BS30952.complete Sequence
3278 bp assembled on 2012-07-30
GenBank Submission: KX804631
> BS30952.complete
GAAGTTATCAGTCGACATGTTTGGATCCAAGCTGCGCTCCTGGATGGAGA
CGCATATTGTGCGTCCGCGGAAGAAGGGCAGTAAACACAAGCAAGGGACC
GTGGACGCAGGCAGTTCTTGCGTGGGGAAGAAGGCGGGCACCTTACCAAC
ACAGGGCAGCAACCTAACTAGCCCGGTCCTGACCAGTAGCGGAAGCCACA
GCATCGCCAGTCCGGTGCGGAGGCGCGAGGTCTCCCCCATCCAGTGTCAC
CCACCCAGTCGTCGATATGGCTGGCAATCCCCAGATGAAGATTCCTACGT
CATAGCCTCGCCCAAGTCGGACAATTTGCTTCACGCTCCGCACTGCTATC
AGCCGCATCAACCGCTCCAGCAGCCGTCGCACCACTTAAGCGTGCCCAAT
AGCAAGGAAACCTATGCGGAGAAATCGCCCACCAGGGTAAACTGCTCTTC
GTCCTCCATATCGTCGTTGTCCTGGTCAACGGGATCCAAGGAGCCCTCTT
CTGGCAAACAAGCAATTTTTAGAGAGCAGTCCTTAAATGGGGAATACCAC
ATCCCACCTGAGGAGGAGGTGGAGTACGAGGAAGTTGGCGCTTTGCTGCT
TCGGCATGCACCACCCATTGCAGAACAACAGCGCCCGCAGTCAGAAAACT
TAAGTGCCGTGCGTCTAATCTACAAGGAAGAGCCAAGGCAAAGCAAGAAT
CATGTTCGTTACGGTCGCCTGCTTCCCTCCAAGCTAGCACCGGCTCAGCA
TGGCGAGTCACTGGATAATTTGACAGCTACACCGCCTATTCCACCCGCTT
CACTTACCGGCTCGCGTATTCGAACTCCACGAGGAATTCAGCGCAATAAT
TTTATTTCGGGACCCCGGCCACACAGCTTGCCCTCGCCAGAAAGCGCTTA
TTCCACGGGCTACTCCACAGATGGCACATCGCCATGCGCCGCCAGCAACT
ACAATCCACCTGAGTACTACATTAACATGCGCTCGGGAACCCACTATTTC
CCGAAGAGCGTCAACTCGCTGGCCGTCGAGGCCCAGCGGTACAAGTTCGG
CCTTAACCGCATAGAGGAGATGTCGCCTATGGATCCGTTGCCCAAGAGCA
ACTTCGCAACTGCCACTCATGGCCCGGAGTCGTCGCCTAGTTCGCTAGCT
CTGCGGCAGCAGTCAAAGCTCTTTGAGTCTCCCTCGCCGAGACAGCGCTG
TCGTATAAGAACAAATCCCTGGTACAACACGGGAGAGCTCTTGCCTAGCA
CGACAGGCCCCACACGCTTGGATCTGGATGCGACCAGTACTACCTCCACG
ACCTCGTCGGGCATTAAGTCAAGCAATGAACTGGAAGTTCCGGTGGCCAA
AACAATAGCAAACAAAGCAGGGAAGCCAGTCCCTTATGCAGCAACCTCCA
ACTGCAGAGCTACTCCTAGCCAGGCAGCCAAACAGGCTGATATAGACATT
GTTGGGGGAGGGGCTGGTGTTGCACCTGGGGCTGGAGTTGTTTATGAATC
CGAGGGCTCCTCGACTTCGACTGAATTGGAAAATGTGCATGCCCCACATA
CCATTAAGCGGCGTCACTTGGACCACGCCGAGACTACAACAACTTCAGCG
CCCGTGGCAGCTGGTGGTGGAACTGGAGCTACCACTACATCCTTCGTTCT
TAGTGATGACGAGGCCACCCTTAATGAAATGATTGGGAAGTTCGACGAGA
GTTACATTTACGAAAAGGAAACTGATATATTAAGCAGTGATTCAGACCTT
ACGGACTGCTGTGCTTCGGAGCTAGATACTGGACAGGATGCGGGTGATGA
GTGTGACACAGACGAGTTGTTGGACATTGACTTTATAGACACTTCATCCA
TGCAAGAGGTGGAACTTGACCGCAAGGATCTGTCACGAAATCTGGGCAAC
TGTCACTACTATTCTAATCACCCTATCAGTCCGGTGCTCAATCGAAAGGC
ATCAGTCCGTTCCCGACGCAAGAGCGGTCAGGAGACGGGGGAAAGCTCCC
AACAGCGCCGACGCAAGAGGTTCCTTAAAACACGTAAGAAGAGTTGTGAA
AATCGCGAAAAGACTTCTTCGTCACCTCTTCGTGAGCCTCGTGGCACCCG
AAGTGTGGGTGGCACGCCCGTCTGTTTGCGCCGCAATCTACTGGGTCCAA
GTGAGAGAATATACAAAACGTCTCCCCTGTCAAACCGCTCCAACTCGCTA
ATCTTTGGAAGCATAAAAAAAAAGTCAACACTCACCATCGCAGAAAGCGA
AAAAGCACTTCTTAAGGCAGACTTGGAGGCTGATATGAAATATAAACAAC
TAATTATGGAAGCGGAGTCTTTGCTGGAATCGATGAAGAACAGCTTACAG
AGCATTCCCAGAGACACGCCTGTCGCCAGCCCAAGACGAGTGAATCCCTT
AGCTAACAAGCGGGTGGAAATGCTTAAAAACAGTGAAGTGGTGGACTCCA
AAAAACAGACTCTGGTTCTTAACTCTCCTCCTCTTGAGCATGAGTTAGCA
GCAGCCATTAATAAGCGCATAGAGATGCTCAAGTTTGAGACATCGTCTGC
TTCTTCGCCACCAAACAGTCCCAAGCCTGCCCGTTACAGTCCTCGCAAAA
CGCATCTGACCAACTTTATGAATCAAAATGCTCCACCAGAGTTGCCACCA
CGAAAAATAAAAGGCAACCCTCCCTCTGCTCCACTCTCGCCACAACTTCA
GCTAAATGGAAGGAGTATTCAGGAGAGTCCAAAGAGCAAGCGACGCACGA
TGATGGTGACTTCTTCTACCACGACAACGGTGATCAGCTTCAACGGCAGT
GATCCTGAGATGGAGTGCATAGCTGTAGAGGATATTGGCAATCACAACTA
CTTGCCTCAGCCGCAATCGAATACGAGGGATGGAAAATATGGATCGAATA
CGAAAATGGAAAACCCATTGCATGCCGAATTAAATATTAATAACAACTTT
TACTGCCCACACAGCGAGCCCTTAAAGCGCAAGGTATACAAGGGTAGCTC
ATCGTTCGAGCGCATAAAAAAAAACTTCGACTTCGAATTGGATTCAAACG
GACGGTGCAAGTCAAATGAGCGTTCGCAAATTAAGCTTTTGGCCTCCGTG
TCGGCCAAGAGCTCTATGCAAGACGTGACCGTTGACGAGGCCAAGGGCCA
TGCAATAGGCGGTAGTAACCGCAAGCAGCAGCTCATACTGAATACCATTT
TCGATTTAAAGCGCAGCTTGGAGCATCAAAGCCATCAACTGAGTGGATTT
AATGGCGAATAGAAGCTTTCTAGACCAT
BS30952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12851-RD | 3246 | CG12851-PD | 1..3246 | 17..3262 | 16230 | 100 | Plus |
| CG12851-RB | 3246 | CG12851-PB | 1..3246 | 17..3262 | 16230 | 100 | Plus |
| CG12851-RC | 3243 | CG12851-PC | 1..3243 | 17..3262 | 16150 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12851-RD | 6450 | CG12851-RD | 801..4048 | 17..3264 | 16240 | 100 | Plus |
| CG12851-RB | 5254 | CG12851-RB | 801..4048 | 17..3264 | 16240 | 100 | Plus |
| CG12851-RC | 5948 | CG12851-RC | 801..4045 | 17..3264 | 16160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24949924..24950851 | 251..1178 | 4640 | 100 | Plus |
| 2R | 25286936 | 2R | 24952310..24953000 | 2351..3041 | 3455 | 100 | Plus |
| 2R | 25286936 | 2R | 24950955..24951510 | 1179..1734 | 2780 | 100 | Plus |
| 2R | 25286936 | 2R | 24951579..24952003 | 1733..2157 | 2125 | 100 | Plus |
| 2R | 25286936 | 2R | 24949633..24949866 | 17..250 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 24953052..24953275 | 3041..3264 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 24952058..24952254 | 2156..2352 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:59:50 has no hits.
BS30952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:27 Download gff for
BS30952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 805..4044 | 23..3262 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:49 Download gff for
BS30952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 807..4046 | 23..3262 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:10 Download gff for
BS30952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 807..4046 | 23..3262 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:10 Download gff for
BS30952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24949639..24949866 | 23..250 | 100 | -> | Plus |
| 2R | 24949924..24950851 | 251..1178 | 100 | -> | Plus |
| 2R | 24950955..24951510 | 1179..1734 | 100 | -> | Plus |
| 2R | 24951581..24952003 | 1735..2157 | 100 | -> | Plus |
| 2R | 24952060..24952254 | 2158..2352 | 100 | -> | Plus |
| 2R | 24952312..24953000 | 2353..3041 | 100 | -> | Plus |
| 2R | 24953053..24953273 | 3042..3262 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:49 Download gff for
BS30952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20837162..20837389 | 23..250 | 100 | -> | Plus |
| arm_2R | 20837447..20838374 | 251..1178 | 100 | -> | Plus |
| arm_2R | 20838478..20839033 | 1179..1734 | 100 | -> | Plus |
| arm_2R | 20839104..20839526 | 1735..2157 | 100 | -> | Plus |
| arm_2R | 20839583..20839777 | 2158..2352 | 100 | -> | Plus |
| arm_2R | 20839835..20840523 | 2353..3041 | 100 | -> | Plus |
| arm_2R | 20840576..20840796 | 3042..3262 | 100 | | Plus |
BS30952.pep Sequence
Translation from 16 to 3261
> BS30952.pep
MFGSKLRSWMETHIVRPRKKGSKHKQGTVDAGSSCVGKKAGTLPTQGSNL
TSPVLTSSGSHSIASPVRRREVSPIQCHPPSRRYGWQSPDEDSYVIASPK
SDNLLHAPHCYQPHQPLQQPSHHLSVPNSKETYAEKSPTRVNCSSSSISS
LSWSTGSKEPSSGKQAIFREQSLNGEYHIPPEEEVEYEEVGALLLRHAPP
IAEQQRPQSENLSAVRLIYKEEPRQSKNHVRYGRLLPSKLAPAQHGESLD
NLTATPPIPPASLTGSRIRTPRGIQRNNFISGPRPHSLPSPESAYSTGYS
TDGTSPCAASNYNPPEYYINMRSGTHYFPKSVNSLAVEAQRYKFGLNRIE
EMSPMDPLPKSNFATATHGPESSPSSLALRQQSKLFESPSPRQRCRIRTN
PWYNTGELLPSTTGPTRLDLDATSTTSTTSSGIKSSNELEVPVAKTIANK
AGKPVPYAATSNCRATPSQAAKQADIDIVGGGAGVAPGAGVVYESEGSST
STELENVHAPHTIKRRHLDHAETTTTSAPVAAGGGTGATTTSFVLSDDEA
TLNEMIGKFDESYIYEKETDILSSDSDLTDCCASELDTGQDAGDECDTDE
LLDIDFIDTSSMQEVELDRKDLSRNLGNCHYYSNHPISPVLNRKASVRSR
RKSGQETGESSQQRRRKRFLKTRKKSCENREKTSSSPLREPRGTRSVGGT
PVCLRRNLLGPSERIYKTSPLSNRSNSLIFGSIKKKSTLTIAESEKALLK
ADLEADMKYKQLIMEAESLLESMKNSLQSIPRDTPVASPRRVNPLANKRV
EMLKNSEVVDSKKQTLVLNSPPLEHELAAAINKRIEMLKFETSSASSPPN
SPKPARYSPRKTHLTNFMNQNAPPELPPRKIKGNPPSAPLSPQLQLNGRS
IQESPKSKRRTMMVTSSTTTTVISFNGSDPEMECIAVEDIGNHNYLPQPQ
SNTRDGKYGSNTKMENPLHAELNINNNFYCPHSEPLKRKVYKGSSSFERI
KKNFDFELDSNGRCKSNERSQIKLLASVSAKSSMQDVTVDEAKGHAIGGS
NRKQQLILNTIFDLKRSLEHQSHQLSGFNGE*
BS30952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12851-PD | 1081 | CG12851-PD | 1..1081 | 1..1081 | 5613 | 100 | Plus |
| CG12851-PB | 1081 | CG12851-PB | 1..1081 | 1..1081 | 5613 | 100 | Plus |
| CG12851-PC | 1080 | CG12851-PC | 1..1080 | 1..1081 | 5597 | 99.9 | Plus |
