BS31017.complete Sequence
2768 bp assembled on 2012-07-30
GenBank Submission: KX803050
> BS31017.complete
GAAGTTATCAGTCGACATGGAGCTGAGCAACTTTTCGAGCGGCAAGAAGA
TGTCACGCGAGGAGCGCCGCTACTCGGTGCCCCACGGACCCAATACCCCA
CTGCCACCGGCGGCATCCGAGGATCTGCATGCCTGGTCCATCTACAGGCA
AAACCTGAACTCTGACTTCACCGATTCAGCTCTGGGCTCGTCGGACAAAT
CACCGCTGCCATATGGAAACTTCCAGCTACGCGATACCACAGTTCAATCA
ATCTTAAACCATCCGCGCTACGGACCCAAATCTCCCTTGGGCTCAAATAT
GTACACATACTTGAAGTTCGGACTGCCGCGCGTCTTTCCGCCAAATGCTG
GATCGCAGCGATCGCATCGTCCCGGTCCGGGTCCGGGTGCGGGACCGGGT
CATGGCCATGGTGGTTCCAGTGCCCTGGGCGGAGTGCGAGGACGAGTGAA
CCGCGCCTTTCGGGATAGCTCGGGTGCACCGGCTGGAGCCGGGAGCAGTG
GCTACGATAGCAGCGACAACGAGACGACCCGCAGTCGGGTGCCGCCCAAT
CTCCGGAAGTATCGCAGCGAGTCCGACTTCCGTGCCATCGGCGGCATGCC
GCACTCGCGTCCTGAGTCGCGGGCTCAGATCGGAGGAGGCGGTGTCCCGA
TGGCTGCCCTGCGGCAGGCAAACAGCCGAGCAAGCATCGCGGTGGGTCAG
CACCACCATCAGATGCAGCAGCATCAACAGCAGTACGGGAAGCACTACGG
TCACAGATCGCACAGCGAGGCGGATCTTCTGGGGGCCGGATTGAGCCAGG
TGGATGGCGGCGGTGGTGGGATGGGCTACGACTATAACGAAGCCCGACTG
TACGGCAGCTCCAGGCAGTACGGCAATGGAAACGGTCACAACCCTGGCAG
CAGGAAGCAGTCGGGCATGGGGCTGATCTACCCAAACATCCAGGTGCACT
GCCTCGATGTGAATCCCTGCCTGCGCGGTGTGTCGATGCAGGCCAAGGCG
GGGGATCTGTTCGCCATCATGGCCACATCGCAGAGGGAGGGAAGTGCCCT
GGCCGAGTGCTTGGCGGGATTGACTGAACGTCTGGGTGGGGAGATCCTCA
TCAACGGACAGCAGGTTAGTCGACGTGGACTGCGGGAACTCTGCAGCTAT
GTACCGGCTCTCGAGGTCTCCTCCCTGGATCCACGGATGAGTGTCCAGTG
CACCCTCAATTTCCATGCCGCGCTCAGAGGTCCCATTGATCGCAGTGATC
TGGAGGAGCGCATGGATGTGCTCATCGAGGATTTGGGGCTGAATACGGTG
CGTGCCTCCAATGTGTCCACATTGACCCACTCGGAGAAACAGCGCTTAAG
CGTGGCCTGCCAGCTGCTGGCGCAGTCGTCGCTGCTGATTCTGGATCAGG
TGACCAGCAACATGGATATCTTTGACACATTCTTCCTGGTGGAGTACCTG
CGCCAGTGGTGCAGCGGTGGTCGCATTGTGATCATGACGCTTCAGCCTCC
CACCTTTGAGATTCTATCCATGTGTTCCGGCGTTCTGCTGCTCTCCGGCG
GAAGGACCGTCTTCTCCGGCAGTCGAGCGGATCTACCACGACACATGGGC
GAGCTGGGCTATCCATGTCCGCCATTCAAGAACCCAGCGGACTATTACTT
GGATTTGGTCACCCTGGATGACCTTTCAGCGGCCGCCATGCTGGAGTCCT
CGGCCCGCATTGAATCGCTGGCCAACGCCTGGGATCAGATTAACTCGGAG
CCCCCATTAGCTGCACCGCCCGCCTCATTGCCCAATTTCACAATGAAGGC
TGGCTTCTTTGGTCAGATCAGCGCCCTGATCAAAAGATTTGCCGGCTACA
AGCAGCCGGGATCACTGCTCACCTGGATCAGCAAGCTGATCGCCGCCGCA
GTCCTCTCCCTTTTCATTGGCTGCATCTTCTGGGATGTACCCGCTTCCGA
TCCACAGCTGAGCTACCACGATCGCTTGGGATACCATCATTGCGTCATGG
TGCTAGTCTACTGGCCACTGGTCATGCTCACCATTCGCGACACGCAGGAG
GATCGCCGCCATGCGGAGCGAGACATACGCCTGGGACTCTATACGCGCAG
TCTTTATATCATTGTACAGAGTCTCCTGGGCCTGTTTCCCAGCCTCTGCA
TCTGGCTCGCCTACTTGCTTCCTGCCCACAGCATGGCGGGACTTTACACA
TATTCCAACAGCAGCGATACGGGCATATACCTGTATATGGGCTACATGCT
GCTCTACTTGACGCTCATTCAGACATTGGCACTGTTCTGTGCCCACCTGC
TGCCCTGCAAGGTCTCGGCGAGCATTGTCAACGGGCTCATCAGCCTGGCA
GTGGCGGCAGTGGGTGGCTACCTGGTGCATCCCCAGAACCTGGCCCAGTT
CTGGTCCTGGTTGCAATTCGTTTCGCCAGAACGTTGGCTGCTGCCCGTTC
TGGTGCAGGATGAGTACAGTGCCGAGACGTTGTCTAACTCCGCAGGACTG
CAGTTGTGCCGAAATAAGCAGGTGCAGCACCAGGAGATTATTGTGCAACA
GCCCTGCCCGCCGCCCAACGGCACCCAAGTGCTAGTCGACTTCGAGCTGC
TGCCCCAGCAGCACGTGCTGGATCCCACGCCCACCTATGACCAGACCACC
TCGGTGGCTTTGGTTCTGGGTTCGGTGCTCGTCTTTTGCGTCACCTTCAT
CGTCTTTTTGTGCAATTGTCGCGGCGCCTGTCGAAGGAAGCGTAGCCGTT
AGAAGCTTTCTAGACCAT
BS31017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31121-RB | 2736 | CG31121-PB | 1..2736 | 17..2752 | 13680 | 100 | Plus |
| CG31121-RA | 2736 | CG31121-PA | 1..2736 | 17..2752 | 13680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31121-RB | 3136 | CG31121-RB | 264..3000 | 16..2752 | 13685 | 100 | Plus |
| CG31121-RA | 3296 | CG31121-RA | 424..3160 | 16..2752 | 13685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24882983..24884352 | 1649..280 | 6850 | 100 | Minus |
| 3R | 32079331 | 3R | 24882457..24882926 | 2119..1650 | 2350 | 100 | Minus |
| 3R | 32079331 | 3R | 24881904..24882187 | 2523..2240 | 1420 | 100 | Minus |
| 3R | 32079331 | 3R | 24881602..24881835 | 2752..2519 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 24884561..24884694 | 279..146 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 24885007..24885139 | 148..16 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 24882247..24882370 | 2241..2118 | 620 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 649..751 | 744..635 | 155 | 67 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1110 | 698..735 | 127 | 81.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2420 | 698..768 | 122 | 68.5 | Plus |
BS31017.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:20 Download gff for
BS31017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31121-RB | 265..3000 | 17..2752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:12 Download gff for
BS31017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31121-RA | 425..3160 | 17..2752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:36 Download gff for
BS31017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31121-RA | 425..3160 | 17..2752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:36 Download gff for
BS31017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24881906..24882186 | 2241..2521 | 100 | <- | Minus |
| 3R | 24882248..24882368 | 2120..2240 | 100 | <- | Minus |
| 3R | 24881602..24881832 | 2522..2752 | 100 | <- | Minus |
| 3R | 24882457..24882926 | 1650..2119 | 100 | <- | Minus |
| 3R | 24882983..24884352 | 280..1649 | 100 | <- | Minus |
| 3R | 24884561..24884692 | 148..279 | 100 | <- | Minus |
| 3R | 24885008..24885138 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:12 Download gff for
BS31017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20707628..20707908 | 2241..2521 | 100 | <- | Minus |
| arm_3R | 20707970..20708090 | 2120..2240 | 100 | <- | Minus |
| arm_3R | 20707324..20707554 | 2522..2752 | 100 | <- | Minus |
| arm_3R | 20708179..20708648 | 1650..2119 | 100 | <- | Minus |
| arm_3R | 20708705..20710074 | 280..1649 | 100 | <- | Minus |
| arm_3R | 20710283..20710414 | 148..279 | 100 | <- | Minus |
| arm_3R | 20710730..20710860 | 17..147 | 100 | | Minus |
BS31017.pep Sequence
Translation from 16 to 2751
> BS31017.pep
MELSNFSSGKKMSREERRYSVPHGPNTPLPPAASEDLHAWSIYRQNLNSD
FTDSALGSSDKSPLPYGNFQLRDTTVQSILNHPRYGPKSPLGSNMYTYLK
FGLPRVFPPNAGSQRSHRPGPGPGAGPGHGHGGSSALGGVRGRVNRAFRD
SSGAPAGAGSSGYDSSDNETTRSRVPPNLRKYRSESDFRAIGGMPHSRPE
SRAQIGGGGVPMAALRQANSRASIAVGQHHHQMQQHQQQYGKHYGHRSHS
EADLLGAGLSQVDGGGGGMGYDYNEARLYGSSRQYGNGNGHNPGSRKQSG
MGLIYPNIQVHCLDVNPCLRGVSMQAKAGDLFAIMATSQREGSALAECLA
GLTERLGGEILINGQQVSRRGLRELCSYVPALEVSSLDPRMSVQCTLNFH
AALRGPIDRSDLEERMDVLIEDLGLNTVRASNVSTLTHSEKQRLSVACQL
LAQSSLLILDQVTSNMDIFDTFFLVEYLRQWCSGGRIVIMTLQPPTFEIL
SMCSGVLLLSGGRTVFSGSRADLPRHMGELGYPCPPFKNPADYYLDLVTL
DDLSAAAMLESSARIESLANAWDQINSEPPLAAPPASLPNFTMKAGFFGQ
ISALIKRFAGYKQPGSLLTWISKLIAAAVLSLFIGCIFWDVPASDPQLSY
HDRLGYHHCVMVLVYWPLVMLTIRDTQEDRRHAERDIRLGLYTRSLYIIV
QSLLGLFPSLCIWLAYLLPAHSMAGLYTYSNSSDTGIYLYMGYMLLYLTL
IQTLALFCAHLLPCKVSASIVNGLISLAVAAVGGYLVHPQNLAQFWSWLQ
FVSPERWLLPVLVQDEYSAETLSNSAGLQLCRNKQVQHQEIIVQQPCPPP
NGTQVLVDFELLPQQHVLDPTPTYDQTTSVALVLGSVLVFCVTFIVFLCN
CRGACRRKRSR*
BS31017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31121-PB | 911 | CG31121-PB | 1..911 | 1..911 | 4794 | 100 | Plus |
| CG31121-PA | 911 | CG31121-PA | 1..911 | 1..911 | 4794 | 100 | Plus |
| w-PA | 687 | CG2759-PA | 113..608 | 319..803 | 308 | 25.2 | Plus |
| CG11069-PA | 604 | CG11069-PA | 37..337 | 319..635 | 279 | 26.6 | Plus |
| CG31689-PG | 615 | CG31689-PG | 36..263 | 319..551 | 272 | 30 | Plus |
