BS30960.complete Sequence
2459 bp assembled on 2012-07-30
GenBank Submission: KX800706
> BS30960.complete
GAAGTTATCAGTCGACATGTTCAGGGTCAGGCCGCTCCTCCCCAGGATAC
GAAGCTCCCTGCAAACGACCTTGAAACTCCAAGCAGATACATCGCAATCC
GAATCCGAATCGTTCCGTCGGAACCTACGACTCCTACACAACAGTTGTCG
TAGTCGCCCTGTGAGCAACCAGAAATTCCGCACAATGGCCACCGGAGGAG
AAGCATCCAAGGAAGTGTCCAAAGAGGAACCCGCCAAGCAGGGCAATCGC
TTGGTTGCCTCGAAGTCGCCATATCTCTTGCAGCATGCCTACAATCCAGT
GGACTGGTACCCGTGGGGCGAGGAGGCTTTCGAGAAGGCCCGCAGCGAGA
ACAAAATCATCTTCTTGTCAGTGGGCTACTCCACCTGTCACTGGTGCCAT
GTAATGGAGCACGAATCGTTTGAGAACCCGGAAACGGCTGCGATTATGAA
CGAAAACTTTGTAAACATCAAGGTGGATCGGGAAGAGCGACCGGACATCG
ATAAGATATACATGCAGTTCCTACTGATGTCCAAGGGCAGTGGTGGTTGG
CCGATGAGTGTGTGGTTAACACCCACTTTGGCTCCACTAGTGGCGGGAAC
TTACTTCCCACCCAAATCCCGCTATGGAATGCCCTCATTTAACACTGTTC
TTAAATCCATTGCTAGGAAGTGGGAAACCGACAAGGAGTCCCTTCTTGCA
ACCGGATCTTCATTGCTCTCTGCTTTACAGAAGAACCAGGACGCTTCGGC
TGTGCCAGAAGCGGCATTTGGAGCGGGAAGTGCTATTGAAAAGCTGAGCG
AAGCCATCAACGTTCATAGGCAGCGATTCGATCAGACCCATGGAGGATTT
GGCTCAGAGCCCAAGTTTCCGGAGGTGCCACGTCTCAACTTTCTTTTCCA
CGGCTATCTCGTCACCAAGGATCCGGATGTTCTGGACATGGTGATTGAAA
CACTGACTCAAATTGGAAAGGGTGGTATACATGACCACATTTTTGGCGGC
TTTGCTCGCTACGCCACCACTCAGGATTGGCACAACGTCCACTTTGAGAA
GATGCTCTATGATCAGGGTCAACTAATGATGGCCTTTGCCAATGCCTACA
AGGTGACCAGGGACGAAATATATTTGCGCTATGCAGATAAAATCCACAAG
TACTTGATTAAGGACCTACGTCATCCTTTAGGGGGATTCTATGCTGGTGA
GGACGCGGACTCCCTGCCTACCCACGAAGATAAAGTAAAGGTAGAGGGAG
CATTCTACGCTTGGACCTGGGACGAAATTCAAGCTGCATTCAAGGATCAG
GCGCAGCGTTTTGACGACATTACGCCCGAGCGGGCTTTTGAAATATATGC
TTACCACTACGGTCTTAAGCCACCGGGTAATGTTCCAGCCTACAGCGATC
CCCATGGTCATCTCACTGGCAAGAACATTCTAATCGTACGAGGATCAGAG
GAGGACACCTGCGCTAACTTTAAGTTGGAGGAGGATCGATTTAAGAAGCT
GCTGGCCACAACCAATGATATATTGCACGTTATCCGGGATAAGCGACCGC
GTCCGCATCTGGACACAAAGATTATATGCGCATGGAACGGTCTGGTGTTG
TCGGGACTCTGCAAGCTAGGCAATTGCTATTCCGCCAACAGGGAGCAGTA
TATGCAGACAGCAAAGGAACTTCTTGATTTCCTTCGCAAGGAAATGTATG
ATCCGGAACAGAAGCTGCTCATCCGTTCGTGCTATGGTGTGGCCGTGGGT
GATGAAACCCTGGAGAAGAATGCATCGCAAATCGATGGGTTCCTTGATGA
CTATGCGTTCCTCATCAAGGGCTTGCTGGACTACTACAAAGCTACACTCG
ACGTAGATGTATTGCATTGGGCAAAGGCGTTGCAGGACACCCAGGACAAG
CTTTTCTGGGACGAGCGAAACGGAGCGTATTTCTTCTCGCAACAGGATGC
ACCCAATGTTATTGTGCGACTCAAGGAAGACCACGATGGAGCCGAACCTT
GTGGAAACAGTGTATCCGCCCACAATCTTGTCCTACTGGCCCACTATTAT
GACGAAAATGCCTATCTCCAGAAGGCCGGGAAACTACTGAATTTCTTTGC
AGACGTATCGCCCTTCGGACACGCTCTGCCAGAGATGTTGTCCGCCCTGC
TGATGCACGAGAACGGGCTGGATCTTGTGGCAGTGGTGGGACCGGATTCG
CCAGACACCCAACGATTTGTGGAAATTTGTCGCAAGTTCTTTATTCCAAG
CATGATCATAGTGCATGTGGATCCCTCGAATCCAGAGGAAGCCTCCAATC
AGCGCTTGCAGACAAAGTTTAAGATGGTGGGCGGTAAAACTACGGTTTAC
ATTTGTCACGAGCGAGCTTGTCGAATGCCAGTTACCGATCCGCAGCAGCT
AGAGGATAACCTAATGGCGTATTTCTTCTCAAAACGTGATTAGAAGCTTT
CTAGACCAT
BS30960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8613-RA | 2427 | CG8613-PA | 1..2427 | 17..2443 | 12135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8613-RA | 2984 | CG8613-RA | 152..2579 | 17..2444 | 12140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14353011..14354478 | 306..1773 | 7340 | 100 | Plus |
| 2R | 25286936 | 2R | 14354802..14355269 | 1977..2444 | 2340 | 100 | Plus |
| 2R | 25286936 | 2R | 14354536..14354741 | 1774..1979 | 1030 | 100 | Plus |
| 2R | 25286936 | 2R | 14352382..14352533 | 17..168 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 14352591..14352734 | 165..308 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:59:24 has no hits.
BS30960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:25 Download gff for
BS30960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8613-RA | 149..2570 | 22..2443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:38 Download gff for
BS30960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8613-RA | 157..2578 | 22..2443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:02 Download gff for
BS30960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8613-RA | 157..2578 | 22..2443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:02 Download gff for
BS30960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14352387..14352533 | 22..168 | 100 | -> | Plus |
| 2R | 14352595..14352732 | 169..306 | 100 | -> | Plus |
| 2R | 14353012..14354478 | 307..1773 | 100 | -> | Plus |
| 2R | 14354536..14354741 | 1774..1979 | 100 | -> | Plus |
| 2R | 14354805..14355268 | 1980..2443 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:38 Download gff for
BS30960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10239892..10240038 | 22..168 | 100 | -> | Plus |
| arm_2R | 10240100..10240237 | 169..306 | 100 | -> | Plus |
| arm_2R | 10240517..10241983 | 307..1773 | 100 | -> | Plus |
| arm_2R | 10242041..10242246 | 1774..1979 | 100 | -> | Plus |
| arm_2R | 10242310..10242773 | 1980..2443 | 100 | | Plus |
BS30960.pep Sequence
Translation from 16 to 2442
> BS30960.pep
MFRVRPLLPRIRSSLQTTLKLQADTSQSESESFRRNLRLLHNSCRSRPVS
NQKFRTMATGGEASKEVSKEEPAKQGNRLVASKSPYLLQHAYNPVDWYPW
GEEAFEKARSENKIIFLSVGYSTCHWCHVMEHESFENPETAAIMNENFVN
IKVDREERPDIDKIYMQFLLMSKGSGGWPMSVWLTPTLAPLVAGTYFPPK
SRYGMPSFNTVLKSIARKWETDKESLLATGSSLLSALQKNQDASAVPEAA
FGAGSAIEKLSEAINVHRQRFDQTHGGFGSEPKFPEVPRLNFLFHGYLVT
KDPDVLDMVIETLTQIGKGGIHDHIFGGFARYATTQDWHNVHFEKMLYDQ
GQLMMAFANAYKVTRDEIYLRYADKIHKYLIKDLRHPLGGFYAGEDADSL
PTHEDKVKVEGAFYAWTWDEIQAAFKDQAQRFDDITPERAFEIYAYHYGL
KPPGNVPAYSDPHGHLTGKNILIVRGSEEDTCANFKLEEDRFKKLLATTN
DILHVIRDKRPRPHLDTKIICAWNGLVLSGLCKLGNCYSANREQYMQTAK
ELLDFLRKEMYDPEQKLLIRSCYGVAVGDETLEKNASQIDGFLDDYAFLI
KGLLDYYKATLDVDVLHWAKALQDTQDKLFWDERNGAYFFSQQDAPNVIV
RLKEDHDGAEPCGNSVSAHNLVLLAHYYDENAYLQKAGKLLNFFADVSPF
GHALPEMLSALLMHENGLDLVAVVGPDSPDTQRFVEICRKFFIPSMIIVH
VDPSNPEEASNQRLQTKFKMVGGKTTVYICHERACRMPVTDPQQLEDNLM
AYFFSKRD*
BS30960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8613-PA | 808 | CG8613-PA | 1..808 | 1..808 | 4302 | 100 | Plus |
