGTGCACCTGCTACT
CGGACCTCATCGAATCCCAGGTGGACCGAGTGGATAAGGAAGGAGTGCGC
CTTGTGTTCGACTCCCTCTCGGACTGCGGCGTTGTCCATGGATCCCTCTA
TTCCTGCCTGAGAGCTATCTTCGGCCTGTCCGTGGCCGGAGTGCTCATCG
CCGTCTTCAGCTGCATGTTGGTGTACCAGCTACTCAGTCACGAACGCAAG
AAGATGTACTGGGAGCAGCTGGAGCTGCGATGCAGATCCCTGTACGCCAG
CCAGGCTCCTCCTCCGGCCTTGGGTCCAGGCAGGATGTTAAACTGCAGGT
GCTGCGAGCAGTGCCACGCCCACAGGCAGTTGACACTGCCTTTGCAGGCC
ACCGCTTATCCGTGGGACGAGGCCACGGTGGCCGCTGCAGCAGCAGCCGC
AGGAGGAGGAGGCGGAGAGCAGCGGTTCTGGGCCGCCCAGCCGCCGGGTA
ACTTCTACTCGCCGAATCCAGGCGGCGATGATCCGGTGGGCACTTGCAGG
AGTGGAGAACGGGCAGGAGGAGCAGGACGCAGTAGCAGCGGATGGAGCTG
GCCTCGGATGCCCTGGCAACGTACCACTCCTGACGCCGGTCGTCGATTTC
GCCAAGCTGCTGCCAGTCCGGATTCACAGTACGGATTTAGTTCGTCCACG
GCGGTCCAGGGAGATGGTAACCAGATGCTGATCGAGGAACCCGTGGTGGC
GGCCTACAGTGGAATGCCCCCGCCAAATGCCCTGCCCTACGGAGTTTGGG
GACCGCCGCCACCCTACAGCGATCCCAACAGTCCGGCCAGACGTGGCTAC
TACCAGTATCTGCAGCCCACTGCGTGTCTGGTTGGGAATCAGGGCACTGT
CGCCGTCACTCTGACCCAGGAGCAAATGCATCCGACCCTGCAACATACGC
ATCCCCAACAGCAGCAGCAATTGCAGCAGATGCAGCTGCAGCGGCTCCAG
GTCCAGTCCGCCACCTTGGAGCGGATGGATGGGCTCAGCAGTGCCGGTAA
CGTGAGTACCCTAGTGGCTGCCACTCGCTCCTCCGCCTACAAATCAAAGG
CCGAGTACGAGAACACGCCGTCTGACAGTGATGGTGGCAATCCCCGGGAG
AGGGAACGCTGCTCCAACACGCTGCCCACGCGAAAGCTGAAGAAGCGCTT
GGAGGCGGGCACCGGGGCCAAGAGCATCGGTCCGCAGAGTAATCCTGGCC
AGCAGCGACCCAATGTCCAGCAGTTGTTCGCCAAGCAGGACCAACAGCAG
CCCACCGGCCAGGCTAATCCCCAGCAGGCTCAGCCCCAGACGGCCGGGGT
GGAGAACAGTGGCTACCAGGACTCGAACGGAGCCATAGCCAAGGACCAGG
CGGTGGGAACGGATCCGGCCGAGTCCGAGGTGTACTTCGCCGACGTGAGT
AGTTGCTGCAACATGTCTGTGAAGAATGACAGCTACTATGACAACGCCCA
GCGCCACCAGGGGCACCACCATCATCACCAGCATCAGCACAGTAATTGCA
GCCACAGCAGCGGGCAGAGCAACGCCAACGAGGACTACCTGGCCCAGCGC
TTCGGTCGCGGCAGGGAGCACTCCGTTCGGAGTCGTCTGCCCATTCCGCA
AACGAGGCGAGAGGACGACTACGAGAGCTCCAACCTGAACATGCCCACGC
TGAAGGAGCAGCAGCAGCAGGCGCAACAGCTGCAGAAGGAGATCTCCCGC
CAGAGCATGTGCTCCGTGGAGTCGGAGGCCAAGACCGAGTTCACCGACCT
CTCGCCCTCCACGCCCTGCGGTGGCAATCTGCCGTTGCCGCCGCCAGCGA
ATTTCGCCAGTGATCCGCCGACGGGTCAACAGTCGCCCAGCTTCGTGGCC
TCGTTCCCCTACTCCTCGGAGTCGCAGTGCCTGGAGGCGCATCGTCGCTC
CACAAAGAACATCCACGAGCTGATGATCTCCGGGGTGGGGGGATCCTCGA
CCGGCGGCGGCGACTCCCACTACGAGGTTATCAACGACCGGGGCAATCCC
TACCAGCTGCAGCGATCGCAGCAGGCCAAGCACAAGGCCAAGTCCAAGAC
GCGGTCGCGGGAGCAGTTGGACATCTACGGCAGCGGAGCTGAGCGATCCG
ACTGGTCCTCGGATGGGGGTCGCTTGTGAAAGCTTTCTAGACCAT
BS30916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13921-RB | 3363 | CG13921-PB | 1..3363 | 17..3379 | 16815 | 100 | Plus |
| CG13921-RD | 3360 | CG13921-PD | 1..3360 | 17..3379 | 16735 | 99.9 | Plus |
| CG13921-RC | 2622 | CG13921-PC | 115..2622 | 872..3379 | 12540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13921-RB | 4273 | CG13921-RB | 326..3690 | 15..3379 | 16825 | 100 | Plus |
| CG13921-RD | 4270 | CG13921-RD | 326..3687 | 15..3379 | 16745 | 99.9 | Plus |
| CG13921-RC | 3372 | CG13921-RC | 282..2789 | 872..3379 | 12540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1749717..1751807 | 1289..3379 | 10455 | 100 | Plus |
| 3L | 28110227 | 3L | 1747232..1748089 | 15..872 | 4290 | 100 | Plus |
| 3L | 28110227 | 3L | 1749176..1749410 | 871..1105 | 1175 | 100 | Plus |
| 3L | 28110227 | 3L | 1749470..1749654 | 1105..1289 | 925 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 2699..2788 | 173 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6856 | 2117..2206 | 171 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6823 | 2117..2206 | 146 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2395 | 2117..2199 | 145 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2852 | 2116..2200 | 145 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6870 | 2117..2199 | 145 | 63.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1122 | 2137..2199 | 144 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6956 | 2699..2809 | 142 | 61.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1148 | 2111..2192 | 140 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2382 | 2140..2214 | 137 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2403..2442 | 27..66 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6838 | 2117..2200 | 134 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2861 | 2117..2200 | 134 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6774 | 2142..2199 | 133 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2379 | 2138..2192 | 131 | 70.9 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 630..722 | 2226..2138 | 131 | 64.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2535 | 2117..2192 | 130 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6795 | 2138..2199 | 130 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2442 | 2117..2192 | 128 | 63.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7931..7996 | 2124..2191 | 128 | 67.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9375..9440 | 2124..2191 | 128 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2407 | 2117..2199 | 127 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2390 | 2138..2200 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6889 | 2117..2200 | 122 | 62.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1164 | 2117..2196 | 121 | 61.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1011 | 2151..2192 | 120 | 76.2 | Plus |
BS30916.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-11 10:39:57 Download gff for
BS30916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13921-RB | 325..3686 | 17..3378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:30 Download gff for
BS30916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13921-RB | 328..3689 | 17..3378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:35 Download gff for
BS30916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13921-RB | 328..3689 | 17..3378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:35 Download gff for
BS30916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1747234..1748089 | 17..872 | 100 | -> | Plus |
| 3L | 1749178..1749410 | 873..1105 | 100 | -> | Plus |
| 3L | 1749471..1749654 | 1106..1289 | 100 | -> | Plus |
| 3L | 1749718..1751806 | 1290..3378 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:30 Download gff for
BS30916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1747234..1748089 | 17..872 | 100 | -> | Plus |
| arm_3L | 1749178..1749410 | 873..1105 | 100 | -> | Plus |
| arm_3L | 1749471..1749654 | 1106..1289 | 100 | -> | Plus |
| arm_3L | 1749718..1751806 | 1290..3378 | 100 | | Plus |
BS30916.pep Sequence
Translation from 16 to 3378
> BS30916.pep
MELPPAAAAATTTNASASLQRVASESSLGRERDREQAAAPPGQLMGHHYH
YIQYPAHFQPQQLQEQPPQPQLPCQCPCSCGRAPPPPMQPTNPGQNASMA
VAVLVHQQTPSQQEPARSSPLKAQSAQSLLNHSYQALHEDQHQQQEQLQL
DSSAGAGSCDCDLECTCPATGGNSSLAQHKRSLLADAMLGADEITVSESD
NNSTMIKKKKPRSGGGAGQLPPKTQPTSDSCNDIYHDTELDGAAGAGTVG
SPGSGIKSQILDDNHRPPLPPRPPPRPRSNANGSIAHRHGAGIKKYVVWC
LICGGFSCLLGVLFLGVYFLLHSYTITVGNFETVPTFVPATLLILTGICI
MSLARRRNRYSYLIKLSGACGLVSALTCALVTVTTTVLHMSRLQALRECE
YAQKTRTCTCYSDLIESQVDRVDKEGVRLVFDSLSDCGVVHGSLYSCLRA
IFGLSVAGVLIAVFSCMLVYQLLSHERKKMYWEQLELRCRSLYASQAPPP
ALGPGRMLNCRCCEQCHAHRQLTLPLQATAYPWDEATVAAAAAAAGGGGG
EQRFWAAQPPGNFYSPNPGGDDPVGTCRSGERAGGAGRSSSGWSWPRMPW
QRTTPDAGRRFRQAAASPDSQYGFSSSTAVQGDGNQMLIEEPVVAAYSGM
PPPNALPYGVWGPPPPYSDPNSPARRGYYQYLQPTACLVGNQGTVAVTLT
QEQMHPTLQHTHPQQQQQLQQMQLQRLQVQSATLERMDGLSSAGNVSTLV
AATRSSAYKSKAEYENTPSDSDGGNPRERERCSNTLPTRKLKKRLEAGTG
AKSIGPQSNPGQQRPNVQQLFAKQDQQQPTGQANPQQAQPQTAGVENSGY
QDSNGAIAKDQAVGTDPAESEVYFADVSSCCNMSVKNDSYYDNAQRHQGH
HHHHQHQHSNCSHSSGQSNANEDYLAQRFGRGREHSVRSRLPIPQTRRED
DYESSNLNMPTLKEQQQQAQQLQKEISRQSMCSVESEAKTEFTDLSPSTP
CGGNLPLPPPANFASDPPTGQQSPSFVASFPYSSESQCLEAHRRSTKNIH
ELMISGVGGSSTGGGDSHYEVINDRGNPYQLQRSQQAKHKAKSKTRSREQ
LDIYGSGAERSDWSSDGGRL*
BS30916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13921-PB | 1120 | CG13921-PB | 1..1120 | 1..1120 | 5974 | 100 | Plus |
| CG13921-PD | 1119 | CG13921-PD | 1..1119 | 1..1120 | 5957 | 99.9 | Plus |
| CG13921-PC | 873 | CG13921-PC | 22..873 | 271..1120 | 4458 | 98.6 | Plus |
| CG13921-PF | 872 | CG13921-PF | 22..872 | 271..1120 | 4441 | 98.5 | Plus |
| CG13921-PE | 872 | CG13921-PE | 22..872 | 271..1120 | 4441 | 98.5 | Plus |
