BS30946.complete Sequence
2930 bp assembled on 2012-07-30
GenBank Submission: KX806164
> BS30946.complete
GAAGTTATCAGTCGACATGGAAAAGCAGGAGGTCCTGGAATACGTGGCCA
AGGTGGTCAGGGCCCTAATCACGTCAGCTAAGCCGCCGGTTACGCTGCGG
TCCATCGTCGCAGATTACATGGAGATTGAGGGTGAGCCGATACCCTTTCG
CAGGCTGGGCTACTCGAATGACCAAGAGCTGCTTAAGGATTCGAATCAAT
TCAACTTTCACCAAAGCGGTAATCAGGTGTTCATCACAGCGAAGTATAAC
GCTAACACAGAACATATTGTGCGTATGGTACGTCAGCAGAAGACCAGCAA
GTCCACAAGCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAA
TTGCCCAGAAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAAT
AAGCAGCCGAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTG
TGAGAATCAGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAA
CCCAAGAGCTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAA
AACCTGCAGGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAA
AGAGCTTAAGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAG
TCGCTAGGGAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACG
GAAACGATCTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGG
ACATGGACCAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATG
ACGGCAAACCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGC
CAGCAAGATACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCG
GCCACGTCATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCG
TCTCTGTGAATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACG
CCAGCGGTAGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAAC
GACAACCGCCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGTCAAG
GTGAAACAGGCAATGTCGTTACAAATCCAAAAGTTAAGGTGCCACTTAAA
TTCGATCCCTCACTTGATCCCGTCTCCACGCTCAACTTCTATTGCGCGGC
AAATGACTTTGAGAAACCTGCATACAACATATTCAACAAGCTACGGAACC
TACATTGTTCAGTGCAAATCGCTGGCGATGTTTACAGTAGCTATCCGCAG
GAGTTCACCGATAAGGAGACAGCATACCAACGCACAGCACAGATCGCCAT
CCAGCGCATCATGCATGCCCAGTCACACCAAAAGCTTTCTGCTTGCACAT
TTAGCGATGTGGAGTTTATCGATGGATTGTACAAGGAGCTGTTAAAGCAC
CCACATGGCATATTGGGTCACAAGCTGGAGGATTGGTACGGCAGCACCTT
CCGGCAACATCTGCCCAGTCATTGGTACGATTTGATCGTGAAGTCAAATA
AAATTCGTGTTGAGCACGGCATTGATCCAAGGATCATATTGTTTGCCAAC
GATCCTGGTTCATCGGAGCCGGACCGCACCAGCATAACCACCCTGCCACA
GATGGTGCTGCCGTGGCAGTCAAGCGAAGGAGGATCGCACGACTGGAACA
TGTTCATCAGCTTCTGCGACTCCACCAAGATAGTGTGGGCTCGGATGATC
GATCAGATCGCAAACTTTGAGGAACTGACGAAGCATATTGGACGCCAAAT
GGAGTCTCCGCATTTCCGACAAAAGGTCTCTAAACCTTACGCTCAGGAAG
TCTATTTAGTGGAGATGCCCGATGGCTGGAATCGTGTTCGTGCAATTTCT
GTGGATGAGGAGACCCGCTCGGGCCGTTATCACTTTATCGACTTTGGCGA
TGTGGCAATGTTTCATTCAGAAGATCTCTTCCACTGTCCACCGCAGTTCT
TGGCGCTCCCGGCCCAGGCCGTGTGCCTCAGCATGTATGCGTTGGATAAG
TTCGAGGATCATCCGCACGCTCTGCAGGTTTTAACAAAGGAGCTGGACGG
CCAGACGGTTGTGGCCCATGTGCTCACCACGGAGAAGCAGTTCCTGGAAC
TGGGTGGATCTGCCCAGGGTGTGGTGGAGAACGGTAAGCGTCGGGCGTGC
TTGGTGGCCACGCTGTACGACACCTCAACGGCTGAGGACATTCATCTGAA
CGATCTGGTTGCGAAAAGAATAACGAAGTGCACGCCGGCACCATCGCTGA
GTGATGAAAAGAAGATCGGCAAGACCACGCCCATTCTTGTGTCTCACATC
AACGATGATGGTGATCTAATGGTGCTGCTACGCAATGATGACCTTAAGTT
TGTGGAGCGCAGTATTGCGCAAACTGTGGCTGATTTGGGCGAGCAGGACC
GAGTGAGCTATTCGGATCTGCTCCACGACCGCCATATATTCGTGTGCGAC
GAGACTGTCGATGGCGTCAAGCAGTGGTTCCGCGGGCGACTGGTCACCAG
ACCACTGAATCCGGACGAAGAGTCCTTCGATGTCTACTACGTGGACGATG
GACGGCAGCGTAAGGCGCACATCTCTAATATCTACCGCCTGGAGGCAAAC
AACAGAGCTCTGGCTACGTTCCCGCCACAGGCGATACCCGTTCGCCTGCA
CGACGTTCCAGAGATCGGAGGTCATATGCTTCATCGCCTGCGTGGTCTGA
TACCTTGGCGCACCGAAGCTCTCCTGAAGGTTGTGGCCATGGATGGTGGT
AAGCCTCTGGTAAACGTATTCATCCGCGAGGATCCGGAGTCCATGTATAT
GTGCGTGAACATTGGCCTTCGCCTGGAGCTCGAGATGGCTAGCTCCCTAA
ACAACGACATCTGAAAGCTTTCTAGACCAT
BS30946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 2898 | CG8920-PD | 1..2898 | 17..2914 | 14490 | 100 | Plus |
| CG8920-RB | 3669 | CG8920-PB | 1..2880 | 17..2896 | 14400 | 100 | Plus |
| CG8920-RA | 2640 | CG8920-PA | 1..2640 | 275..2914 | 13200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 3272 | CG8920-RD | 177..3075 | 17..2915 | 14495 | 100 | Plus |
| CG8920-RB | 4005 | CG8920-RB | 177..3056 | 17..2896 | 14400 | 100 | Plus |
| CG8920-RA | 3079 | CG8920-RA | 194..2882 | 227..2915 | 13445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20321675..20324224 | 224..2773 | 12750 | 100 | Plus |
| 2R | 25286936 | 2R | 20319813..20320024 | 17..228 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 20324293..20324411 | 2774..2892 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:59:03 has no hits.
BS30946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:24 Download gff for
BS30946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RE | 198..3094 | 17..2913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:31 Download gff for
BS30946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RD | 177..3073 | 17..2913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:53 Download gff for
BS30946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RD | 177..3073 | 17..2913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:53 Download gff for
BS30946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20319813..20320022 | 17..226 | 100 | -> | Plus |
| 2R | 20321678..20324224 | 227..2773 | 100 | -> | Plus |
| 2R | 20324293..20324411 | 2774..2892 | 100 | -> | Plus |
| 2R | 20324498..20324518 | 2893..2913 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:31 Download gff for
BS30946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16212003..16212023 | 2893..2913 | 100 | | Plus |
| arm_2R | 16207318..16207527 | 17..226 | 100 | -> | Plus |
| arm_2R | 16209183..16211729 | 227..2773 | 100 | -> | Plus |
| arm_2R | 16211798..16211916 | 2774..2892 | 100 | -> | Plus |
BS30946.pep Sequence
Translation from 16 to 2913
> BS30946.pep
MEKQEVLEYVAKVVRALITSAKPPVTLRSIVADYMEIEGEPIPFRRLGYS
NDQELLKDSNQFNFHQSGNQVFITAKYNANTEHIVRMVRQQKTSKSTSLS
KPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNHQPDQEIGRAAKCENQAI
AEHKQDLTGIITQELFESFNNIQGPFSENLQVFNKNPEYITRRKKELKKE
DDLDRGQITKEVAREKQKEKETRDRAVTETIFVTIENKKAPVMNGHGPRH
VKVANGQDKHNDGKPPLRAILGNSASQRQQDTSTVYHSPESSFKRPRHPR
VMYPGHQRTTGVSVNHRLKVTPQSDAPTPAVAPITPPASPEYAQTTTAAK
ATYKEDIHGGQGETGNVVTNPKVKVPLKFDPSLDPVSTLNFYCAANDFEK
PAYNIFNKLRNLHCSVQIAGDVYSSYPQEFTDKETAYQRTAQIAIQRIMH
AQSHQKLSACTFSDVEFIDGLYKELLKHPHGILGHKLEDWYGSTFRQHLP
SHWYDLIVKSNKIRVEHGIDPRIILFANDPGSSEPDRTSITTLPQMVLPW
QSSEGGSHDWNMFISFCDSTKIVWARMIDQIANFEELTKHIGRQMESPHF
RQKVSKPYAQEVYLVEMPDGWNRVRAISVDEETRSGRYHFIDFGDVAMFH
SEDLFHCPPQFLALPAQAVCLSMYALDKFEDHPHALQVLTKELDGQTVVA
HVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDTSTAEDIHLNDLVAK
RITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMVLLRNDDLKFVERSI
AQTVADLGEQDRVSYSDLLHDRHIFVCDETVDGVKQWFRGRLVTRPLNPD
EESFDVYYVDDGRQRKAHISNIYRLEANNRALATFPPQAIPVRLHDVPEI
GGHMLHRLRGLIPWRTEALLKVVAMDGGKPLVNVFIREDPESMYMCVNIG
LRLELEMASSLNNDI*
BS30946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-PD | 965 | CG8920-PD | 1..965 | 1..965 | 5091 | 100 | Plus |
| CG8920-PB | 1222 | CG8920-PB | 1..962 | 1..962 | 5068 | 99.8 | Plus |
| CG8920-PA | 879 | CG8920-PA | 1..879 | 87..965 | 4654 | 100 | Plus |
| CG8920-PF | 1136 | CG8920-PF | 1..876 | 87..962 | 4631 | 99.8 | Plus |
