BS30947.complete Sequence
3059 bp assembled on 2012-09-12
GenBank Submission: KX802531
> BS30947.complete
GAAGTTATCAGTCGACATGGTGAAGAAGAAAATAGACAACCGGATACGCG
TGATGATCGAGAATGGGGTCAAGCTGGGCCACCGAACCATGTTCATCGTC
ATCGGGGACAAGGCGCGCGACCAGGTTCCCATTCTTTACGACATCCTGAC
CAAGTCGACGGTCAAGGCGCGACCCACGGTCCTGTGGTGCTACAAGAACA
AGGATGAGGCCATCTCCAATCATGGCAAAAAGCGAGCAAAGAAGATTGCT
GTGGGCAAAGTGGATGTCAATGAGGCGGACCTGTTCGATTCATTTCGAGT
GGCCACCACCATTCACGGCAGATACTACTCCGAGACGCACGCAGTCCTCG
GACGAACCTACGGCGTGTGTGTGCTCCAGGACTTCGAGGCCCTGACCCCC
AATCTTTTGGCTCGAACTGTGGAAACGGTTGAGGGCGGCGGTCTGATCAT
CCTGCTGCTGAAGACACTGCAGTCGCTGAAACAGTTGTACACCATGAGCA
TGGATGTGCACAAGCGATTCCGCACAGAAGCCCATCAGACGGTGACCTGT
CGATTCAATGAGCGACTCATTCTCTCCCTGGCGGACTGCAAGCGCTGTCT
GGTGGTCAACGATGACCTCACCGTGCTGCCACTTAGCTCCAAGACCATCA
ACGTGGAGCCAGTGAATCCCGCAGGCGCCGGTCGATCGCCCAACGAGGCT
AGCCTCAAGGAGCTGAAGGAGAGCCTGCTCACAGTTCAACCAGCAGGAGC
TCTGGTTAATCTCTGCAAGACCTACGATCAGGCCAATGCCGTTGCCCAGT
TCATTGAGGCGCTGGTCGACAAGCAACTGAAGCCGCCCATGTCCTTAACA
GCGGCTCGTGGTCGTGGTAAATCGGCCGCCCTGGGTCTGTCGATTGCCGC
CGCCGTCGCCTTTGGCTATGTGAACATCTACGTTACCTCACCGCATCCGG
AGAACTTAATCACGCTCTTTGAATTTGTGCTCAAGGGCTTCGATGCCTTG
GAGTACCAGGAGCATGCTGACTACACCATTATACGCTCCACCAATGCCGA
CTACAAAAAGGCGATAATAAGAATAAATATTACGAGAAGCAGCAGGCAGA
CCATTCAGTACATAGCTCCCAGCGATACTCATCTGCTGAACGCAGCCGAT
CTTCTGCTGATCGATGAGGCGGCTGCCATTCCTTTGCCGCTGGTAAAGAA
GATGATCGGTCCGTATTTGGTATTCATGGCCAGTACGATAAATGGATACG
AGGGCACTGGCAGATCGCTGAGCTTGAAGCTCATTTCCCAGCTGCAAAAG
GATAACAATGCAAGGCCGCCACTGAAACTGGAGGAATCGATTCGGTATCA
GGAGAACGACGACATAGAAAAGTGGCTGATCAACCTGCTGTGCTTGGATG
CCAGTACGGTGCCGAGTATTAGCTCGGGCTGTCCCACGCCGGATGCTTGT
GAACTGTACTATGTGGACAGGGACGCCCTGTTTTCGTATCACAAGGCTGC
CGAGGCCTTTCTCCATCGCCTGGTCTCCATTTATGTGTCCTCGCACTACA
AGAACACACCAAACGATTTGCAGATGATGAGCGATGCCCCGGCGCATCAT
CTATTCTGTCTACTGGGTCCGGTTCAGCGAATGGACGCCCTGCCAGAGAT
ATTGGTGGTTATCCAAGTGGCACTGGAGGGTCAGATCTCCGCCCAGAGCA
TCAGCGATTCCCTGGGCAGGGGCAAGAAGGCGGCGGGCGATCTGATTCCC
TGGAACGTAGCCGAGCAGTATGGCGATCGAGATTTTCCCAAGCTGTGTGG
CGTTCGCATTGTGAGGGTAGCCACGCATCCGAATTACCAGAGGATGGGCT
ATGGCAAGCGGGCCATTCAGCTGCTCAAGGACTACTATGCAAGGAAGCAC
ACTAATCTGGAGGACGGTCCAGTTGCCAGCAAGGATGCTGGTAAAGGTAT
CGAGGAAGTGGAGGAGGAGGAACTTAGTCTGCTGAAGGAACAAATCCGGC
CACGTAGTCGTATACCCACACTTCTGCAGCGCTTGCACGAACGTGTCCCG
GAACACGTGGACTATATTGGCACATCCTATGGCCTCACCACCGAGCTGCT
GAAGTTCTGGAAGAACGCCGGCTTTGTGCCCGTCTATTTGAGCCAGAAAT
CTAACGAACTGACCGCCGAGCATAGCTGCATTATGCTGCACACGCCCAAT
GCCACGCCCTGGCTGGGCCTGTACTACCAGGACTTCCGCAGGAGAGTCCT
CAAGTTGATGGGAAAGACGTTCAGGGAATTCGAGACGAAACTCTGTTTGG
CCTTGCTGAAGAACAAGTCCGTGGACACGGAAGGTAGTGCACTGAAAGTA
CTCGATAAGCCAATGCTGGATGTTTACTTCTTGCCGCACGATCTGCAGCG
CTTGGAGAGCTACGCCCGCCAGCAGTCCGAGTTTCGTCTAATCATCGATC
TGCTCACGGACATTGCCCAGCTGTATTTTCAGGGCAGGATCGATGGTCTG
CAGCTTGACCTGGTGCAGCAGGGCATCCTTTTGGCTCTGGGCGTGCAGGG
CAAGACTGTGGATGCGTTGGGTCTGGAGCTGAATATGCCGGGTAACCAGT
TGTTGGCGAAATTTTTCGATGCCATGAAACGGTGCAATCAGTGCTTCCGG
TCGGTACTGGAGGAGCATATCGAAGGCGGCATGCTGCGGGAGGCGGATCT
GTCCAAGGGCGAGGAACTGCAACCGCTGACTCTGTCCCTCGACAAGGAGC
TGGATCAAACCGCTCAGAAGCTGAGCAAGCAGCAGCGCAAGGAGCTGAAG
CGCCTGAAGGCCGAGCAGCTGGACGAATTCCAAATCAAGGGCACCGAAGA
GGATTGGTCCAAGGCGCTGGAAACAAACGGAACAGGCGGTGGCAGCGGGC
TGCTCTCCGTCAAGAGTGGCGTAAAGCGACTGGATGGACCAATCGAGACG
CGTGAGGATGGCGACCTGGCAGCTCCGCTGTCCAAGAAGAAAAAGAAGAA
CAATCCGAAACAGAGACGCAGTCAGGGCAAGTCCCTGATCTAGAAGCTTT
CTAGACCAT
BS30947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0020-RA | 3027 | CG1994-PA | 1..3027 | 17..3043 | 15120 | 100 | Plus |
| l(1)G0020-RB | 2904 | CG1994-PB | 1..2900 | 17..2916 | 14485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0020-RA | 3246 | CG1994-RA | 112..3140 | 16..3044 | 15130 | 100 | Plus |
| l(1)G0020-RB | 3250 | CG1994-RB | 112..3144 | 16..3044 | 15055 | 99.8 | Plus |
| CG1785-RA | 1885 | CG1785-RA | 1639..1768 | 3044..2915 | 650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8718115..8719395 | 1948..668 | 6405 | 100 | Minus |
| X | 23542271 | X | 8717087..8718058 | 2916..1945 | 4860 | 100 | Minus |
| X | 23542271 | X | 8719456..8719903 | 667..220 | 2225 | 99.8 | Minus |
| X | 23542271 | X | 8719963..8720166 | 219..16 | 1020 | 100 | Minus |
| X | 23542271 | X | 8716819..8716948 | 3044..2915 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:04:19 has no hits.
BS30947.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-12 10:03:39 Download gff for
BS30947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0020-RA | 79..3105 | 17..3043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:34 Download gff for
BS30947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0020-RA | 113..3139 | 17..3043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:38 Download gff for
BS30947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0020-RA | 113..3139 | 17..3043 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:38 Download gff for
BS30947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8719963..8720165 | 17..219 | 100 | | Minus |
| X | 8716820..8716946 | 2917..3043 | 100 | <- | Minus |
| X | 8717087..8718056 | 1947..2916 | 100 | <- | Minus |
| X | 8718117..8719395 | 668..1946 | 100 | <- | Minus |
| X | 8719456..8719903 | 220..667 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:34 Download gff for
BS30947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8610853..8610979 | 2917..3043 | 100 | <- | Minus |
| arm_X | 8611120..8612089 | 1947..2916 | 100 | <- | Minus |
| arm_X | 8612150..8613428 | 668..1946 | 100 | <- | Minus |
| arm_X | 8613489..8613936 | 220..667 | 99 | <- | Minus |
| arm_X | 8613996..8614198 | 17..219 | 100 | | Minus |
BS30947.pep Sequence
Translation from 16 to 3042
> BS30947.pep
MVKKKIDNRIRVMIENGVKLGHRTMFIVIGDKARDQVPILYDILTKSTVK
ARPTVLWCYKNKDEAISNHGKKRAKKIAVGKVDVNEADLFDSFRVATTIH
GRYYSETHAVLGRTYGVCVLQDFEALTPNLLARTVETVEGGGLIILLLKT
LQSLKQLYTMSMDVHKRFRTEAHQTVTCRFNERLILSLADCKRCLVVNDD
LTVLPLSSKTINVEPVNPAGAGRSPNEASLKELKESLLTVQPAGALVNLC
KTYDQANAVAQFIEALVDKQLKPPMSLTAARGRGKSAALGLSIAAAVAFG
YVNIYVTSPHPENLITLFEFVLKGFDALEYQEHADYTIIRSTNADYKKAI
IRINITRSSRQTIQYIAPSDTHLLNAADLLLIDEAAAIPLPLVKKMIGPY
LVFMASTINGYEGTGRSLSLKLISQLQKDNNARPPLKLEESIRYQENDDI
EKWLINLLCLDASTVPSISSGCPTPDACELYYVDRDALFSYHKAAEAFLH
RLVSIYVSSHYKNTPNDLQMMSDAPAHHLFCLLGPVQRMDALPEILVVIQ
VALEGQISAQSISDSLGRGKKAAGDLIPWNVAEQYGDRDFPKLCGVRIVR
VATHPNYQRMGYGKRAIQLLKDYYARKHTNLEDGPVASKDAGKGIEEVEE
EELSLLKEQIRPRSRIPTLLQRLHERVPEHVDYIGTSYGLTTELLKFWKN
AGFVPVYLSQKSNELTAEHSCIMLHTPNATPWLGLYYQDFRRRVLKLMGK
TFREFETKLCLALLKNKSVDTEGSALKVLDKPMLDVYFLPHDLQRLESYA
RQQSEFRLIIDLLTDIAQLYFQGRIDGLQLDLVQQGILLALGVQGKTVDA
LGLELNMPGNQLLAKFFDAMKRCNQCFRSVLEEHIEGGMLREADLSKGEE
LQPLTLSLDKELDQTAQKLSKQQRKELKRLKAEQLDEFQIKGTEEDWSKA
LETNGTGGGSGLLSVKSGVKRLDGPIETREDGDLAAPLSKKKKKNNPKQR
RSQGKSLI*
BS30947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0020-PA | 1008 | CG1994-PA | 1..1008 | 1..1008 | 5151 | 100 | Plus |
| l(1)G0020-PB | 967 | CG1994-PB | 1..966 | 1..966 | 4939 | 100 | Plus |
