BS30958.complete Sequence
2702 bp assembled on 2012-07-30
GenBank Submission: KX800386
> BS30958.complete
GAAGTTATCAGTCGACATGGCAACGCCACAGCCGCAGCCGCAGCTGGAGT
TGGGTTCGTGCCAGGAGGCGCAAACTGAGCCGGCGGTCAGCAAGTTGGTT
TCCCAGTTAGAGCCCCTGACCACAATGGACACCGTGGACGCGGAGCGCGT
CTGCCGCGTGTGCCTAAAGGATGTATCGTTGGAGGGGGAGCTACACTTCA
TCTTCAACGAAACGCCCGTCGAGCAGGACGCAAATCTGGCCCGCATCCTG
GACGAGTGCACCCTGCACCAGTGCGAGCGAAACGACGGCATGCCCCCACA
TATGTGCAGCTCCTGCGTGGAGGCGGCCCGCAACGCCTACCGCTTCAAGC
GGCACGCGGAGCGTTCCTACTGCTCGCTGGTCGCATTGCTGGGCCGGTCG
CCCCAGCTGAAGGCGCGAGGAGCCGAGGCGGCCAGTCAGACGGATCAGGT
GGCCTTGCTGCCATGCGAAATGTGCCACGACCAGTTCCTCAACAGCCTGG
AGCTCAGGCTGCACCGCAACCAGGTGCACAGAACGACCAAGGAGGCCACG
TCGGCTGGCACAGATGGCCTGCCATCCGAGGATTTTAAGTGCAAATTTTG
TCCGCAGCATTTCCCGCATCTCCGACAGCTGCGCAGCCATTTGGCGCGCA
GCCACGAGCAGACCGCACGTCTACAGTGCGCCCATTGCCAACGCACCTTT
AGCCGGCGGGATCATTTGCTGCGCCACATACGCAATCAGCACCGGGATGT
GGAGGAGGATCTTTTGCGCACCTGGCCGCCGGCGGACGAGAATACTATGA
ACAGCGATGGCGGAGATGAGCTGGTCTCTGCGGAGGTGCTGTTAAACGAG
GAGGATAACGAAGATGAAGTCGTTGGGGAAGCCTTTCAGTGCAATACGAA
TCCCATTTCCAGTAACGAAGATGATGGCGAAGAAGCCAATGGGGCCAATC
AAACGCTGTGGCTGCACATCAAGCCGGAACCCTGCCTGGAGGCGGAAGAA
GTCGACCTGGCCATGCAGCTAAAGCTCGAGAAGAAGCGTCGACGGCGGGA
GAAGGCAGAAGCTCAAGCGGAAACTTCCATCGATCGGACTGTGAAGAACG
AACACATTGCCATCGGCGACTCTCAGTTCAGCATTAAGGAAGAGAATCAA
CTTGTGGGCAGCGATGACGAGGCGCCAATGGGAGTGGAAGACTTCATGAA
GCTCCATGTCAGCGGAGAGCTGCCGCTTAGCGATGAGGAGCGGTTCGATG
GTTTTGCAGACGATGACAGTGACCTTGACGATGATGACGACGACGACGAC
GAGGAGGACGCTGGGGATGATGATGACGGAGAATTCCGGTTGAAACAGGA
GCCGCTGGATGGCGAAAAGCCGCTGAAGAAGGCCAAGTCCGGCAGGCGGC
GACGGCGGCGCAACAAGGACGAGCCCAATCCCGATAACCGCTGCGAGGTG
TGCCAGCGCACCTTCTCGCGCCACTGCCACCTGCTGCGCCACAAGCTGTC
GCACCTGGAGAAGAAGCCCCACAACTGCCCGCACTGCCCCAAGGCGTTCG
CGCGCAGCGACCACCTCAAGGCGCATGTGCAGAGCCTACACAGCAACAAG
GAGCACAAGTGTTCGCTCTGTGAGGCCGCCTTCTCGCGCCTGGACGCCTT
GGAGCGTCACAAGGTCAGCAAACACAACGGTGAGGGCCTGGAGCCGGGCA
GCGAACTGAAGCTGCAGCTGGCGGAGCACACTTGTGAGTACTGCTCCAAG
CGCTTCTCCAGTAAGACCTATCTACGCAAGCACACTCTGCTGCACACCGA
CTTCCTTTACGCCTGCAAGACTTGCGACGAGACATTCCGCGAGCGAGCGC
AGCTGAGGGAGCACGAAAAGACCCACACCGGGCAGCGGAACTTCCTGTGC
TGCATCTGCGGCGACAGCTTTGCCCGCAACGACTACCTCCGCGTGCATAT
GCGACGCCACAACGGTGAGAAGCCCTACAAGTGCCGCTTCTGTGTCAAAG
CCTTTCCCCGTGCCACCGATCTCAAGGTCCATGAGCGTTACCACACGGGC
ACCAAACCTAATCTGTGCAATACTTGCGGCAAGAGCTTCCACCGCGCGTA
CAATCTAACGATCCACATGCGCACGCACACCGGCGAGCGGCCGTACAAGT
GCGACCAGTGTCCCAAGAGCTTCACGCAAAGCAACGACCTGAAGGCGCAC
ATCCGGCGGCATACGGGCGAGCGGTACAAGTGTCCGCACTGCGATGCCTA
CTTCCTGCAGTTGTATAATATGCGCAATCACTGCATGAGCGCCCACAACA
AGCACATCGAGACGAAGACGGGACGACTGCAGCGCACGGGTCTGCTAGAC
GATGGCGGTCAGTCGCATTTGACCACCGTCGTTATGCCGCCGGCACGGTA
TCCAAATGAACTCGATCCCCAGCTGGCGGCGACGGCTGCGGCGACTGCAG
CTGGCGGTGCTGAGAGCACATCGTCGACCACCGTCATTCACTCGCCGGGT
ACATACAATGCGACAGCTGCAGCTCCAGCTAATACCTTCGATGGAGCCAA
CTTTACACCCACGGCAGTGAATACGCCTGCTCCGTTTGGCGCCTTTAACT
TTCCGCCGGCCGTTATGGCGCATCTCATGTACAACCAAGGAGGAAGCAGC
CAGCACAGCCAGAGCGGAAGCGATGCGGGCAAATAGAAGCTTTCTAGACC
AT
BS30958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2202-RA | 2670 | CG2202-PA | 1..2670 | 17..2686 | 13350 | 100 | Plus |
| CG11902-RB | 4281 | CG11902-PB | 4027..4136 | 2114..2223 | 190 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2202-RA | 3363 | CG2202-RA | 138..2808 | 16..2686 | 13355 | 100 | Plus |
| CG11902-RB | 4601 | CG11902-RB | 4170..4279 | 2114..2223 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10848894..10849975 | 16..1097 | 5410 | 100 | Plus |
| X | 23542271 | X | 10850034..10850973 | 1098..2037 | 4700 | 100 | Plus |
| X | 23542271 | X | 10851060..10851641 | 2037..2618 | 2910 | 100 | Plus |
| X | 23542271 | X | 10851704..10851772 | 2618..2686 | 345 | 100 | Plus |
| 3R | 32079331 | 3R | 25339657..25339766 | 2114..2223 | 190 | 78.2 | Plus |
Blast to na_te.dros performed 2014-11-28 11:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 4650..4755 | 1413..1518 | 151 | 62.6 | Plus |
BS30958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:24 Download gff for
BS30958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2202-RA | 134..2797 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:34 Download gff for
BS30958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2202-RA | 139..2802 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:58 Download gff for
BS30958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2202-RA | 139..2802 | 17..2680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:58 Download gff for
BS30958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10848895..10849975 | 17..1097 | 100 | -> | Plus |
| X | 10850034..10850973 | 1098..2037 | 100 | -> | Plus |
| X | 10851061..10851641 | 2038..2618 | 100 | -> | Plus |
| X | 10851705..10851766 | 2619..2680 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:34 Download gff for
BS30958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10744067..10745006 | 1098..2037 | 100 | -> | Plus |
| arm_X | 10742928..10744008 | 17..1097 | 100 | -> | Plus |
| arm_X | 10745738..10745799 | 2619..2680 | 100 | | Plus |
| arm_X | 10745094..10745674 | 2038..2618 | 100 | -> | Plus |
BS30958.pep Sequence
Translation from 16 to 2685
> BS30958.pep
MATPQPQPQLELGSCQEAQTEPAVSKLVSQLEPLTTMDTVDAERVCRVCL
KDVSLEGELHFIFNETPVEQDANLARILDECTLHQCERNDGMPPHMCSSC
VEAARNAYRFKRHAERSYCSLVALLGRSPQLKARGAEAASQTDQVALLPC
EMCHDQFLNSLELRLHRNQVHRTTKEATSAGTDGLPSEDFKCKFCPQHFP
HLRQLRSHLARSHEQTARLQCAHCQRTFSRRDHLLRHIRNQHRDVEEDLL
RTWPPADENTMNSDGGDELVSAEVLLNEEDNEDEVVGEAFQCNTNPISSN
EDDGEEANGANQTLWLHIKPEPCLEAEEVDLAMQLKLEKKRRRREKAEAQ
AETSIDRTVKNEHIAIGDSQFSIKEENQLVGSDDEAPMGVEDFMKLHVSG
ELPLSDEERFDGFADDDSDLDDDDDDDDEEDAGDDDDGEFRLKQEPLDGE
KPLKKAKSGRRRRRRNKDEPNPDNRCEVCQRTFSRHCHLLRHKLSHLEKK
PHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCSLCEAAFSRLDALERHKV
SKHNGEGLEPGSELKLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYAC
KTCDETFRERAQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNG
EKPYKCRFCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIH
MRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLY
NMRNHCMSAHNKHIETKTGRLQRTGLLDDGGQSHLTTVVMPPARYPNELD
PQLAATAAATAAGGAESTSSTTVIHSPGTYNATAAAPANTFDGANFTPTA
VNTPAPFGAFNFPPAVMAHLMYNQGGSSQHSQSGSDAGK*
BS30958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2202-PA | 889 | CG2202-PA | 1..889 | 1..889 | 4817 | 100 | Plus |
| crol-PC | 756 | CG14938-PC | 239..655 | 474..887 | 553 | 30.7 | Plus |
| crol-PG | 878 | CG14938-PG | 361..777 | 474..887 | 553 | 30.7 | Plus |
| crol-PI | 962 | CG14938-PI | 445..861 | 474..887 | 553 | 30.7 | Plus |
| crol-PE | 962 | CG14938-PE | 445..861 | 474..887 | 553 | 30.7 | Plus |
| crol-PI | 962 | CG14938-PI | 361..636 | 474..760 | 550 | 34.9 | Plus |
| crol-PI | 962 | CG14938-PI | 334..613 | 475..763 | 538 | 35.2 | Plus |
| crol-PG | 878 | CG14938-PG | 279..552 | 476..760 | 533 | 36.2 | Plus |
| crol-PG | 878 | CG14938-PG | 240..529 | 464..763 | 505 | 33.9 | Plus |
| crol-PC | 756 | CG14938-PC | 183..604 | 474..882 | 499 | 29.6 | Plus |
| crol-PC | 756 | CG14938-PC | 182..430 | 501..760 | 492 | 35.5 | Plus |
| crol-PI | 962 | CG14938-PI | 223..497 | 476..769 | 444 | 32.2 | Plus |
| crol-PG | 878 | CG14938-PG | 223..463 | 476..755 | 442 | 31.9 | Plus |
| crol-PC | 756 | CG14938-PC | 176..313 | 619..755 | 315 | 41.3 | Plus |
| crol-PC | 756 | CG14938-PC | 343..519 | 463..649 | 275 | 30.2 | Plus |
| crol-PG | 878 | CG14938-PG | 465..641 | 463..649 | 275 | 30.2 | Plus |
| crol-PI | 962 | CG14938-PI | 549..725 | 463..649 | 275 | 30.2 | Plus |
