Clone BS30972 Report

Search the DGRC for BS30972

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:309
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptTrs23-RA
Protein status:BS30972.pep: full length peptide match
Sequenced Size:692

Clone Sequence Records

BS30972.complete Sequence

692 bp assembled on 2012-07-12

GenBank Submission: KX804152

> BS30972.complete
GAAGTTATCAGTCGACATGATTATATATGGCGTCTATATAGTTAGTAAAT
CGGGTGGCCTTATATTCAACCTGGACAACAATGTGCCACGCATTGAGCAC
GAGAAGACCTTTACATACCCTCTGGACTTGGTGCTGGACTACGATTCCAA
GAAGGTATCGGTCTCGTTCAACAGAAAGGATGGAATAAATGTGGGCCATG
TCCTGGTGGCGGTCAACGGTATGCCCGTCAATGGAGTCACCCTGGATGAT
GGACGCGATGTGAGGACGACACTGGATGCACCGGAGAACTATCCCATTAA
CCTGAAGTTCAGCCGGCCAAAGATGACCACCAACGAGAAAATCTTTCTGG
CCAGCATGTTCTACCCGCTGTTCGCCATCGCCAGCCAACTGAGTCCGGAG
CCCAAGAGTTCCGGCATCGAGATCCTAGAGGCGGACACTTTCACGCTGCA
CTGCTTCCAAACGCTGACCGGAATCAAGTTCATTATAATCTCGGAAACGG
GTCTCAATGGCATTGATCTGCTGCTGCGAAAGGTTTACGAGCTGTACTCA
GACTACGTGCTCAAGAACCCCTTCTACTCCCTGGAGATGCCCATTCGATG
CGAGCTCTTCGACAACAAGCTCCAAGAGCTCCTCGCCCAGGTCGAGAAGA
CGGGCATTAGCAATATCGATAAATAAAAGCTTTCTAGACCAT

BS30972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Trs23-RA 660 CG9298-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Trs23-RA 765 CG9298-RA 88..748 17..677 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8686549..8687035 191..677 2435 100 Plus
2L 23513712 2L 8686318..8686492 17..191 875 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:42:34 has no hits.

BS30972.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-12 11:18:00 Download gff for BS30972.complete
Subject Subject Range Query Range Percent Splice Strand
Trs23-RA 88..739 17..668 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:29 Download gff for BS30972.complete
Subject Subject Range Query Range Percent Splice Strand
Trs23-RA 88..739 17..668 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:46 Download gff for BS30972.complete
Subject Subject Range Query Range Percent Splice Strand
Trs23-RA 88..739 17..668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:46 Download gff for BS30972.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8686318..8686492 17..191 100 -> Plus
2L 8686550..8687026 192..668 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:29 Download gff for BS30972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8686318..8686492 17..191 100 -> Plus
arm_2L 8686550..8687026 192..668 100   Plus

BS30972.pep Sequence

Translation from 16 to 675

> BS30972.pep
MIIYGVYIVSKSGGLIFNLDNNVPRIEHEKTFTYPLDLVLDYDSKKVSVS
FNRKDGINVGHVLVAVNGMPVNGVTLDDGRDVRTTLDAPENYPINLKFSR
PKMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEILEADTFTLHCFQTL
TGIKFIIISETGLNGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDN
KLQELLAQVEKTGISNIDK*

BS30972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
Trs23-PA 219 CG9298-PA 1..219 1..219 1124 100 Plus