BS31021.complete Sequence
4934 bp assembled on 2012-09-25
GenBank Submission: KX802225
> BS31021.complete
GAAGTTATCAGTCGACATGGAGGACATTGAATATTTAGACGAGTACAAAG
ACTTGGTGCTGCCAGGGATTAAATCGAGTGCTCCGACAGCATCTTCTGCC
GGCGTTCCGCGGCAGCGGCGCATTTCATCAGACTCGAGCAACTCGTCGTC
GATTGATGCGGACATTTTCCAAAAGCTCTTCCATGGCAAGTACCTCGACG
ACGAACTGCTTAAGGAGGGCTCTGGCTCGAAGTCGCAGGACAGGCGTCGA
CGCCCCCCATCTCCCTCCTCCAGCGACGAGTCCAACGATGCCTTGGAAGC
CCTCTTCTGCGGGAAGAGCAGCCAGTCAAAGCTGAGCAAGAGGCGCGAAC
GGTATGAGTCGTTCGATTCGGTGGACGACCTAGGAGAAGCCCTAATGCGT
CCATCGCACAGGCTGACCGTACCCAAGCCCAGTACCTCTCAGGCAGGTTC
CAAAAAGTCACAAGATGCTGCCCCACACAGAAGCATTAGCAATAGCAGCA
GCAGCAACATTGCCATGTCATCTGGGCAAACTTATGCATGTCCAAAAAAC
AAGAAAACCAATTCTGTGGCCAACAAGACAGCAGTATCTGCAAATGGTGA
TAAATGGGCTTCCGGCAAAAACAAGACCGTTACCATTGTAAAGCCCCAAA
AAACAGATCTAAGGCCTTCGCGGCTTGAACCCAAAACAGATCCATTAAAT
TTGGGTGACTTATACGGGGACTCTGACAGCGATTCGTCCTATGAGTATGA
ATCGGACTTTTACGGCGATCAAGACTCCGATGAAGAGGATGAGCCGGTGA
TCGACATTTCAACGGACACAAGCAGGACCACATCGGTGGCGGAAGCTGCC
AAACGAAAGCAACGCCAAGATGTGGAGAAGTCACTAACTGGCAAAAAGGA
ACAAGTTAAACCAGCTCGACGCCGACAACTCGCTGAGGTAGAAGAACGAC
CATCCCTTAAACGCTCAAAGACGGAGTCAGAAGCCAAGTCCACTGTCCAG
GGCAAATATATCTCTATTATTGGCAATGAGACTATCATGTCATCCACAAC
AGCGCCCATTAGGGAAACCAACAGAGAGGCGGCCAGCACATCTCCATCTG
CAAGAAAGTCGGCGGTACAAGAAGCCAAGCACGTCGAAACCACTAAGCAT
ATCATCCTAGGACCACCAGGCAAAAAGCTGCTTCATTCAGATAGTCCAGC
CGCGGAAGTCAAGAAGCCCATGGTGCAAACTCTGCTGAGTTCCACTCTAA
GTCTTCAAAAACCTTCGACACTAGACGATGGTAGTCCACTGAAAATAAGG
AAATCCTTGAAGAAGTCGATTGCCGATGAAAACATTGACGGCGATCAGTC
GATCTTTAGCAGTTCCTCTGTGCTTAATAAAAATACGTCTGTTGTTGCTC
CGAGAAAGGTTAATATATCCGTGTCCCTATTGCAATCGAAGGACACTCAA
GTGGAAACGGCTGCATCGTCATCCGAAACACCAATATTGACAAAAAAGGA
AAAACTTAAAACACAGAAATCGACCAAGAAACCGGAGGGCAATAAGAAAA
CGGAGAGCAAGAAAAAATCTTTAGTACAAGGCCCTCAAATGAAAACCCAA
AAATCCGAGGAGGCTGTATCGGGCCCAAAAATTTTGAATAAATACCTAAA
ATCGGAAACCGAATCCTCAAGGAAAACAGTTTCCACAGTAACAGGCCGGA
AACAAATTGGGCAACTGGAGGTTTTGAAGAAACCGGAAAGCAGAAAGTCG
GAGGAGTCTTTAGTAGAAGCAATTTCTCGGAAAAAGCAATCCCAAGTCCA
ACGGTTAAGTAAAATAGATGGTAGAAAATCTGAAGGAACATCTTTACCTC
AACCAGATGTCTCGAAGTCTGAAACTGCTTTGAAAGCAGCTTTGCCCAAG
GAAACAGAGTTTCCAGTTCAAGACGCAGAAATCGAGAAAATGTCTAAAGG
TCGCGGACACCAAAATGCGGTCAAAAACACCAAAACAGAACAGCCCAAAT
CGAAGCCCAAGACTGAGGTTCGTTCCCTGCAAGCTGAGGCTGCTACTGAG
CTAATGGATTCGATGGACTCTCAATCAGATGTATCCGATATCCGCGCAAC
ATTTCCCGAATCCCAAGGAATCTTCAATGTGCCAGGTCACATGACCCGAG
CTATCAGCAGCAACAGATCACTGGCACCTACACCAACTCCCATGTCTGAC
AGTCAACGAAATGCTTCTAAGGAGCGCTTTACGCCTGTTTCGGACCAAAA
AAAACCAATCAGGGAATCACAGACTTTATCAAAGCGTCGTGCACGAGGTG
GAAGGAACCAGCCACTTGTTTCAAAAAGGAAAGCGGGTGAAGCGGAAGAC
GGTACAGCGGTGATCAATCCCAAGAGACCCAGAGAGATGGATGAAGAGGA
CCACCCACAACAGAATGATCATGTCCAAGAATCTGCATTTGCTGCGTTCC
CAGTAAAAATAACAGCTGCTTCTTCTGTTATTCCCCAAGTAGTGCGTTCT
ACGGGTAATACAGTTCCTCAAAATATTAGTCCCCGCAAACTTTGCGTGAA
AATAAATCGGAGGCCCTATAATAAGTGGCTTCGGAGCACGCAGGAGAGGA
ATGAAGAACAAGAAGGATCTCGTAATGTAACGTCATTACCACTGCTTGGT
GAAACCTCGGAAACGGATTCAGCGGCGGAGTCGATGTCAGAATCAATTCT
GCAATCCCAAGTACAGTCGGAGCCTGCTATTCAGCCACTGCCTGCATCCC
AGCCCGATTCTTGTACATTACAGGCCTCAGATCTCCGAATAAGGGAAAGC
TCAGCTCAACTTGCTCCAATTGCAGCTTATGATTCACCGGCAGCTAACGA
TTCATCGACATCACCCGCTTTAGACATCGCACCCGAAAGTGCACAGACAG
CTAAAGCAACCTTGAACACTGCTCTCTGTCCATCGACTGAAAAACATCTT
CCTGACGAACCAACGTTGCTGGAAAGTTCCAAGAAGGTTGCAGAACCGCA
GAAGCTACAAACGTTTCAAGCCAAATGTTTGCCTGTGCCAATTCCAGAGG
TAAAGTCAGAGCCGGAAGATATCATGGATGAGCATTCACCTAATGAGCCC
ATGCCTATGGTTGCTGCAGCACCAGCAACACCTCAACCACATGCGATTAC
GGAAGACGCTGGGCCCGACACTATTCAAGTCAACACCTTGGGTGTTTCCA
CTTCATCTAGGCCGCTTGAGTTACATTCAATTCCCTCCGCCAGTGACCCT
GACGGAAACCCCAATGCCATTGGGCAGACCAAGATGTACTCATTTCTCTA
CCCGAAACGTTACAAGCAATCCTATGACGACGTCGGTCTAGACTTCTGCT
GTCCAAATCTCGATGGACCAATGCGGGCTATTGATTTTACTCGATTGCAT
TCGAAGGCCGAGGTACCGGTGCTGGAAATCCCGCAGTTCCTGGTTATAAC
CACCAAGTTTATCTCTAAGGCGGATAAGAATATGCCAAGTAAGGTGCGGG
CAAAGCTGGAATTACTGGACAAGTCGAAAGAACGGGATTCCAGTAAACTG
ACCCCGACGGCTACCACTCCGACTGCTGATCCCACCGGTCCTTCATCCTT
TTCACCTGCTCCCGCTTCGGTTGGTCCGGCAACTCAACCGTTTCCATCGA
TTATACAGAATTTGCTATCGGCTCCCCTACCTGATCCAGGTCTATTTAAT
CATCCCACAACCGTGGACCCATCTACTTCCACTCCCGTAGTTTCAGGCAG
TTCCTCTTCCACTACCATTTCGGCGGACTTGGATTCTTTAAGCAAACAGT
TGCCACGTGGCACAAAACTGATCAAGAAGTCAGTGCAACAAGTGGCTACC
AATCCCTCATTAGCCGGCACCTCGATGGTAATTAATGCGTCGCCGTCCTT
TATTCAGTTACCTCCGATTTGCCCCAACGACAAGCAGCGCGTGGAGTTGC
AGGCGAGGGTTCAAATGTTTGACTTGGTGCTCCAGACCCTCAGCCGGCGG
GCAGCCAACTTATCAGTGGCCGAGCGACAGCGTACCATTGAGGAAATTGT
AAGGACCAGCTCGTTAATGGCCATCGACGTGGATGTGGGTACAAAGCTTT
TGGAAAACTATGTACATTACTTAAACAAGGCTACCAGCACAATGACTCCT
CTAACCCCGGCCCAAATCAACTCGAGCTTAGGCGCTTCCACCAGCTCGAC
GCTTTCCAAAAGCATAGCCACCTCCGACATCCCACAGCAAGGGAAGAAAA
TATCTGCGGACCATGCCCAACAGCGGAGTTCTCTCCCCGCTACCATTCCC
CTTTACGATGGGGGCAGGAACACACTTGGCTTTCCGTATAGCTGCTCGAA
ATCGACGGCAGGGCGAAAGTCTTCATATGTTGCCACCAGCACGCCTGTGA
AAGCCTCCACATCCCAAGCAGCAGCAGCAGCAGCTCTAGGAAACGCTCAG
CCAAGATCCACGTTGGGGATCCCGAAAAGTGTTCGGGAAGACGCTAGTCA
GTTCGTTAATCTCAACACAACAGTGTGTATGCCAGCACCAAGGACGAATG
CCAAGAAAAAACCAGGGACTTCGGGCCCTTTAAAGTCGATGAATTCTTCA
CCAGCTGTGCAGAAACCGGCGCTGTGCAAACAGCAGACGGCGCCGGCAAG
AACTCTGTCCAAGAGCACAGTCTCATCCGTTGCACGAGCGAAATCAACAG
GGTCTTTAAGTGCAGTGTTGGGTGAGACTCCTGCTGACGAATTCGTATCC
CCCGCCGGAATGAGTCTGAGTACCACCGGAAATCCGAATGTCTTCATCAT
TAACCACGCGGTGCAGTCAGAGGAAAGCATCCTGCCTGACTCCAACAGCA
GCGTAGGGCACATGGAAACGACGGTGATCAAAGGCGAGCTGGATGATTCT
GCGGAGATTATTATATAGAAGCTTTCTAGACCAT
BS31021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-HP2-RB | 4902 | CG12864-PB | 1..4902 | 17..4918 | 24495 | 100 | Plus |
| Su(var)2-HP2-RA | 9774 | CG12864-PA | 5698..9774 | 842..4918 | 20370 | 100 | Plus |
| Su(var)2-HP2-RA | 9774 | CG12864-PA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-HP2-RB | 5417 | CG12864-RB | 253..5154 | 17..4918 | 24495 | 100 | Plus |
| Su(var)2-HP2-RA | 10289 | CG12864-RA | 5950..10026 | 842..4918 | 20370 | 100 | Plus |
| Su(var)2-HP2-RA | 10289 | CG12864-RA | 253..1079 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14607891..14611487 | 4508..912 | 17940 | 99.9 | Minus |
| 2R | 25286936 | 2R | 14607417..14607836 | 4918..4499 | 2100 | 100 | Minus |
| 2R | 25286936 | 2R | 14617427..14617748 | 384..63 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 14617046..14617363 | 698..381 | 1590 | 100 | Minus |
| 2R | 25286936 | 2R | 14616843..14616986 | 842..699 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 14611620..14611692 | 914..842 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 14617817..14617866 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6768 | 431..509 | 131 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1098 | 454..509 | 122 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1125 | 452..509 | 122 | 72.4 | Plus |
BS31021.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 10:32:15 Download gff for
BS31021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-HP2-RB | 180..5081 | 17..4918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:15 Download gff for
BS31021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-HP2-RB | 253..5154 | 17..4918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:27 Download gff for
BS31021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-HP2-RB | 253..5154 | 17..4918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:27 Download gff for
BS31021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14607417..14607833 | 4502..4918 | 100 | <- | Minus |
| 2R | 14607898..14611484 | 915..4501 | 99 | <- | Minus |
| 2R | 14611620..14611691 | 843..914 | 100 | <- | Minus |
| 2R | 14616843..14616986 | 699..842 | 100 | <- | Minus |
| 2R | 14617046..14617360 | 384..698 | 100 | <- | Minus |
| 2R | 14617428..14617745 | 66..383 | 100 | <- | Minus |
| 2R | 14617818..14617866 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:15 Download gff for
BS31021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10494922..10495338 | 4502..4918 | 100 | <- | Minus |
| arm_2R | 10495403..10498989 | 915..4501 | 99 | <- | Minus |
| arm_2R | 10499125..10499196 | 843..914 | 100 | <- | Minus |
| arm_2R | 10504348..10504491 | 699..842 | 100 | <- | Minus |
| arm_2R | 10504551..10504865 | 384..698 | 100 | <- | Minus |
| arm_2R | 10504933..10505250 | 66..383 | 100 | <- | Minus |
| arm_2R | 10505323..10505371 | 17..65 | 100 | | Minus |
BS31021.pep Sequence
Translation from 16 to 4917
> BS31021.pep
MEDIEYLDEYKDLVLPGIKSSAPTASSAGVPRQRRISSDSSNSSSIDADI
FQKLFHGKYLDDELLKEGSGSKSQDRRRRPPSPSSSDESNDALEALFCGK
SSQSKLSKRRERYESFDSVDDLGEALMRPSHRLTVPKPSTSQAGSKKSQD
AAPHRSISNSSSSNIAMSSGQTYACPKNKKTNSVANKTAVSANGDKWASG
KNKTVTIVKPQKTDLRPSRLEPKTDPLNLGDLYGDSDSDSSYEYESDFYG
DQDSDEEDEPVIDISTDTSRTTSVAEAAKRKQRQDVEKSLTGKKEQVKPA
RRRQLAEVEERPSLKRSKTESEAKSTVQGKYISIIGNETIMSSTTAPIRE
TNREAASTSPSARKSAVQEAKHVETTKHIILGPPGKKLLHSDSPAAEVKK
PMVQTLLSSTLSLQKPSTLDDGSPLKIRKSLKKSIADENIDGDQSIFSSS
SVLNKNTSVVAPRKVNISVSLLQSKDTQVETAASSSETPILTKKEKLKTQ
KSTKKPEGNKKTESKKKSLVQGPQMKTQKSEEAVSGPKILNKYLKSETES
SRKTVSTVTGRKQIGQLEVLKKPESRKSEESLVEAISRKKQSQVQRLSKI
DGRKSEGTSLPQPDVSKSETALKAALPKETEFPVQDAEIEKMSKGRGHQN
AVKNTKTEQPKSKPKTEVRSLQAEAATELMDSMDSQSDVSDIRATFPESQ
GIFNVPGHMTRAISSNRSLAPTPTPMSDSQRNASKERFTPVSDQKKPIRE
SQTLSKRRARGGRNQPLVSKRKAGEAEDGTAVINPKRPREMDEEDHPQQN
DHVQESAFAAFPVKITAASSVIPQVVRSTGNTVPQNISPRKLCVKINRRP
YNKWLRSTQERNEEQEGSRNVTSLPLLGETSETDSAAESMSESILQSQVQ
SEPAIQPLPASQPDSCTLQASDLRIRESSAQLAPIAAYDSPAANDSSTSP
ALDIAPESAQTAKATLNTALCPSTEKHLPDEPTLLESSKKVAEPQKLQTF
QAKCLPVPIPEVKSEPEDIMDEHSPNEPMPMVAAAPATPQPHAITEDAGP
DTIQVNTLGVSTSSRPLELHSIPSASDPDGNPNAIGQTKMYSFLYPKRYK
QSYDDVGLDFCCPNLDGPMRAIDFTRLHSKAEVPVLEIPQFLVITTKFIS
KADKNMPSKVRAKLELLDKSKERDSSKLTPTATTPTADPTGPSSFSPAPA
SVGPATQPFPSIIQNLLSAPLPDPGLFNHPTTVDPSTSTPVVSGSSSSTT
ISADLDSLSKQLPRGTKLIKKSVQQVATNPSLAGTSMVINASPSFIQLPP
ICPNDKQRVELQARVQMFDLVLQTLSRRAANLSVAERQRTIEEIVRTSSL
MAIDVDVGTKLLENYVHYLNKATSTMTPLTPAQINSSLGASTSSTLSKSI
ATSDIPQQGKKISADHAQQRSSLPATIPLYDGGRNTLGFPYSCSKSTAGR
KSSYVATSTPVKASTSQAAAAAALGNAQPRSTLGIPKSVREDASQFVNLN
TTVCMPAPRTNAKKKPGTSGPLKSMNSSPAVQKPALCKQQTAPARTLSKS
TVSSVARAKSTGSLSAVLGETPADEFVSPAGMSLSTTGNPNVFIINHAVQ
SEESILPDSNSSVGHMETTVIKGELDDSAEIII*
BS31021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-HP2-PB | 1633 | CG12864-PB | 1..1633 | 1..1633 | 8180 | 100 | Plus |
| Su(var)2-HP2-PA | 3257 | CG12864-PA | 1714..3257 | 100..1633 | 6792 | 89.3 | Plus |
| Su(var)2-HP2-PA | 3257 | CG12864-PA | 1..1061 | 1..1022 | 1457 | 37.8 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 226..1266 | 14..1039 | 272 | 19.8 | Plus |
| futsch-PF | 5495 | CG34387-PF | 2921..3932 | 39..1022 | 258 | 21.6 | Plus |
| futsch-PE | 5495 | CG34387-PE | 2921..3932 | 39..1022 | 258 | 21.6 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 197..1167 | 139..1240 | 249 | 19.9 | Plus |
| futsch-PF | 5495 | CG34387-PF | 3230..4785 | 72..1631 | 244 | 19.1 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 146..1207 | 467..1589 | 201 | 19.7 | Plus |
| futsch-PF | 5495 | CG34387-PF | 1544..2932 | 71..1522 | 191 | 18.6 | Plus |
| futsch-PF | 5495 | CG34387-PF | 1924..2900 | 61..1048 | 167 | 20.2 | Plus |
| futsch-PF | 5495 | CG34387-PF | 2000..3086 | 8..1034 | 166 | 19.5 | Plus |
