BS30954.complete Sequence
3008 bp assembled on 2012-07-30
GenBank Submission: KX805989
> BS30954.complete
GAAGTTATCAGTCGACATGCTGCCATCCACGGGTCTCTTTAAGGGCTTCT
TGTGCCCTTACTTTGACGGCCAGGATGCGGCGTCCTGCAAGCGCCCCTTT
TGCCACTTTAAGCATGCTCGCAAAGACGAATTGGAGGCCGCTCCACCTGC
AGAACCTTCCCCCGTGCCCAAGTACAAGCCGGCACCCAAGTTGCTCTCCC
TTCCACTGCCCCAGATCACGCTATGTGCGCCCCGGAAGAAGTCCAATCTG
GAGTACCACCCGGAGAAGCCGGCTCTTGACGCATCGCCGGCTAAGAAGAA
GCAGGAGGCGTCCGTGGACAGTGCTCCCAAATATGTGCCCGGCCAGCCAT
CTGTTACAAATGGCGAAGAATATGACGATTGGCAGGCGGTACTCGAAAAG
GAAATTGATGAGCAGATGCAGGTGGAGATTGAGGAGCAAGTCCAGAATAA
CGACGAAGAACAGAAGATAGATACGGTAGCTGAAAACGAGGAGGACCAGG
AGAATACGCAACTGACGGATGCTAGGGATAGCCACGAAAAGGATCGAAAG
CCCAGCAAGGAGCGGGAAAGGGATATAGAAAAGAAGAAGATCAGAGAGCT
GAAAAGGGAAAAGATCAAAGACAGGGATCGGGACCGGGACCGGGACCGGG
AAAAAGACAAAGAGAAGAGCAAGGAAAGGGACAGAGAGAAGGAAAAAAAT
GATAGGGATAAGCGAAAGTCCTCCCACAGCGACAAGGAGCGCTCCAAGGA
GCGAAATACTTCAAGCTCAAGTTCCTCTAAGCACAAGTCTTCATCTAGCT
CCTCTTCCAGCAAAAAGTCATCCAGCAGCGATAAGCACCGCGACGACAAA
AGTTCCAGTAGCAGGCACAAGAGCAGTTCTTCATCATCCTCCTCGAAGAG
CCATCATCACAAATCTAGTTCCTCGAGTTCACGGTCCAAAACTAAGAGGA
GCTCGTCTTCCAGCAAAAGCGCTGGCACTTCAAAGAGCGAACCGGAGGCG
GATAAGGATACTGAAGCAGCTGTACTGACACCAGCAGAACCTATGGATGA
TCTGGATGACATGGACTTTGATTTTGAAGCAGACACCTCGGAAGGAGAAA
TTGTACGCCAGTGTGAAATGATTTTTGACGAGATGGAAAAAAAATTTGCG
CAGATGCACAAGGACGAAGGCGGCAATGCCAACCCGGAGAGTTCTCGCAA
GCGCAAAGCTCCTTCTCCGGACATTGATACCTTCACCGAGGCAGCCACGG
CGGCTCTGCAGAAGCGCCGGGTGGCCCACGAGAATGCTGACAAGATCACG
CCTCATTTGGCTCCTTCGGCGGCGATGCGCAAACCCAATCACGTCCGTAA
TGCCATGCAGGCGATCTTCAACCGCCGCGCGGAGCTGCGGCGCCAGGAGA
AGCTACAAGCCGAAGCCTCAGCGGAGCAGGTACGTCAGGCACAGGAGCGG
GTGCGCCAAGCGCAGGAGGAGCTCCGTCAGGCCAAGGTCAACTCCAACCT
CACGCCACTTATTTCGCGAAGTGCTCTGACCCCACCAGTGCGATCAGCTC
GCAGCATAGCACCTGTGGCCAACATTGTGGCCATCGCTCGGGCCAAAAAA
AAGATCGAGGAGCTGCAGGCCGAGAAGAAGCCAGCCTTTACGCCTGCACA
ATCATTCAAGGGCGCCGGCCGTGTGGCTCACAAGCCCACTGCTGCGCTAG
ACAAAGCGGCTCCTGTGTCCAACGCGGAGAAGCCAACCGTCCTAGATCCC
AGCAGCTCCAAGATATCATACAACGTGCGCATTCAGTATTATGAGATGAT
GGTAAGGCACTGCACCGTCATCTATCCGCAGCTGGCAGATGCCTGGGAGC
GCGCCCAGGTGGAGGAGTTGACCGTCTTTAAGAAGTGCAACACGCCTGCC
ATCTACAAGAACAGCTGCATGCTGGCGATTAACAAGCTCCGCAAGGAGGC
CTTAGAGGCGGGAAACAAGCCGAGCGTAGCCTGCAAGACTGTGTCGCACG
AGATGATGCTGGGCGGCAAGCGGGCGCTCACCACATCCTGGAGCGTAGAG
AAAAAGGGAAAACTGAGCTCCTTGGGCAATGGCGAACCTTTCGATGCTTT
AGACGCCGAGAAAGCTTACAAAATGGTATTCGATCTTCGCCTGACTGAAG
AGCAGCTGGTGGAGAACGGATATCCGCGTCCGGGCGATAAGCGCGGATCC
GCAGTGATACGCGCCTGCCGCCCCAACCGTCGTCCCAACCAGAAAGAGCG
CTACTGTTCCCGCTGCGGCAAGGTATTCAGCTTGGACATATACGAGCACC
AGAGCTTTGACATGTGCAACTACCATCCGAAAAGCACGGGATATCGACGA
GGATTCACGGACCACCAGCATCGCTGCTGCCAGCAGCCGGCGGGCACTCC
AGGCTGCACCTATGCCAACTACCACGTCAGCGACTATTACGATCCGGAAA
AGCTCACCTGTTTCGTGAAGACGATCGAACGGGGTGAGGAATTTGTGCCC
ACTAAGAAGGACATATATGCACTGGATTGCGAGATGTGTTATACCACACA
CGGAATAGAGCTAACCCGCGTTACGGTGGTGGACATAAATGGACGCAGCG
TTTACGATGCTCTTGTCAAGCCGGACAACCAGATTGTGGACTACAATACG
ACCTACTCGGGCATCACGGAGGCGATGCTCTCCAATGAGACGCGTACCAT
ACGCGACGTTCAGGCGGTGCTGATGTCCATGTTCCATGCCAAAACCGTGC
TCGTTGGCCACAGTCTGGAGAGCGATTTGAAGGCACTCAAACTCATTCAC
GACGTTGTGGTGGACACATCGGTGCTGTTTCCCCACAAGATGGGACCGCC
AAAGAAGCGAGCTCTGAAAACACTGTGCATTGAAAACCTAAAGCGGATTA
TACAGGAGAGCGAGGCTGGCCACGACAGTGCCGAGGATGCTGAGGTGTGC
ATTCAGCTCATCAAGTATTATCTGCGCAACAAAATCAGTTGAAAGCTTTC
TAGACCAT
BS30954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12877-RC | 2976 | CG12877-PC | 1..2976 | 17..2992 | 14880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12877-RC | 3250 | CG12877-RC | 111..3086 | 17..2992 | 14880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27707375..27708798 | 124..1547 | 7120 | 100 | Plus |
| 3R | 32079331 | 3R | 27709625..27710219 | 2058..2652 | 2975 | 100 | Plus |
| 3R | 32079331 | 3R | 27708854..27709367 | 1545..2058 | 2570 | 100 | Plus |
| 3R | 32079331 | 3R | 27710277..27710536 | 2653..2912 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 27707210..27707318 | 17..125 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 27710613..27710693 | 2912..2992 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:00:01 has no hits.
BS30954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:27 Download gff for
BS30954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 109..3083 | 17..2991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:53 Download gff for
BS30954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 111..3085 | 17..2991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:13 Download gff for
BS30954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 111..3085 | 17..2991 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:13 Download gff for
BS30954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27710614..27710692 | 2913..2991 | 100 | | Plus |
| 3R | 27707210..27707318 | 17..125 | 100 | -> | Plus |
| 3R | 27707377..27708798 | 126..1547 | 100 | -> | Plus |
| 3R | 27708857..27709367 | 1548..2058 | 100 | -> | Plus |
| 3R | 27709626..27710219 | 2059..2652 | 100 | -> | Plus |
| 3R | 27710277..27710536 | 2653..2912 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:53 Download gff for
BS30954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23536336..23536414 | 2913..2991 | 100 | | Plus |
| arm_3R | 23532932..23533040 | 17..125 | 100 | -> | Plus |
| arm_3R | 23533099..23534520 | 126..1547 | 100 | -> | Plus |
| arm_3R | 23534579..23535089 | 1548..2058 | 100 | -> | Plus |
| arm_3R | 23535348..23535941 | 2059..2652 | 100 | -> | Plus |
| arm_3R | 23535999..23536258 | 2653..2912 | 100 | -> | Plus |
BS30954.pep Sequence
Translation from 16 to 2991
> BS30954.pep
MLPSTGLFKGFLCPYFDGQDAASCKRPFCHFKHARKDELEAAPPAEPSPV
PKYKPAPKLLSLPLPQITLCAPRKKSNLEYHPEKPALDASPAKKKQEASV
DSAPKYVPGQPSVTNGEEYDDWQAVLEKEIDEQMQVEIEEQVQNNDEEQK
IDTVAENEEDQENTQLTDARDSHEKDRKPSKERERDIEKKKIRELKREKI
KDRDRDRDRDREKDKEKSKERDREKEKNDRDKRKSSHSDKERSKERNTSS
SSSSKHKSSSSSSSSKKSSSSDKHRDDKSSSSRHKSSSSSSSSKSHHHKS
SSSSSRSKTKRSSSSSKSAGTSKSEPEADKDTEAAVLTPAEPMDDLDDMD
FDFEADTSEGEIVRQCEMIFDEMEKKFAQMHKDEGGNANPESSRKRKAPS
PDIDTFTEAATAALQKRRVAHENADKITPHLAPSAAMRKPNHVRNAMQAI
FNRRAELRRQEKLQAEASAEQVRQAQERVRQAQEELRQAKVNSNLTPLIS
RSALTPPVRSARSIAPVANIVAIARAKKKIEELQAEKKPAFTPAQSFKGA
GRVAHKPTAALDKAAPVSNAEKPTVLDPSSSKISYNVRIQYYEMMVRHCT
VIYPQLADAWERAQVEELTVFKKCNTPAIYKNSCMLAINKLRKEALEAGN
KPSVACKTVSHEMMLGGKRALTTSWSVEKKGKLSSLGNGEPFDALDAEKA
YKMVFDLRLTEEQLVENGYPRPGDKRGSAVIRACRPNRRPNQKERYCSRC
GKVFSLDIYEHQSFDMCNYHPKSTGYRRGFTDHQHRCCQQPAGTPGCTYA
NYHVSDYYDPEKLTCFVKTIERGEEFVPTKKDIYALDCEMCYTTHGIELT
RVTVVDINGRSVYDALVKPDNQIVDYNTTYSGITEAMLSNETRTIRDVQA
VLMSMFHAKTVLVGHSLESDLKALKLIHDVVVDTSVLFPHKMGPPKKRAL
KTLCIENLKRIIQESEAGHDSAEDAEVCIQLIKYYLRNKIS*
BS30954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12877-PC | 991 | CG12877-PC | 1..991 | 1..991 | 5131 | 100 | Plus |
| CG42666-PK | 742 | CG42666-PK | 484..734 | 747..990 | 436 | 37.8 | Plus |
| CG42666-PI | 742 | CG42666-PI | 484..734 | 747..990 | 436 | 37.8 | Plus |
| CG42666-PH | 742 | CG42666-PH | 484..734 | 747..990 | 436 | 37.8 | Plus |
| CG42666-PG | 742 | CG42666-PG | 484..734 | 747..990 | 436 | 37.8 | Plus |
