BS30924.complete Sequence
2048 bp assembled on 2012-10-02
GenBank Submission: KX805844
> BS30924.complete
GAAGTTATCAGTCGACATGATGTTCACACGTGCCCAGGTGCGCAAACAGA
AGACCAGCAATTCGAGCAGCCAGCGACCTCGGAGCTCGGGAGGATCGACC
CGCCATGAGACACGCTACAAACAGAGCTCCACCAGCAGTAGTGGAGCAGG
CAGTGGCTTAAGTGGCGCCAGTGGAGCCTCCGGCGCCCGAAGGGATCAGT
ACCGGGACAGGGATCACTATGGAAAGCATTCCTTTGAGCTGCCACGCCAG
CACTCCAAGGAGGAGGCCTATCATCGAGATCGGGAGAGCAGTGCGGGTGG
TGTCGACAGGGGCGAAAGGAGTGGCATTGGTGGCAATGGTGGTGGCGTCA
CCGGCGGTGGCGTCTACGTGGACAGAAGGACTCGCCCGAGGAGCATAACC
AATCGACGCGGGGCCATCAAGCATCAAAAAACCCACGACATCAATGGTCA
TCGTTTTGTGGCCAAATTCTTTCGCCAGCCCACCTTTTGTGCCTTCTGCA
ATTTGTTTCTCTGGGGATTTGGCAAACAGGGCTATCAGTGCATAATTTGC
CAAACGGTGGTGCACAAAAAGTGCCATGACAAGCTCCTGGGCAAATGTTC
CGGTTCCGTCTTCACCTCAGCCAGTACAATTTTACTACGCGAACGTTTCA
AGATCGATATGCCACATCGGTTTAAGCCACACACTTTTATGTCGCCGACT
TTTTGTGACCATTGCGGCTCATTAATGGGTGGATTTTTTATTCAGGGCCT
CAAATGCGAAGAATGTGACGTGAATTGTCACAAGAAATGCGAACGGCTCA
CGGCCAATTTATGCGGTGTCAATCAGAAACTCATCGTTGAGGCACTCAAC
CACGTGAAGCGAGGAGCCCGAGAAGCCCGTGACTCACCCAGCACTCCGCC
CAGTTTGAATCCAGCCTATAAAATCGAGGCCAGCGAAGAACACGATGAAA
CATCATATACATATTCACAATTCCAAAAATCCGGACGTTTCACTGCGCCA
GCAACAGTAATACCTAGATTTAAGAATTATTCGGTAGATGATTTCCACTT
TCTGGCCGTTCTTGGCAAGGGAAGTTTCGGCAAGGTTCTGCTTGCTGAGC
TGCGTGACACCACATACTACTATGCCATTAAGTGCCTGAAAAAGGATGTT
GTCCTGGAGGATGACGATGTTGACTCCACGCTCATCGAACGCAAGGTCCT
GGCCCTGGGCACCAAACACCCGTATCTGTGTCATCTGTTTTGCACCTTCC
AAACGGAGAGCCACTTGTTCTTTGTGATGGAGTACCTGAATGGCGGTGAT
CTCATGTTTCATATCCAGGAGAGCGGTCGCTTTTCGGAGGAGCGAGCCAG
ATTCTATGGGGCCGAAATCATCTCGGGCCTTAAATTCCTGCACAAAAAGG
GCATTATCTATAGAGATCTCAAACTGGATAATGTCTTGCTGGACTACGAG
GGACATGTTCGCATTGCCGATTTTGGCATGTGCAAGTTGCAAATCTATTT
GGACAAGACGGCAGATAGCTTTTGTGGCACACCCGATTATATGGCGCCCG
AAATCATTAAGGGTGAAAAGTACAATCAGAATGTGGATTGGTGGTCGTTT
GGTGTGCTGCTCTACGAAATGCTAATTGGACAGTCGCCATTCAGTGGCTG
CGATGAAGACGAGCTCTTCTGGTCCATTTGCAATGAAATTCCATGGTTCC
CAGTTTACATATCCGCCGAGGCAACCGGGATTCTCAAGGGGTTGCTGGAG
AAGGACTATACGAAGCGTATTGGTTCGCAGTACAGCCCAGCTGGTGATAT
AGCCGATCATATATTCTTCCGCCCGATCGATTGGGGTTTGCTGGAAAAGC
GACAAATCGAGCCGCCCTTCAAGCCGCAAGTGAAACATCCCCTGGATACC
CAGTACTTCGATCGGGTCTTCACCAGGGAAAGGGTGCGTCTAACACCCAT
CGATAAGGAGATATTGGCATCCATGGATCAGAAGCAGTTCCACGGCTTCA
CCTACACAAATCCTCACATCACCTTGGACTAGAAGCTTTCTAGACCAT
BS30924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkcdelta-RD | 2016 | CG42349-PD | 1..2016 | 17..2032 | 10065 | 100 | Plus |
| Pkcdelta-RC | 2016 | CG42349-PC | 1..2016 | 17..2032 | 10065 | 100 | Plus |
| Pkcdelta-RE | 5685 | CG42349-PE | 4600..5685 | 947..2032 | 5415 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkcdelta-RD | 3043 | CG42349-RD | 669..2685 | 17..2033 | 10070 | 100 | Plus |
| Pkcdelta-RC | 3219 | CG10524-RA | 845..2861 | 17..2033 | 10070 | 100 | Plus |
| Pkcdelta-RE | 6288 | CG42349-RE | 4844..5930 | 947..2033 | 5420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12436011..12436332 | 108..429 | 1610 | 100 | Plus |
| X | 23542271 | X | 12452676..12452857 | 1560..1741 | 910 | 100 | Plus |
| X | 23542271 | X | 12451271..12451446 | 1083..1258 | 880 | 100 | Plus |
| X | 23542271 | X | 12452218..12452374 | 1257..1413 | 785 | 100 | Plus |
| X | 23542271 | X | 12452438..12452591 | 1409..1562 | 770 | 100 | Plus |
| X | 23542271 | X | 12453141..12453292 | 1882..2033 | 760 | 100 | Plus |
| X | 23542271 | X | 12451073..12451212 | 947..1086 | 700 | 100 | Plus |
| X | 23542271 | X | 12452916..12453057 | 1741..1882 | 695 | 99.3 | Plus |
| X | 23542271 | X | 12436858..12436987 | 632..761 | 650 | 100 | Plus |
| X | 23542271 | X | 12436538..12436653 | 430..545 | 580 | 100 | Plus |
| X | 23542271 | X | 12450283..12450387 | 760..864 | 525 | 100 | Plus |
| X | 23542271 | X | 12435252..12435344 | 17..109 | 465 | 100 | Plus |
| X | 23542271 | X | 12436712..12436797 | 546..631 | 430 | 100 | Plus |
| X | 23542271 | X | 12450793..12450878 | 862..947 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:32:48 has no hits.
BS30924.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-02 10:52:51 Download gff for
BS30924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RD | 624..2639 | 17..2032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:04 Download gff for
BS30924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RC | 845..2860 | 17..2032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:31 Download gff for
BS30924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RC | 845..2860 | 17..2032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:31 Download gff for
BS30924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12435252..12435344 | 17..109 | 100 | -> | Plus |
| X | 12452443..12452590 | 1414..1561 | 100 | -> | Plus |
| X | 12452917..12453057 | 1742..1882 | 99 | -> | Plus |
| X | 12453142..12453291 | 1883..2032 | 100 | | Plus |
| X | 12452678..12452857 | 1562..1741 | 100 | -> | Plus |
| X | 12452220..12452374 | 1259..1413 | 100 | -> | Plus |
| X | 12436013..12436332 | 110..429 | 100 | -> | Plus |
| X | 12436538..12436653 | 430..545 | 100 | -> | Plus |
| X | 12436712..12436797 | 546..631 | 100 | -> | Plus |
| X | 12436858..12436987 | 632..761 | 100 | -> | Plus |
| X | 12450285..12450386 | 762..863 | 100 | -> | Plus |
| X | 12450795..12450878 | 864..947 | 100 | -> | Plus |
| X | 12451074..12451210 | 948..1084 | 100 | -> | Plus |
| X | 12451273..12451446 | 1085..1258 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:04 Download gff for
BS30924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12344828..12344911 | 864..947 | 100 | -> | Plus |
| arm_X | 12345107..12345243 | 948..1084 | 100 | -> | Plus |
| arm_X | 12330571..12330686 | 430..545 | 100 | -> | Plus |
| arm_X | 12330745..12330830 | 546..631 | 100 | -> | Plus |
| arm_X | 12330891..12331020 | 632..761 | 100 | -> | Plus |
| arm_X | 12344318..12344419 | 762..863 | 100 | -> | Plus |
| arm_X | 12329285..12329377 | 17..109 | 100 | -> | Plus |
| arm_X | 12330046..12330365 | 110..429 | 100 | -> | Plus |
| arm_X | 12345306..12345479 | 1085..1258 | 100 | -> | Plus |
| arm_X | 12346253..12346407 | 1259..1413 | 100 | -> | Plus |
| arm_X | 12346476..12346623 | 1414..1561 | 100 | -> | Plus |
| arm_X | 12346711..12346890 | 1562..1741 | 100 | -> | Plus |
| arm_X | 12346950..12347090 | 1742..1882 | 99 | -> | Plus |
| arm_X | 12347175..12347324 | 1883..2032 | 100 | | Plus |
BS30924.pep Sequence
Translation from 16 to 2031
> BS30924.pep
MMFTRAQVRKQKTSNSSSQRPRSSGGSTRHETRYKQSSTSSSGAGSGLSG
ASGASGARRDQYRDRDHYGKHSFELPRQHSKEEAYHRDRESSAGGVDRGE
RSGIGGNGGGVTGGGVYVDRRTRPRSITNRRGAIKHQKTHDINGHRFVAK
FFRQPTFCAFCNLFLWGFGKQGYQCIICQTVVHKKCHDKLLGKCSGSVFT
SASTILLRERFKIDMPHRFKPHTFMSPTFCDHCGSLMGGFFIQGLKCEEC
DVNCHKKCERLTANLCGVNQKLIVEALNHVKRGAREARDSPSTPPSLNPA
YKIEASEEHDETSYTYSQFQKSGRFTAPATVIPRFKNYSVDDFHFLAVLG
KGSFGKVLLAELRDTTYYYAIKCLKKDVVLEDDDVDSTLIERKVLALGTK
HPYLCHLFCTFQTESHLFFVMEYLNGGDLMFHIQESGRFSEERARFYGAE
IISGLKFLHKKGIIYRDLKLDNVLLDYEGHVRIADFGMCKLQIYLDKTAD
SFCGTPDYMAPEIIKGEKYNQNVDWWSFGVLLYEMLIGQSPFSGCDEDEL
FWSICNEIPWFPVYISAEATGILKGLLEKDYTKRIGSQYSPAGDIADHIF
FRPIDWGLLEKRQIEPPFKPQVKHPLDTQYFDRVFTRERVRLTPIDKEIL
ASMDQKQFHGFTYTNPHITLD*
BS30924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkcdelta-PD | 671 | CG42349-PD | 1..671 | 1..671 | 3618 | 100 | Plus |
| Pkcdelta-PC | 671 | CG10524-PA | 1..671 | 1..671 | 3618 | 100 | Plus |
| Pkcdelta-PE | 1894 | CG42349-PE | 1534..1894 | 311..671 | 1941 | 100 | Plus |
| Pkc98E-PB | 554 | CG1954-PB | 24..545 | 177..666 | 1156 | 44.6 | Plus |
| Pkc53E-PD | 525 | CG6622-PD | 195..519 | 342..666 | 991 | 58.2 | Plus |
