BS31023.complete Sequence
4484 bp assembled on 2012-07-30
GenBank Submission: KX806424
> BS31023.complete
GAAGTTATCAGTCGACATGAAGCGAAGAAGTCAAACTAGAGCCGAACAAG
CCGTTCCACCAGCTAAAACTACAAAGGAGAATAGTGGATCGCTCACAGTG
TCCCAGCTCAGCTCCGATGTTATTTGGCAGCTGGCATCGCAGTACTGGAC
GCCGGACACGAAAGCAGATCACCTGCCGTACAGTGCCAAGATCATCGAAC
GCATTTACAATGAGGAGATCGGTGATGGCGGTGGCCACAGTGCACGGAGG
ATAAACATGCTGGAGTTCAGTCAGTATCTGGAGCAGTACCTGTGGCCACA
CTACCAACGTGAAACCGCCACCCATGCCCACCTTATGTCCATCGTTATAA
TGGCCAACGAGAAGTTCCGGGAGCGCGTCGAAGTTTGGACCGTGTTTGAA
AAGCTCCCGGATCAGTATCCAGCCTTCTTTCGCCACGTGCTAGAGAGCTG
TTTGCCGAGCAAAAAGGCAAAGGAGGCTAGTAGCACGCTAAGGGAGCGGA
CAGCGCTGTTGATGTTCATTAACCACTGCTTTAACAGCATGGAGATAGAG
CTGTGCAGAGAACAGGCCAAACGACTAGTCTCCTTGTCCATGTGGCATTG
CCTGCAGCCTCGCCGTCGCGAACAAGAGCTTCGAGAAGTTCCTGAGTGGC
GAAAGTACTGGAAACGCTTGCTCAAGAAGGAGAAAGACAGCAAACCGGAG
GTCCTCTGGGAGAGACACTTTATGCAGAACCTTATCATTGACTTCCTGCA
CATACTCGAAAGCATTCCCGCCGAAGGCGAGGTGCCGCGCAACGTGGTTC
ACTACTGTGAGCGCTTCCTAGAGTTTATTATCGACTTGGAGGCACTTTTG
CCGACTCGACGCTTCTTCAACACGGTTTTAGACGACTGTCATCTGATTGT
GCGGGCTCTTCTGTCACCCTTGGTTCGTCGCGAGGAGGGAAAACTGTTTG
GTCAGCTCCTGGACATGCTAAAGTTTTATACCCGCTTCGAGATCAACGAC
GTTACTGGAAGTTCGCTCACTGATCACGACATGACCCAGCTGCACTACAA
GAAGATCACCTCGCTGCAGCGAGCGGTGTTCGCCAAGTTTCCCAGCCTGC
GGGTCTTTGCCTTGTCCAACGTAGCCACGGTGGATAACAGGGAGTCGCTG
GAGCAGCACTTCGGTGGGTTGGATGGCAAGGGACTCCTTCAGATTGCCAC
GTTCTTGAATCTCGTGCCAGAGGAGGTGGTCTCACCCTTGGACTGGCATC
GGGTAGACGAGCAATTTCTGCGTGAGCTGCTGATTACGCGACATGAGCGA
CGCTGTTCGCAGTTGGAGGCGCTAAACGAGATGCCCCTGTATCCCACGGA
GCAGATCATCTGGGACGAGAACGTGGTGCCCTCGGAATATTACTCCGGTG
ACAGCTGCTTGGCGCTACCCAAACTTAATCTGCAGTTCCTGACTCTCCAC
GATTATCTCCTACGCAACTTTAACCTATTCCGCTTGGAATCCACCTATGA
AATCCGCCAAGATATCGAAGATGCCGTCAGCCGCATGTTGCCATGGAAAT
CCGAAGATGGCGATGTTGTGTTCGGTGGCTGGGCAAGAATGGCTCTGCCC
ATTGCCAGCTTTGCCGTTGTCGAAGTGGCCAAACCTCATCTTGGCGAAAA
GAAGCCCTCCAGAGTACGTGCTGATGTGGGCGTAACTCTTTCGGTGCGCC
GAGAGATCAAGGCAGAGTGGGAGAACCTTCGAAAGCACGACGTGTGCTTC
CTCATAACCGTAAAGCCAACGCAACCATACGGCACTAAGTACAAGCACCG
CGAGCCTTTTGTTCCCCAGGTAGGCTTGGTCAGTGTCCGTGGGTGTGAGG
TGGAGGGCATGCTAGATGCCAATGGCCGAGTCATAGAAGACGGCCCGGAA
CCAAGGCCACAGCTGCAGGGTGAGAATCGTTGCTACCGCGTTTGGCTGGA
CTCCAATCAGTACCGCTTGGATATGGACGATCTACAGGAGGGAGCCGACG
ATGTCTACGAGAGTTTTAACATCCTCATGCGCCGCAAGCCCAAGGAGAAT
AACTTCAAGGCCGTGCTGGAAACCATACGTCATTTAATGAATACTGAATG
CGTGGTTCCGCCTTGGCTTCACGACATCCTTTTGGGCTATGGTGATCCTG
GAGCTGCCCACTACAGTAATATGCCCAATCAGGAACGCAGTCTGGAGTTT
AACGATACCTTCATGGATTACAATCATCTTGAGGCCAGTTTCCCCCAATA
TAATTTGAAGTGTGAGGTGCCAGTGGAAAACCGCCAACCTCCTTTTAGGC
TAATATTTGAGGATGTGCCTATTCAAAAGGAAAGCGATGGAGAGGATCCT
GAAGAGAAACCTGAAGAGAAATTGACCAAATCCATTTTGGTGCAGCCCTA
CAAATATGAAGCCAGGGGCCCATATCCCAGCGACAAGCCTAAACAAAACT
CTATTCGTTTTACACCCACTCAAGTGGAAGCCATTCGTGCTGGAATGCAA
CCGGGACTGACACTGGTGGTCGGTCCTCCTGGCACCGGTAAAACTGACGT
GGCTGTGCAAATTATATCGAATATTTACCACAACCACCCCAATCAACGAA
CCCTTATTGTGACCCACTCCAATCAGGCGCTCAACCAGTTGTTCGAAAAG
ATCATGGCTTTGGATATCGATGAGCGGCACTTGCTACGTCTTGGTCACGG
CGAGGAAGCTTTGGAGACCGAGAAAGACTACAGTCGATATGGACGAGTCA
ACTATGTACTGGCCAAGCGTATGGATCTTCTTAGCCAGGTGCAGAAGTTG
CAAGAGGCGCTTGGCGTGAGTGGTGATAATGCTTACACTTGTGAAACCGC
CGGCTATTTTTATCTGTACAATGTCATGGCGCGATGGGAGAAGTTCCAGA
GTCAGATAAGCGTACATAAAGGGGAGGCGGATGCGGAGAAGCTAAGAGCA
GAGTTTGAAAAGGAGTTTCCCTTTGGAAAATTCTTTGCAGATGCCCCGCA
GCCATTGTTCAAGGGCGCGAATTATGATGAACTTATGGATATTGCCTGCT
CTAATTTCCGATACATTTCGGATATATTCAACGAACTAGAGGAATTCCGT
GCTTTTGAATTGCTTCGCACGGGACTAGATCGATCGAAATATTTGCTAGT
CAAAGAGGCAAAGATCATTGCCATGACTTGTACACATGCGGCACTCAAAC
GCAAGGAGCTGGTTAATCTCGGTTTTCGATACGACAATATCCTTATGGAA
GAATCGGCGCAGATCCTGGAGATCGAAACGTTTATTCCCCTGCTGCTGCA
GAATCCGCTGGATGGACTTAATCGTCTTAAACGTTGGATCATGATCGGGG
ATCATCATCAGCTGCCGCCTGTGATTAAGAACATGGCTTTCCAAAAGTAC
TCCAACATGGAACAGAGTCTGTTTACCAGGCTGGTTCGTCTCGGAGTGCC
TACCGTAGATCTTGACGGGCAGGGTCGTGCACGAGCCAGTATTTGTTCGT
TGTACAAGTGGCGCTACAAGAAGCTGGAAGACCTGCAGCACATCTTTGAG
CGGGATGAATACAAACAGGCTAATCCAGGATTTGTTCACGACTACCAGCT
TATTAATGTCGAAGATTTCAAGGGAGTGGGGGAAAGCGAGCCCAATCCCT
ACTTCTACCAGAATCTTGCTGAGGCAGAGTACATTGTCGCCGTGTACATG
TATATGCGTCTGCTGGGCTACCCTGCAGCTAAGATCTCCATTTTGACAAC
CTACAATGGTCAAAAGCATCTCATCCGCGACGTAATCAACGCCCGATGCG
GAAACAATCCTCTTATTGGTTGGCCGCATAAGATTACCACCGTGGATAAA
TACCAGGGTCAGCAGAACGACTACATACTCATTTCTCTAGTACGCACCAA
GGCGGTTGGACATCTGCGGGATGTACGACGTTTAGTGGTGGCCATGAGTC
GAGCGCGTCTGGGATTATATGTATTTGGCAGGGTCTCCTTGTTTAAGAAC
TGTCTGGAACTTCAGCAGACTTTCAAGCTTAGACCTTTGAAGTTGAGTCT
GGTACCCGAAGACAAGTTCCCCACGGATCGTTTGGCTAGTGCTGCTGTAG
CCAGTCAAGATATCAAGACGGTAGAAAACATGTCCGAAATGGCACAGTTT
GTGTACGAGCGGTACATGGCAAAAATGGAGGAGCTAAAGGGCACTCTTCC
TTCCGAAGAAGAGTTGGAAGCAATGCGCAACCAGCTGCTGCAGGAAGATG
AGGAATCTGTTCCAGAAGCTTCCGAAGAGCCTCCGGAAAAAAGAGCAGCT
AAGGAAGAGCCATTGTCCAAAAAGAAAACAACAGAAGCCTTTAAGCCCAC
CCCTATTCTCAACGAAATAAACGTGGACGACACGGAGATGGGTCAAAGGG
AACAAATTGAAGAGGAAGCTACTGATCAAGACAAAACCCAGGAGTCGGCT
CCAGCTGAAGAGTCTTAGAAGCTTTCTAGACCAT
BS31023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31368-RC | 4452 | CG31368-PC | 1..4452 | 17..4468 | 22260 | 100 | Plus |
| CG31368-RD | 4461 | CG31368-PD | 1..4461 | 17..4468 | 22135 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31368-RC | 4621 | CG31368-RC | 83..4536 | 15..4468 | 22270 | 100 | Plus |
| CG31368-RD | 4630 | CG31368-RD | 83..4545 | 15..4468 | 22145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11890143..11891358 | 2446..3661 | 6080 | 100 | Plus |
| 3R | 32079331 | 3R | 11888491..11889529 | 953..1991 | 5195 | 100 | Plus |
| 3R | 32079331 | 3R | 11883046..11883530 | 128..612 | 2425 | 100 | Plus |
| 3R | 32079331 | 3R | 11889589..11890045 | 1989..2445 | 2285 | 100 | Plus |
| 3R | 32079331 | 3R | 11891860..11892297 | 4031..4468 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 11891420..11891791 | 3659..4030 | 1860 | 100 | Plus |
| 3R | 32079331 | 3R | 11883592..11883935 | 612..955 | 1720 | 100 | Plus |
| 3R | 32079331 | 3R | 11882872..11882991 | 15..134 | 585 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:57:58 has no hits.
BS31023.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:19 Download gff for
BS31023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RC | 80..4531 | 17..4468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:03 Download gff for
BS31023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RC | 85..4536 | 17..4468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:28 Download gff for
BS31023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RC | 85..4536 | 17..4468 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:28 Download gff for
BS31023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11882874..11882987 | 17..130 | 100 | -> | Plus |
| 3R | 11883049..11883529 | 131..611 | 100 | -> | Plus |
| 3R | 11883592..11883935 | 612..955 | 100 | -> | Plus |
| 3R | 11888494..11889528 | 956..1990 | 100 | -> | Plus |
| 3R | 11889591..11890045 | 1991..2445 | 100 | -> | Plus |
| 3R | 11890143..11891358 | 2446..3661 | 100 | -> | Plus |
| 3R | 11891423..11891791 | 3662..4030 | 100 | -> | Plus |
| 3R | 11891860..11892297 | 4031..4468 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:03 Download gff for
BS31023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7708596..7708709 | 17..130 | 100 | -> | Plus |
| arm_3R | 7708771..7709251 | 131..611 | 100 | -> | Plus |
| arm_3R | 7709314..7709657 | 612..955 | 100 | -> | Plus |
| arm_3R | 7714216..7715250 | 956..1990 | 100 | -> | Plus |
| arm_3R | 7715313..7715767 | 1991..2445 | 100 | -> | Plus |
| arm_3R | 7715865..7717080 | 2446..3661 | 100 | -> | Plus |
| arm_3R | 7717145..7717513 | 3662..4030 | 100 | -> | Plus |
| arm_3R | 7717582..7718019 | 4031..4468 | 100 | | Plus |
BS31023.pep Sequence
Translation from 16 to 4467
> BS31023.pep
MKRRSQTRAEQAVPPAKTTKENSGSLTVSQLSSDVIWQLASQYWTPDTKA
DHLPYSAKIIERIYNEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET
ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPAFFRHVLESCLPSKK
AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR
REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI
PAEGEVPRNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS
PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL
QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV
PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD
ENVVPSEYYSGDSCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI
EDAVSRMLPWKSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV
RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFVP
QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR
LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW
LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFMDYNHLEASFPQYNLKCE
VPVENRQPPFRLIFEDVPIQKESDGEDPEEKPEEKLTKSILVQPYKYEAR
GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII
SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE
TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL
YNVMARWEKFQSQISVHKGEADAEKLRAEFEKEFPFGKFFADAPQPLFKG
ANYDELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI
IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG
LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD
GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED
FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK
HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL
RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK
FPTDRLASAAVASQDIKTVENMSEMAQFVYERYMAKMEELKGTLPSEEEL
EAMRNQLLQEDEESVPEASEEPPEKRAAKEEPLSKKKTTEAFKPTPILNE
INVDDTEMGQREQIEEEATDQDKTQESAPAEES*
BS31023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31368-PC | 1483 | CG31368-PC | 1..1483 | 1..1483 | 7768 | 100 | Plus |
| CG31368-PD | 1486 | CG31368-PD | 1..1486 | 1..1483 | 7754 | 99.8 | Plus |
| CG6204-PA | 903 | CG6204-PA | 611..899 | 1041..1353 | 196 | 27.4 | Plus |
