BS30925.complete Sequence
3140 bp assembled on 2012-07-30
GenBank Submission: KX801011
> BS30925.complete
GAAGTTATCAGTCGACATGGTGAATGTACCACCGCTGCTCTGCAGCACCC
CCCCGCCCATCGATTTTGGTGAGGAAGACGACGATTCCGGTTTACAATCC
ACCATCCATTTGGACGAGGGTGACGAATACTCAGATTTTGGCTTAGTCAG
CAGCTCGAAAGAACCCCCTCCACCACCAGATCCCGTGGAGGAATTTCGAG
AAAAGCCACCTGATTTGCTGGAAGACAAACAAACCGTCGAGGCATTTAAT
TACCAGGTGAAACAGAAGATGGATTACGATGTTTTCGAGGAAACAGCACC
GCCGACGCCGCCTCCGTTGAGCTTGGAACTGGATGATGAGGAACTGGAGG
AGCATGTGCCCTCCCTTAAGTTGGACAGTCTAAGTCTCTATTCCACGGAA
AGCGTTTCTGCCGCCTCCACACTCTCACCGGTTGCGGAGACTAGTGCAGT
TGCTCCGCCGGCTATGCAAACAACCAAAGCCCATATCCTCAGCCACCAAG
TCACGCTGGAGGATGTGTCCGATGACAGCGACGAGGAGTGCTCGCCAAAG
AAGCCCAAAGAACTATTTATACGCGAGGGAGCTGTGGATTTCTTTGCCAT
AGAGGTATTGGCCACTCCAACCCTACCATATGGAGAAGGCTTTTCGGAGG
AGAATGTGGATACAGGGAAAGGAGAATACGTAGAGAATACCTCCCAGCCA
GAAGAAAGCTTTAGAAGTTTGGAAGCCCAGGAGGAAAGTTCAAATACCTT
AGAAAAGCCTATGGAAAATCAAAGCCGTGGCTTATCAAATCCTCCAAATC
AGGAGGAATCCCCTCACCAATGGGGTGAACCAGCAAATAGTGATACATAT
TCATTTACAAATCTTGATGCGACGCCAAAAGACTTAGTACACAAAGAAAT
TGTTCCCGAAATGCAAGAGCAAGAAGATGATGATGACTTCGGTGACTTTG
CGGATTTCTCAGCAGCAGAACCCCAACTAGAAATCACGGAGAATTCAACG
TCTGCCTTTGAGACACCTTCCTTAGCAATCAATTCCCGAACGGAATCTCA
ACCTCTAGAGGTTAAGACGGCTCCTAGCACAGAAGAATCCTCTAAGTTAC
CTCCTGCAGAGACCGATGATGGCTTCGATGATTTTCAGGAGTTTGCCACT
CCTGCGAATGGAAACCACGGTCAAAGCGAAGACGACGATGATTTTGGCGA
CTTCGCCGCGCCCGTAGTGACTCCTGTTTCTGTACCTCCGCCACCGCCGC
CAGCTGCTGTCCATCTGAGCATAGATGAAAGGGTTAAGCCAGTCCTTGAT
ATGATGTTTCCACAACCAACGGAACTGGACAGCAAAAGTATGGACAATCG
CAGGCCTTTGGCTCAGTGCCAGCGATTCAATTTTGGTGCCATAGAGCATG
CCCAAGCCCTTGATTACCAATGGAGCAGCTCGGAAATGAGACACGCCCTT
GTTCGATCGCTGGGCATCGATTCAAGGAATATACTCTTCGGCGACAAGTG
GAACTCATCGATGCCACGTTTTGCTGCCAACCTGAGCTTTGATCCGCTGA
AGCCGCTGAAACCTCAATCAACCGGCGCCGCAAGCAGCCTGGAGCCCATT
TCCAATTCCACCAGCTACCAGGGATTGGAAAACGCCGCCGCAACAACGGC
GAGCCAAACTGAAACGCGGACTGGCCCGTCTCATGGGGAAGGCTCCACCG
GCTCCTGTTCCGCCAGCAATTCCGACGGCGAAGAGCGACCGAGTCATAGC
CACCAGCCAACTGCAGTCCCCAGCCCCGAATCGAACCATATTGAATCCAC
AGCAGCGGCATCAGCAGCAGCTGTTGCTGCAGCAGCAGCGACGCTACCGA
CTACTCTATCAGCAGACAGCCCTGCCCACAAACTCAACGGCGGTGAGCAG
CTGCATCAGCAGCGGTCGGAGCCGGAGCAGTTTGATTTGAGGACCACTCC
TCCGGCCGCAGCGCCAGCTCAGGAGGAGATCGTGGGCAGCTCGATGGCCA
GCTATTCGGTGCCGCTGAAGGAGACCCATATCTATACGCCCTCCAAATCG
GATACGGCGGTGGCCAAGACCACCACACTAGCGCCCATTGATTTCGACTA
CGAGATGGCTGCGACGGGCATTATCATCGATGAGACGGTGGTGAAGAAGG
AGTATCGCGACGTGGAGTACAAACCCCCATTTGGTCTGGATTCGCCCAGC
AAACTGAGTGGCAATGGAGCTGCCAGCAGCTTTCAGTTGCCACCACAGAC
GACGGAAGATGACGACTTTAGTGATTTTCAATCTATGCCGGCGCCAAGGT
CTCGAATTGATACACCCACTTTTGGCGAACAGATGATCCTTAGTCCGGCT
ATTCTGCTGCCCCAAGCCATTCCGCTGGCAAAGAAGCCAGCTGCAACTAT
TGAATGGGGCGACAATGCTCTGTCTAGCATAAATGCCGAGGAAATGGCCA
GGATAGAGGAGTTGTTCTCCTCGCAGGCCAAACCGCTCACCATAAGCGCT
TCGGTGGCCAAGAAACCAGCTCCTTCCACGCCAGCTCAGTCTCAGCCTCA
AGAAGACGATGAATGGTCGGACTTTGTCTCTGTTCCAGTCACCCAACAGC
AACCGCATCATCAGCAAAACGCAATTGCTAACAACAATAATATAGTCAAC
AGCAACGCTAGGAAACCAGCTGCTCCCAAAGAAGATGATTGGTCGGATTT
TGTGAGCAGTACTCCGCCAGCACGACCGGCTCCACAATTCAATTCCGGTG
CGTGGCAGAGCGCTAATTTCTACAACAATCCCTTGAGTTTGTACCAGGCG
CAGCAGCAGCTGCAGCAACAGCCTCATAGCAATCTAGTGCCCAAGGGCAG
CACCAGCAGCAGCAATAACAACAATGTGCCAGCCATTCCACAGCAAATAC
ACATCATGCACGACTTCTCGACTGCACCCGTGTCTGGAGGATTGGGTGTG
GGTGCCACCTACCAGCAGCAGCATCAGCGGCAGCAGTTCCAAATCGGCAA
CGCCAAGGTGGCTCCACGCATCTCCCTGATCCCCGATCTCAGCTTCGTTG
CACCGGCCTTGCCCACAAATGCTGGTGCGTTCATGGGTGCGCTACCGAAA
CCCACTTTCGGTGGCAAGAAATGAAAGCTTTCTAGACCAT
BS30925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Afti-RB | 3108 | CG8538-PB | 1..3108 | 17..3124 | 15540 | 100 | Plus |
| Afti-RD | 3108 | CG8538-PD | 1..3108 | 17..3124 | 15540 | 100 | Plus |
| Afti-RC | 3108 | CG8538-PC | 1..3108 | 17..3124 | 15540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Afti-RB | 3923 | CG8538-RB | 409..3516 | 17..3124 | 15540 | 100 | Plus |
| Afti-RD | 5111 | CG8538-RD | 409..3516 | 17..3124 | 15540 | 100 | Plus |
| Afti-RC | 4225 | CG8538-RC | 409..3516 | 17..3124 | 15540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14321786..14323288 | 3124..1622 | 7515 | 100 | Minus |
| 3R | 32079331 | 3R | 14324757..14326080 | 1483..160 | 6620 | 100 | Minus |
| 3R | 32079331 | 3R | 14326137..14326281 | 161..17 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 14324559..14324698 | 1623..1484 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:58:53 has no hits.
BS30925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:23 Download gff for
BS30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8538-RB | 402..3508 | 17..3123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:27 Download gff for
BS30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Afti-RC | 409..3515 | 17..3123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:50 Download gff for
BS30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Afti-RC | 409..3515 | 17..3123 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:50 Download gff for
BS30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14321787..14323287 | 1623..3123 | 100 | <- | Minus |
| 3R | 14324560..14324698 | 1484..1622 | 100 | <- | Minus |
| 3R | 14324757..14326078 | 162..1483 | 100 | <- | Minus |
| 3R | 14326137..14326281 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:27 Download gff for
BS30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10147509..10149009 | 1623..3123 | 100 | <- | Minus |
| arm_3R | 10150282..10150420 | 1484..1622 | 100 | <- | Minus |
| arm_3R | 10150479..10151800 | 162..1483 | 100 | <- | Minus |
| arm_3R | 10151859..10152003 | 17..161 | 100 | | Minus |
BS30925.pep Sequence
Translation from 16 to 3123
> BS30925.pep
MVNVPPLLCSTPPPIDFGEEDDDSGLQSTIHLDEGDEYSDFGLVSSSKEP
PPPPDPVEEFREKPPDLLEDKQTVEAFNYQVKQKMDYDVFEETAPPTPPP
LSLELDDEELEEHVPSLKLDSLSLYSTESVSAASTLSPVAETSAVAPPAM
QTTKAHILSHQVTLEDVSDDSDEECSPKKPKELFIREGAVDFFAIEVLAT
PTLPYGEGFSEENVDTGKGEYVENTSQPEESFRSLEAQEESSNTLEKPME
NQSRGLSNPPNQEESPHQWGEPANSDTYSFTNLDATPKDLVHKEIVPEMQ
EQEDDDDFGDFADFSAAEPQLEITENSTSAFETPSLAINSRTESQPLEVK
TAPSTEESSKLPPAETDDGFDDFQEFATPANGNHGQSEDDDDFGDFAAPV
VTPVSVPPPPPPAAVHLSIDERVKPVLDMMFPQPTELDSKSMDNRRPLAQ
CQRFNFGAIEHAQALDYQWSSSEMRHALVRSLGIDSRNILFGDKWNSSMP
RFAANLSFDPLKPLKPQSTGAASSLEPISNSTSYQGLENAAATTASQTET
RTGPSHGEGSTGSCSASNSDGEERPSHSHQPTAVPSPESNHIESTAAASA
AAVAAAAATLPTTLSADSPAHKLNGGEQLHQQRSEPEQFDLRTTPPAAAP
AQEEIVGSSMASYSVPLKETHIYTPSKSDTAVAKTTTLAPIDFDYEMAAT
GIIIDETVVKKEYRDVEYKPPFGLDSPSKLSGNGAASSFQLPPQTTEDDD
FSDFQSMPAPRSRIDTPTFGEQMILSPAILLPQAIPLAKKPAATIEWGDN
ALSSINAEEMARIEELFSSQAKPLTISASVAKKPAPSTPAQSQPQEDDEW
SDFVSVPVTQQQPHHQQNAIANNNNIVNSNARKPAAPKEDDWSDFVSSTP
PARPAPQFNSGAWQSANFYNNPLSLYQAQQQLQQQPHSNLVPKGSTSSSN
NNNVPAIPQQIHIMHDFSTAPVSGGLGVGATYQQQHQRQQFQIGNAKVAP
RISLIPDLSFVAPALPTNAGAFMGALPKPTFGGKK*
BS30925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Afti-PB | 1035 | CG8538-PB | 1..1035 | 1..1035 | 5386 | 100 | Plus |
| Afti-PD | 1035 | CG8538-PD | 1..1035 | 1..1035 | 5386 | 100 | Plus |
| Afti-PC | 1035 | CG8538-PC | 1..1035 | 1..1035 | 5386 | 100 | Plus |
