BS30938.complete Sequence
3972 bp assembled on 2012-09-12
GenBank Submission: KX805726
> BS30938.complete
TTTTTTTCGTGGACGCTTTTCGCGTTTTTCGTGCGCCGCTTCACATACAT
TATACGAAGTTATCAGTCGACATGGGGGAACGTTTCTATAGATGCTGGCC
GTTTGATAGAAACGGAAAAGTCGAAAACATATATGTAATGGAACATTCCG
ATCCCGTGCCTTATCAACAGCTATCGACATTATCGCCGACCACCGCACTA
TACTCGAACTTTAACAACTCTTTGGAAGCAGGAACCGCAGAAAGACTACG
CCTTAATAAAACTGGGTCACAGGTCCACAGCCTATATGTCGGCGACGGTC
AAGTGCAAAATGCTTCTGAACCCTTATCTTTTCCCAGCCACCTTAATCTG
TACCAATATGTTCGTACCCCGGCAAACTTCACTATTAACAGCCGCAACCG
ATATATTCCGTACTATAACAATCGTTCCTACTCTGCTTCAACAACTGGTT
TCCCTATAGCCAGTACTCCGCTGATCAGCAGCCATGCGCACATCCAAGAC
CAACAAGGTGCAGCGTCTTATCAAACGATTGTTCCGCTTTATCAGACCGC
AAGCCACTGTGCGCAGCAACATACAACATTGGCATCGGTAGCTCCAATCG
TGGACAATTCATTCGTTGAAAGCACCACTTGCCCCATGGCCGGCATCACC
TCTCACAACATCAAAATGAAAATGATTCCTCCCAATGTATTGTTGCCTTG
CTCCAGGCCTACGACAACCGCGGTGACCATCCAAAGGTCAACCGGAGAAG
ACGGTGGAGATAAAGAAGGTCATACTTTTGCTAAGATTACGGAGATGAGC
GATGCTGTTACTTTGCAGATCACCAACTTGGACTACTCGCTGGACGAATC
ACATATACGCAGCTTTCTACTTAATCAGCTTAAGCCCATTACGCCAGTTG
TGTCACTTGTCTTCGAGGGAAGCTCCTATGCCAAAGTCACTGTTCCAGAT
CTTTATTTCGCAAAGCAGGTCGTCTCCAATTTGCACCGCAAGAAGATTGG
ACACAAACGCATGCTGGTCAGTTATACTCGAGATTCCTCCCTCACCGAGG
TCAACACACTCCGCTGCCAGGTCGCAGGACTTCTAAAGGATGTCCCATTC
AACACCCTCCCCATGTATAAGTTTAGAGAACTATTTCAGTCCCGCTTCAA
AACCTCTATCAGTGTTTTAGATTTGTACAAAATGCAAGACATATGTACCA
TTAACTCGGATAACAATGAAGAAAAGTTTATCAGCTTAAATCCGGAATTA
GTAAACACCCTCGATATATCCCCCTTAATGGAAGGACTCCAACATAGTGT
TCCTTACTGTAGTATTCATTTTAAAAAGGAGCAGCACAAGGGATGGGCCG
AGCAGGAAATCGAGCCACTACCAAACGTCTTCATGAGCATTTCGGAAATT
CAGAAACTAATTTATCCACTTCTCAAGGTACACACGGGGGATATTCCGGT
GGCTACCCTTCTTCACTGCGTTAAAGAAGAGCTTAATGTGTCAATAATGG
CGAACGAAAATGGCGTTAACTTGGAGCATTTGATCTGCTGTGTTCAGGGA
ATTCAAGTTCGGGCAAACAATTTTGGAATTAAAATTCTCGGATGGTTAGA
AATAAACAAAGAAATGCAATCAGGAACTTTTAATGCCAGTTCTAATACAT
GTAGCCTGACTGCAAGTGATCGCACAAATTGTGGAAGCTATTTCAAAAAC
TCAGTTGCCGATCCGCTTTTCCAAATTTCCCGGGAGGTTATAGAGCTGCT
AAAGATGTCACCAAAATCAACTATGAAATTCAACCGTTTTATTCCGGCCT
ACCACAATCACTTTGGAAAGCAATGTCGAGTTGCAGACTATGGCTATACA
AAGTTAATCGAATTGTTTGAGGCATTATCAAACGTTGTCCAAATTATGGG
AGACGGCGAAAATCGTCAAATTACGCTATCCCACCGTATTCAAATACGCA
GGTTTACATCAGACTTATTGCGTGTATTGCGCGCTAATGGTAACAACTCA
GTCCTGCTTTCCCAGTTGCCATTAGTTTTTACACAGACCCAAAATAAAAC
TTTTGATATTACTGATTATGGAGTGTGCGACCTTATAGACATTCTAGACG
GCTTGGTAAGCTCCAACATCGTGACTTTAGGCGCAGCACAGAACGGAAAA
GATATTCTTATATCAATGCCAAAACGAAAGCAGACAAACAGTGAATTGGA
GAAAACGTGTGTGTTCGCCGGCGAAATGGTTGAGCTCTTCCAAAACGCTC
TTCAGTACACTATTCTATTTCAGAAGTTTGTACGGTCCTATCATTACCAC
TTTGCATACCAATGTCGTCTCAGTGATTACGGCTTTCTTAAATTGGCCGA
TCTTCTAGATGCAATTAATGGTTTGGTGGAAATGAAGTTGACAAGTGATG
AGGACAAGAAAATAGTTCTCTCCCCACAAGTAGCTAGAAGAGTTTTCGCT
GAACAATGTGAAAACCTAATTCGCAATGCCACAGGAAACTCATCGCATTG
TATGAAGCTAGAACAGGTGCTGGTATTGCACAAAAAGAAATATGGCTACC
AAATTCAGCCGAAAACTTTGGGAGTCATGGATATGGCTACGGCAGTTGAG
CTGTTGCCTTACGTCGAGCTAAAGAAAAAAGAACAGGCCATTTGGCTCAT
CTGTCACAACAACGATCATGAATTTCGTTTTCTTTGCTATAGGGTGTGTA
AGTATGTCATGGAAAGGGACCCTTCTGCATCAGTTTGGACAAACGTTAGA
GGTGAAGTTAAGTTAACTAAATCTCAACAATTCGTAAAACCAATTGAAAA
AAGCATATTGGTTAGGGATTTCAATGCTAAGTATAAAGACCATCTTTCAG
AGTCAGCTCTTTTAGCCATGCGACAAGCGATTGAGGTATATGATGATGGT
GGCATACAGTGTATTCGTCTTACCCGTTTCATGAAGTTTATAATTGCCAT
TGTGCGTATGCTTGAACAGCGGCCAAGCATGTATCTCTATGAGATCAAGA
ATGGTTTAAACTGTGGCCTTAGCACCACTTTTGAATTCGGATTCCCAAAT
TTATATTCAGTGGTTGCAGCACATAAAGACCTATTCAGTATTAACAACGG
ACCAACGCAAGAAAGAAGCGAGGTTTCCATTAATATGAACTGTGAGCTTC
GTCAAAGTTCTTTAAGCAAAGACCAGTGCGTCCTGGAATCCCAGAAGCTA
ACAAATTCCAAACATAGAGCACAACGGAGCTTCCATAGTCACATTGGCGA
GCATAATGGACTTCCAATCAGTCAGCCCCCCCTGAAACGAAGCGCAACAA
TCAATAATTGTTCAACATTCCAAACATATCATGCTGATACCGACATATTT
AATGTGCCAGCGAATTGTTTACCGCCAAGAACCAACTTATCATTGCCTAA
TAGTTTCGGATCATCTCTGGAAAGTGGAAGTTTTTCCAATAGTTACAGCA
ACAAGGAAAACTCTATGAAATCTCTTCACTTGTTCAACAGTTCATTTAAT
TCGTCTGGCGAGCTAAATGCCAGTCTAGGCGCAGGAGATTTAACAAATAT
ATCTTTAGGGACAGGTATCGCAGTTGATACATCAAATGAACCATCCGAAC
TTTGGCGTAGACGTCAACAAAACTTTAATCGCCCTAATTCATCAAATTTT
CGTAAATCAGATAATGGAACTGACGGTACTTACACCATTGGAAATTACAT
CGCACCACCAATAGGATCCATTTACGAGCCACTAAAGTATAATGGTCAAG
ACAAAGAGAAATTACCCTTTTGGATTGATCCCATTTGGAGCAAAGGATCG
GAACAGCTGAGGCATGACATACTTAACATTCGACTTCCTAAGGCCAGAAC
AACTAAAACGTTTTCCAATATACTTTCGCCTTACACCATTTCGAAAAATG
AAAATTTGAAGCGACAGTTGTTTAGTTTTGATAATCACGATCGTAAAATA
GCTTGAAAGCTTTCTAGACCAT
BS30938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RC | 3885 | CG17018-PC | 1..3885 | 72..3956 | 19410 | 100 | Plus |
| CG17018-RF | 3918 | CG17018-PF | 54..3918 | 92..3956 | 19310 | 100 | Plus |
| CG17018-RD | 3918 | CG17018-PD | 54..3918 | 92..3956 | 19310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RC | 4395 | CG17018-RC | 178..4062 | 72..3956 | 19410 | 100 | Plus |
| CG17018-RE | 4815 | CG17018-RE | 596..4462 | 90..3956 | 19320 | 100 | Plus |
| CG17018-RF | 4749 | CG17018-RF | 552..4416 | 92..3956 | 19310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22365375..22367176 | 1087..2888 | 9010 | 100 | Plus |
| 2L | 23513712 | 2L | 22363426..22364294 | 88..956 | 4345 | 100 | Plus |
| 2L | 23513712 | 2L | 22367566..22368176 | 3148..3758 | 3055 | 100 | Plus |
| 2L | 23513712 | 2L | 22367234..22367497 | 2884..3147 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 22368244..22368443 | 3757..3956 | 985 | 99.5 | Plus |
| 2L | 23513712 | 2L | 22365193..22365325 | 957..1089 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:04:23 has no hits.
BS30938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-12 10:03:40 Download gff for
BS30938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 165..4057 | 63..3955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:36 Download gff for
BS30938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 169..4061 | 63..3955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:41 Download gff for
BS30938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 169..4061 | 63..3955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:41 Download gff for
BS30938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22368246..22368442 | 3759..3955 | 99 | | Plus |
| 2L | 22363430..22364294 | 92..956 | 100 | -> | Plus |
| 2L | 22365193..22365324 | 957..1088 | 100 | -> | Plus |
| 2L | 22365377..22367173 | 1089..2885 | 100 | -> | Plus |
| 2L | 22367236..22367497 | 2886..3147 | 100 | -> | Plus |
| 2L | 22367566..22368176 | 3148..3758 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:36 Download gff for
BS30938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22363430..22364294 | 92..956 | 100 | -> | Plus |
| arm_2L | 22365193..22365324 | 957..1088 | 100 | -> | Plus |
| arm_2L | 22365377..22367173 | 1089..2885 | 100 | -> | Plus |
| arm_2L | 22367236..22367497 | 2886..3147 | 100 | -> | Plus |
| arm_2L | 22367566..22368176 | 3148..3758 | 100 | -> | Plus |
| arm_2L | 22368246..22368442 | 3759..3955 | 99 | | Plus |
BS30938.pep Sequence
Translation from 71 to 3955
> BS30938.pep
MGERFYRCWPFDRNGKVENIYVMEHSDPVPYQQLSTLSPTTALYSNFNNS
LEAGTAERLRLNKTGSQVHSLYVGDGQVQNASEPLSFPSHLNLYQYVRTP
ANFTINSRNRYIPYYNNRSYSASTTGFPIASTPLISSHAHIQDQQGAASY
QTIVPLYQTASHCAQQHTTLASVAPIVDNSFVESTTCPMAGITSHNIKMK
MIPPNVLLPCSRPTTTAVTIQRSTGEDGGDKEGHTFAKITEMSDAVTLQI
TNLDYSLDESHIRSFLLNQLKPITPVVSLVFEGSSYAKVTVPDLYFAKQV
VSNLHRKKIGHKRMLVSYTRDSSLTEVNTLRCQVAGLLKDVPFNTLPMYK
FRELFQSRFKTSISVLDLYKMQDICTINSDNNEEKFISLNPELVNTLDIS
PLMEGLQHSVPYCSIHFKKEQHKGWAEQEIEPLPNVFMSISEIQKLIYPL
LKVHTGDIPVATLLHCVKEELNVSIMANENGVNLEHLICCVQGIQVRANN
FGIKILGWLEINKEMQSGTFNASSNTCSLTASDRTNCGSYFKNSVADPLF
QISREVIELLKMSPKSTMKFNRFIPAYHNHFGKQCRVADYGYTKLIELFE
ALSNVVQIMGDGENRQITLSHRIQIRRFTSDLLRVLRANGNNSVLLSQLP
LVFTQTQNKTFDITDYGVCDLIDILDGLVSSNIVTLGAAQNGKDILISMP
KRKQTNSELEKTCVFAGEMVELFQNALQYTILFQKFVRSYHYHFAYQCRL
SDYGFLKLADLLDAINGLVEMKLTSDEDKKIVLSPQVARRVFAEQCENLI
RNATGNSSHCMKLEQVLVLHKKKYGYQIQPKTLGVMDMATAVELLPYVEL
KKKEQAIWLICHNNDHEFRFLCYRVCKYVMERDPSASVWTNVRGEVKLTK
SQQFVKPIEKSILVRDFNAKYKDHLSESALLAMRQAIEVYDDGGIQCIRL
TRFMKFIIAIVRMLEQRPSMYLYEIKNGLNCGLSTTFEFGFPNLYSVVAA
HKDLFSINNGPTQERSEVSINMNCELRQSSLSKDQCVLESQKLTNSKHRA
QRSFHSHIGEHNGLPISQPPLKRSATINNCSTFQTYHADTDIFNVPANCL
PPRTNLSLPNSFGSSLESGSFSNSYSNKENSMKSLHLFNSSFNSSGELNA
SLGAGDLTNISLGTGIAVDTSNEPSELWRRRQQNFNRPNSSNFRKSDNGT
DGTYTIGNYIAPPIGSIYEPLKYNGQDKEKLPFWIDPIWSKGSEQLRHDI
LNIRLPKARTTKTFSNILSPYTISKNENLKRQLFSFDNHDRKIA*
BS30938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-PC | 1294 | CG17018-PC | 1..1294 | 1..1294 | 6746 | 100 | Plus |
| CG17018-PF | 1305 | CG17018-PF | 19..1305 | 8..1294 | 6707 | 100 | Plus |
| CG17018-PD | 1305 | CG17018-PD | 19..1305 | 8..1294 | 6707 | 100 | Plus |
| CG17018-PE | 1272 | CG17018-PE | 1..1272 | 23..1294 | 6616 | 100 | Plus |
| CG17018-PA | 1272 | CG17018-PA | 1..1272 | 23..1294 | 6616 | 100 | Plus |
