BS30973.complete Sequence
4577 bp assembled on 2012-07-30
GenBank Submission: KX805694
> BS30973.complete
GAAGTTATCAGTCGACATGATCTACTATATGCTACTCATACTGCCCGTGG
TCCTGGCCCAGGATCAGCAGCACACCACGGAATCGCTGTCCACCAAGCAC
CACCAGCAGCAGCAGCTGTCGCACTCGAATGCGATAATGGGTGAGGCTGG
GGTCTCCAACTCGCAGCTAATGCAGCCCTCGACTCCGGCGCGAACCCTGC
GACCCTTGACCGCGGGCGCGGGTGGTGACCCTTCGCTGTATGACGCCCCC
GACGACTGTCACTTCATGCCAGCAGCGGGTCTGGATCAGCCGGAAATAGC
CTTAACGTGCAACCTGCGCACGGTGAACAGCGAGTTTGACACAACCAATT
TCAGTGTTATACCCGCCGAGCACACGATTGCCCTGCACATACTGTGCAAT
GACGAAATCATGGCCAAGAGTCGCCTGGAGGCGCAATCTTTCGCCCATCT
GGTTAGGCTCCAGCAGCTGTCCATCCAGTATTGCAAGCTGGGGCGACTGG
GTCGCCAGGTTCTGGATGGTCTGGAGCAGCTGAGGAACCTGACGCTCCGG
ACGCACAACATCCTGTGGCCAGCGCTGAATTTCGAGATAGAAGCGGATGC
CTTCTCGGTCACTCGGAGGTTGGAGAGACTGGACCTCAGTTCGAACAACA
TCTGGTCCCTGCCGGATAACATATTCTGCACCCTGTCCGAGTTGTCTGCC
CTGAACATGAGCGAGAATCGCCTGCAGGACGTCAACGAGCTGGGCTTCAG
GGATCGCAGCAAGGAGCCAACCAATGGTTCCACCGAATCCACCTCCACCA
CCGAATCGGCCAAAAAGAGCAGTAGCTCAAGCACCAGTTGTTCGCTGGAC
CTGGAGTACCTGGATGTGAGCCACAATGATTTCGTCGTGCTGCCAGCAAA
TGGATTTGGCACTCTGAGGAGGCTGCGAGTCCTTTCGGTCAACAACAATG
GCATCTCCATGATTGCGGACAAGGCTCTCAGTGGACTGAAGAACCTGCAG
ATCCTGAACCTGAGCTCCAACAAAATCGTGGCCTTGCCCACAGAACTCTT
CGCTGAGCAAGCCAAGATTATCCAAGAGGTGTACCTGCAGAATAATTCCA
TAAGTGTGCTGAATCCGCAGCTCTTCTCGAATCTGGACCAGCTGCAGGCC
CTGGACCTGTCCATGAACCAGATAACCTCCACCTGGATCGATAAGAACAC
CTTTGTGGGTCTGATTCGTCTGGTTCTGCTTAATTTGTCGCACAACAAGT
TGACCAAACTGGAGCCAGAGATCTTCAGCGACTTGTACACCCTGCAGATT
CTTAATCTGCGTCACAATCAGCTGGAGAACATCGCAGCCGACACTTTTGC
CCCGATGAATAATCTGCACACGCTGCTGCTGTCGCACAACAAACTGAAGT
ATCTGGATGCATATGCTCTGAACGGATTGTATGTACTGTCGCTGCTCTCG
CTGGACAATAATGCGCTGATTGGCGTGCATCCGGATGCCTTCCGGAACTG
CAGTGCCCTGCAGGACCTCAACTTGAATGGCAATCAGCTGAAGACAGTTC
CGCTGGCCCTGAGGAATATGCGCCATTTGAGAACCGTGGATCTGGGCGAG
AACATGATTACCGTTATGGAGGATAGTGCGTTTAAAGGTCTGGGAAATCT
CTATGGTCTCCGCTTGATTGGCAACTACCTGGAGAATATTACGATGCACA
CCTTCAGGGATCTGCCTAATTTGCAAATCCTGAATCTCGCCAGAAACCGC
ATAGCAGTTGTGGAACCGGGGGCCTTTGAGATGACCTCGAGCATTCAAGC
TGTGCGTTTGGATGGCAATGAGCTGAATGACATCAATGGCCTCTTCAGCA
ACATGCCCTCCCTTCTGTGGCTGAATATATCCGATAATCGTTTGGAATCC
TTTGATTATGGACATGTGCCATCCACCCTGCAGTGGCTGGACCTCCATAA
GAATCGGTTGAGTTCCTTATCAAATCGTTTTGGTTTGGATAGTGAGCTAA
AACTACAAACTCTCGATGTGAGCTTTAATCAACTTCAGCGCATTGGACCC
AGTTCCATACCAAACTCTATCGAACTGCTGTTCCTGAACGACAACCTGAT
AACCACCGTTGATCCAGATACCTTTATGCACAAAACCAATCTGACCCGGG
TGGATCTCTATGCGAACCAAATCACAACGCTGGACATCAAGTCCTTGAGG
ATTCTGCCAGTTTGGGAACATCGAGCTCTGCCAGAGTTCTATATTGGTGG
AAATCCCTTCACCTGCGATTGTAACATTGATTGGCTGCAGAAGATTAACC
ATATAACATCGAGGCAATATCCAAGGATTATGGATCTGGAGACCATATAC
TGCAAGTTGCTGAACAACAGGGAGAGGGCCTATATTCCCCTGATCGAAGC
TGAACCCAAGCACTTTTTGTGCACCTACAAGACCCATTGCTTCGCCGTTT
GCCATTGCTGTGAGTTCGATGCTTGTGATTGCGAGATGACCTGCCCCACG
AATTGCACGTGCTTCCATGACCAAACCTGGTCCACAAATATTGTGGAGTG
CTCGGGCGCAGCTTATTCTGAGATGCCGAGACGTGTGCCCATGGATACCT
CTGAGTTGTATATCGATGGCAACAACTTTGTTGAATTGGCGGGACATTCG
TTCCTTGGTCGCAAGAACTTGGCTGTTCTCTATGCGAACAACTCGAACGT
GGCCCACATATACAACACCACTTTCAGTGGCCTTAAACGCCTGTTGATCC
TGCACTTGGAGGATAATCATATAATCAGTCTGGAGGGCAACGAGTTCCAC
AATCTGGAGAACCTGAGGGAGCTATATCTGCAATCAAACAAAATAGCCAG
CATCGCCAATGGGAGTTTCCAGATGCTGAGGAAACTGGAGGTCCTGCGAT
TGGATGGCAATCGATTGATGCACTTCGAGGTGTGGCAACTAAGTGCCAAT
CCCTACCTGGTGGAGATCAGCTTGGCCGACAACCAGTGGAGCTGTGAGTG
TGGTTACCTGGCCAGGTTCAGAAACTACCTGGGTCAGAGCTCGGAGAAGA
TCATAGATGCCTCCAGGGTGAGCTGCATCTACAACAATGCTACGAGTGTT
CTGAGGGAGAAGAACGGTACCAAGTGCACTTTGCGAGATGGTGTAGCCCA
CTATATGCACACCAACGAGATCGAGGGACTGCTGCCCCTGCTCCTGGTGG
CCACCTGTGCCTTTGTGGCCTTTTTCGGTCTGATTTTCGGACTCTTCTGC
TATCGCCATGAGCTGAAGATATGGGCCCACTCCACCAACTGTCTAATGAA
CTTCTGCTACAAGTCACCCCGATTCGTTGACCAGCTGGACAAAGAGCGTC
CCAATGATGCCTACTTCGCCTACAGCCTGCAGGACGAGCACTTCGTCAAC
CAGATCCTGGCCCAGACGCTGGAAAACGACATCGGCTATCGACTGTGCCT
GCACTACCGCGATGTAAACATCAATGCCTACATCACGGATGCCCTCATCG
AAGCCGCCGAAAGTGCCAAACAGTTTGTGCTCGTGCTGTCCAAGAACTTC
CTGTACAACGAGTGGAGTCGCTTCGAGTACAAGAGTGCTCTCCACGAGCT
GGTGAAGCGCAGGAAGCGGGTGGTCTTCATCCTGTATGGAGATCTGCCCC
AGCGCGACATTGACATGGACATGCGGCACTATCTGCGTACCAGCACCTGC
ATCGAGTGGGACGACAAGAAGTTTTGGCAAAAGCTGCGCCTGGCCTTGCC
CCTGCCAAATGGTCGTGGCAACAACAACAAGCGAGTGGTATCCGGCTGCC
TATCGGGACGCACTCCCTCCGTGAATATGTACGCCACAAGTCATGAGTAT
CAGGCCGGCAATGGTGGGGTGATACCGCCACCCAGTGCCCGCTACGCGGA
CTGTGGCAGCAACAATTACGCGACCATCAACGAGTGTGCTGCAGCTGGAG
GAGGTCGTGGGTACAAGCCCATACCCACTTCAGCCTCGGCGGCGGCAGCA
GCTTGTAAATTTAACACCATGAACCAGCTGTCCAAGAAGCAGCAACGGGA
TCTCAGTGTGGCCGGTATGGCCAAGACCCTGGAGCATCAGCACCACCACA
ACCACCAAGCGAATCGCAGGAGCCAGCACGAGTACGCGGTGCCCAGCTAT
CTGCCCAGTGCTGCTCCGGCCTACGACAGTGTGGACTACGCCAAGCAGCA
GATCCGGAACAATGCCAACTGCGAGTGTGTTAACCTGGGCACGGCCAAGA
GGGCTGCTGGAAAAAATCCCGCCTCGGGATTGCCATCCAGCTTTAGCTCG
AACTTTGTGCCACCCGGTGGTGCCTCGTACAACTGCAAGAAATCCTGCAG
TTGCATTGGAGACGATGAGCTGCTCTGCAGCTGTGGCGGAGGTGGCGGCA
TTGGGGTCAATCTCCTCGAGAGTGGCACCCAGAGCAGCGTGACCATGAGC
AGCAGCAGCAACAACAGCCGACAGCCGGAACTCACCCACTACGAGTCCAA
CTTGAGCCTGAACGACGACGAAGACGAGGATCACGATCAGCAGAAGAACC
TGTGGGCGTAAAAGCTTTCTAGACCAT
BS30973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Toll-6-RC | 4545 | CG7250-PC | 1..4545 | 17..4561 | 22725 | 100 | Plus |
| Toll-6-RB | 4545 | CG7250-PB | 1..4545 | 17..4561 | 22725 | 100 | Plus |
| Toll-6-RA | 4545 | CG7250-PA | 1..4545 | 17..4561 | 22725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Toll-6-RC | 7624 | CG7250-RC | 534..5078 | 17..4561 | 22725 | 100 | Plus |
| Toll-6-RB | 5746 | CG7250-RB | 534..5078 | 17..4561 | 22725 | 100 | Plus |
| Toll-6-RA | 5517 | CG7250-RA | 534..5078 | 17..4561 | 22725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15337225..15341769 | 17..4561 | 22725 | 100 | Plus |
| 2R | 25286936 | 2R | 19829223..19829342 | 2425..2544 | 255 | 80.8 | Plus |
Blast to na_te.dros performed 2014-11-28 12:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6957 | 4425..4557 | 183 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6857 | 4425..4550 | 152 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1532..1612 | 4425..4501 | 151 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6922 | 4421..4543 | 143 | 62.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1164 | 4417..4502 | 142 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6845 | 4433..4549 | 139 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2432 | 4425..4527 | 136 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6891 | 4433..4542 | 131 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 4429..4549 | 128 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2429 | 4417..4521 | 127 | 60.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1097 | 4430..4481 | 124 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6889 | 4425..4552 | 121 | 57.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1107..1170 | 4421..4484 | 121 | 69.2 | Plus |
BS30973.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:31 Download gff for
BS30973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Toll-6-RA | 526..5068 | 17..4559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:15 Download gff for
BS30973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Toll-6-RA | 534..5076 | 17..4559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:31 Download gff for
BS30973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Toll-6-RA | 534..5076 | 17..4559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:31 Download gff for
BS30973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15337225..15341767 | 17..4559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:15 Download gff for
BS30973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15330325..15334867 | 17..4559 | 100 | | Plus |
BS30973.pep Sequence
Translation from 16 to 4560
> BS30973.pep
MIYYMLLILPVVLAQDQQHTTESLSTKHHQQQQLSHSNAIMGEAGVSNSQ
LMQPSTPARTLRPLTAGAGGDPSLYDAPDDCHFMPAAGLDQPEIALTCNL
RTVNSEFDTTNFSVIPAEHTIALHILCNDEIMAKSRLEAQSFAHLVRLQQ
LSIQYCKLGRLGRQVLDGLEQLRNLTLRTHNILWPALNFEIEADAFSVTR
RLERLDLSSNNIWSLPDNIFCTLSELSALNMSENRLQDVNELGFRDRSKE
PTNGSTESTSTTESAKKSSSSSTSCSLDLEYLDVSHNDFVVLPANGFGTL
RRLRVLSVNNNGISMIADKALSGLKNLQILNLSSNKIVALPTELFAEQAK
IIQEVYLQNNSISVLNPQLFSNLDQLQALDLSMNQITSTWIDKNTFVGLI
RLVLLNLSHNKLTKLEPEIFSDLYTLQILNLRHNQLENIAADTFAPMNNL
HTLLLSHNKLKYLDAYALNGLYVLSLLSLDNNALIGVHPDAFRNCSALQD
LNLNGNQLKTVPLALRNMRHLRTVDLGENMITVMEDSAFKGLGNLYGLRL
IGNYLENITMHTFRDLPNLQILNLARNRIAVVEPGAFEMTSSIQAVRLDG
NELNDINGLFSNMPSLLWLNISDNRLESFDYGHVPSTLQWLDLHKNRLSS
LSNRFGLDSELKLQTLDVSFNQLQRIGPSSIPNSIELLFLNDNLITTVDP
DTFMHKTNLTRVDLYANQITTLDIKSLRILPVWEHRALPEFYIGGNPFTC
DCNIDWLQKINHITSRQYPRIMDLETIYCKLLNNRERAYIPLIEAEPKHF
LCTYKTHCFAVCHCCEFDACDCEMTCPTNCTCFHDQTWSTNIVECSGAAY
SEMPRRVPMDTSELYIDGNNFVELAGHSFLGRKNLAVLYANNSNVAHIYN
TTFSGLKRLLILHLEDNHIISLEGNEFHNLENLRELYLQSNKIASIANGS
FQMLRKLEVLRLDGNRLMHFEVWQLSANPYLVEISLADNQWSCECGYLAR
FRNYLGQSSEKIIDASRVSCIYNNATSVLREKNGTKCTLRDGVAHYMHTN
EIEGLLPLLLVATCAFVAFFGLIFGLFCYRHELKIWAHSTNCLMNFCYKS
PRFVDQLDKERPNDAYFAYSLQDEHFVNQILAQTLENDIGYRLCLHYRDV
NINAYITDALIEAAESAKQFVLVLSKNFLYNEWSRFEYKSALHELVKRRK
RVVFILYGDLPQRDIDMDMRHYLRTSTCIEWDDKKFWQKLRLALPLPNGR
GNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIPPPSARYADCGSNN
YATINECAAAGGGRGYKPIPTSASAAAAACKFNTMNQLSKKQQRDLSVAG
MAKTLEHQHHHNHQANRRSQHEYAVPSYLPSAAPAYDSVDYAKQQIRNNA
NCECVNLGTAKRAAGKNPASGLPSSFSSNFVPPGGASYNCKKSCSCIGDD
ELLCSCGGGGGIGVNLLESGTQSSVTMSSSSNNSRQPELTHYESNLSLND
DEDEDHDQQKNLWA*
BS30973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Toll-6-PC | 1514 | CG7250-PC | 1..1514 | 1..1514 | 7950 | 100 | Plus |
| Toll-6-PB | 1514 | CG7250-PB | 1..1514 | 1..1514 | 7950 | 100 | Plus |
| Toll-6-PA | 1514 | CG7250-PA | 1..1514 | 1..1514 | 7950 | 100 | Plus |
| Tollo-PA | 1346 | CG6890-PA | 18..1210 | 63..1245 | 2645 | 43.5 | Plus |
| Toll-7-PA | 1446 | CG8595-PA | 105..1351 | 117..1374 | 2372 | 40.4 | Plus |
