BS31030.complete Sequence
5597 bp assembled on 2012-07-27
GenBank Submission: KX802146
> BS31030.complete
GAAGTTATCAGTCGACATGCCACCCAAGATGGAGCCGATTAGCGTGCGCA
CCGCGCGTCTGAACAACCTGATTCTGGGCAAAGGAGCTGGCGTCTGTGCG
AAGCCCGCTGGAAGCGCCTCCGGATCAGGTATTCCCGCCTCCACCAGGAG
AAGCATTGTACCCGTGAGCACCACTAGCGCCGCCGTGGCCGAGGCCATCT
GCCGCGAGGGACTCCTGGACGCCTTCTGTCTGCTGTACAACGAGTGCGAC
AAGGATACGCTGAAGAAGCGCGATCGCAACATCGCCGAGTTTGTCAACAA
ATTTCGTCCCATCATAGAGGAGACCCGCAAACTCAGGGTCAACGCAGATG
ACTTCCTCATCAAGACGCTTATTGGCCAAGGATACTTTGGCAACGTTCAC
CTGGTGGTGGAGCGGCAAACCAACGACATATACGCCATGAAGAAGATCAA
AAAGTCGGTGGTGACGACGTCACAAGTCAAGGAGGAGCGCGATATCATGT
CCATTCGCAACTCTGAATGGCTAATCAATCTGCAGTATGCCTTTCAGGAT
AACGACAATCTGTACCTGGTCATGGAGTACATGCCCGGCGGAGACCTTCT
CAGCTTGATGTCACGCCACGGCCCTTTCGATGAGGACTTGGCTCGTTTCT
ATCTGGCCGAGCTCACAGTGGCCCTGCACACATTGCACGAGATGGGCTAT
GTGCATCGGGATATAAAGCCTGAAAATATACTGATTGATCGTTTTGGCCA
TATTAAACTGGCTGATTTCGGTAATGCCGCTGCCTTGGATCGCGATGGCC
ATGTGCTGAGTTTGTCGCCGGTGGGAACACCGGATTACATAGCTCCAGAG
CTGCTGCAAACCATATCCACCTACAAGCTGTCCAAGTCGATGCACGATGT
CAGCTGCGATTATTGGTCCATGGGCATTATAGGATATGAGTTAATATGCG
AGACAACACCTTTTCACGAGGACAATGTACACGAGACATACTCCAAGATT
CTCTCCCATTGCGAGGAGAGTCACCTTAAAGAGCTCATCAGCTTTCCCGC
CGACTTGAAGGTGTCTGTTAACTATAGAAATCTTATTGAGTCACTGGTCA
CAAATCCTTCGAAGCGATTGTCCTATGAGCGCATTAAGAATCACCCCTTC
TTTAGCGAAATTCCGTGGGGTTCCATTCGCTCGCAGGTTCCACCGATTAT
ACCAACTGTTAGGTCTGACGATGATACCTCCAATTTCGAGGACGGAATTC
GTCATAAGACTCGCAGAGAACAGGGAGTTGCTAAAAAGTCCCTTACGACT
AACATGAAATCGAATGATTTCAGTGGCAAGGATCTGCCATTCATTGGGTA
CAGTTTTGTGCACATGGAAAAGTCGGCAATTTCCGCTACCACCGATGAAA
AGCTTCAGGAGAAGCTAAAGGAACTGCTGCAGAAACTGAAGACTAGAGAG
AACGAGATTTCCATGCTGAAACAAGATCTTCTGCGGGCTCAGCAATCGCT
GAGGAAGACCGATAACAAATCTCAGGTGGTAGCCGATGCTAAAATGGAAA
TTAAGAAGCTGCAACAGATTATCAAGGAGAAAACAATGGAGCTTACCACT
TGCAAGACGCAAATTAAGACACTCCAAAGTTCGGCCAAAATAGACGAGGA
AATGTGGTCCAAGAAGGAAGCCACTATCACCGATCTCCTTCGCCTTAATC
GACAAAAGTACGAAGAAGCCAAGATCGCTTCGGAGCAACGATATGAGAAA
CAATTGGCGGACAAAAAGCAAGAGCTGGCATCCACGCTGCAAAAGTTAGA
TGCCCGTGAGTTGGAGTTCAATGCCAAGTTCGAAGAGTGCAAGCATTTGT
CCATGAAGTTGCAAAACTACAAGGATATGCTGCAGCAGATCAAGGAGCAG
AATCTCAAGTCCGAGACAAACCATGAGGAGCAGAGGCGCCAAATGGCCGA
ATTGTATGAGCAAAAGCTAACAGATCTCCGGAAAAAGGTTCGCGACTCGC
AGGATACAAACCGCCGCATGACAATGGAGATAAAGGAAATACGCACCGAG
CTGGACGAGTCCATATCCTCCAGCAAGTCCACCCAAGAAGCGAAGAACGC
TACCGAGCGGAATATCGAAGAAATTCTGCGGCGTCTGAACGAGGAGATCG
CCTCCAATAATGAGCTTCATGCGGAAAAGGTCAAACTGGAGACGAAGCTG
CAGCTGAAGGAAAATGAAACTCAAGAAGTTAGAGCCGAATGTCATCGACT
TGAGAGGGAATTGCAGCTTGCCGAATGTCGCTGTCAGCTGGCTGAATCCT
CACTAGCCACCCAGGTTTCCCCCTACGAAACTGCGCCTGGATCTTTGACC
GAACTGAATGCCATTGAGGATCAACTTCGCGCCGACTTGTTAGCCGCCAA
AGAGAGTGAAAACCATCAGAAGGGACGCGCCGATCAACTGCAGACGCTGG
TTACCAAACTGGAGCAAATGCTGGAGCGCTTCAACGAGCAGAGTCTTTCA
CCCACGAAATCGCACTCATCGCGTAAGCAAGAAGGTGAAACCGTTGGTGA
TATGCTCGAGCGGCAAAACGAGAAGCTGGAGGATAAATTGGCAGCAGTGC
GAGAGCAGATGATTGTGGAACGTCAGGCAGCGCGTACAGCGAATCTATCG
CTCTGGAAGGTGGAGAAACAGCTCGAGGAAGCTTTGTCCGAGAAGAAGTT
ACTGGCGCGTCGCATGGAACTCACAGAGGATCGGATTAAAAAGGTGCAGA
ACGCAAGCGATGAAGCGCAGAGAATGCTCAAGACGTCACAGGAGGAAACT
CGCCAGCGGGAGTCTCGCATCGAGGAGCTGAAGCAGGAACTGGCGGCCGC
CAAAAGGGATGTCCTCAAGGAGCACCGCCAATGGGAAAAGGCCGAGCAGG
AGCGCATGAAGTGCAAGTCGGAGATAATCGAGCACTTGGCCAATGTGCAC
AGATTAGAACAACAGGAGACGGAATTGCGCCAGAAACTCAGGCAAATCCA
ATCGCGATTTGATGGTGTAACTTTGGAACAGAAGAATACCATTCGAGAAC
TGCAGGAGGAGCGAGAAAAGAGCAGGAAAGCGAATGACTCTTGTTTGGTC
TTACAGAAGGAGCTGAAACAACTCACCGATAACTTCCAGAGGTTGAAGTA
CGCTTGTAGCATTACCGACAGCCAGCTAACTGAGGTGGAGACCATGCTAA
AATCGGAGCAGGAACGAAATAAATCCCAGAAATCTCAACTTGATACCCTT
CATGAGAAACTCAGAGAGCGCAACGATCAATTAACTGATCTACGAAAGCA
ACTAACTACGGTGGAATCGGAAAAGCGTCTGGCGGAGCAGCGTGCTCAAG
TGTTGGCATCGGAAATCGATGAACTTCGTCTCAATCTCAAGGAGCAGCAG
AAGAAGCTGGTGGCGCAGCAGGATCAGTTGGTGGAGCAGACTAACGCACT
GTTTGCCACCCAAGAGAGAGCTGAACTTTTGGATGGGCAAAATGCCAATT
ACGAAGCCCAAACTGCGGATTCGAATCGCGAAATGGTTAGTTTGAAGGAG
GAAAATGCTAGAATTCTCAGCGAGCTGTTCCACAAGAAGGAGGAGGTTGG
CAATCTTCAGGCGGAGATAAGGGGCTTGGAGTCTGCGCAAGCCAACTTGC
ACGCAGAGATCGATTCCCTTCAGGACACTTTGGCCGAGAAGGAGCAGTTC
TACGTGCAGCGGGACATTAAATCGAATGCCACACTTGCGCAGCACAAAAA
GCTGATTGACTACCTTCAGCTCAAAGTTGAGGACCTATCCGCCAAGAAGA
AAAAGACATTGGCGGACAAACTTTTCGGTTCTAGCCACACAAACAAGGAG
AACGTGTCACCCAATGACGTGGAATCTTCCATTCTGTATCGCGCTCTAAA
GGAGGAACTGAAGCGAGAACAAAAGATGAACAGCTTGCTGAAGGAGCAGT
TGGCTCAGTTGAATGGAACTGCAACCTTGCGCTCTCCACGCAAATCTGCA
GCTGTTAATGGCGACTCCGATGCACCCAAACAGAGACCCGTAAGCATTGC
TGCCTTGCCACGTTCTCCACAGAAGCAGCAGCAGCCCCTGAAGCGCACCA
CCAGCCAGGTGGAGCTGAAGACGACGGCGGAGAAACCGACTAAAGTAACC
ATTGAGAACCAGGCTCATCACCGTTTCGAACTGGCCCTGCAGGAGTCCAA
GGTGGATGCCGTCAACTGTGTAGTTTGCGAAAAGGCCGTCGTTGCCGGTT
CGCCGTTCTGGAAATGCAAGGAGTGCAAAGATGTTACGCATCGCAAGTGT
CGCTCCAATGTTCAGAGCCATTGCGGATCCACCAAGCCGACTGCACCGTC
AGCCGATGATCTTAGCAGTATTCAATCTGTCTCCAGCTTGACTTTGGATA
GCGTAGATGTTGCGGGTGGTACAACCAGCGGTGGCGAGTACATTGGATCG
CTGGTCTACAGTTCGGATGGTGCAGAAGATCAGGCACGGAAGGAGATCGA
AGTGAACTGCGCCTTTGAAGTGGCCGAGCAGCAAATACTCCTATTGGGCT
GTAACACGGGACTGTATGCGTATCACTTGGACTCGCAGCGATTGGTGCAC
ATTTCTGGTCTCGAATCGGTGAGCTGCATGTCCATTTGCAAGCGCCTGGC
TAAGGCTATAATGGTGGGCACAGTTGGCGAGAAGCTATATCAATGTGACT
ACCGCCAGCTGGAGTCACGCTGTCAGAGCTCCAGTTCGTGTCACAAGCCT
GTGCTGGAAACGTCGGCCATTGAGCTGCCATTTGCCAATCGCACGCCATC
GGAGAAATGGAAACTAGTGCTGATCTCCGATGAGGCGGAGAACGCATTGG
ATTCGGTGGCTATTGCGGCCACGTCCACTAGGATTGTCATCTTGAAGTAC
GACCTTAAGCTGCACATGTTTAAGCCAGTTCGAGCCTTGGACACGGCCAC
GCCGGTCACATCCATATTCTTTACGCGTCACTCGGCCATTGTTAGCTCGG
ATAAGTTCTACGAGATCGATTTGGACAACTATGCGGCTGAGGAGTTTGTG
GATCTGTCCGATAAGTCAATGGAGAGCACTGCCAAGTGCCAGCCCCTAAC
TGCGGTGCGCATCTCACGACAAGAGTATCTGCTCTGCTTTGCCGAATATG
GCGTCTTTGTGGACGAGTTTGGCTGCAGATCCAGGCCGTACGATTTGAAC
TGGGTCTATGCACCCACTGGATTTGTTTACCGCGATCCATTCCTATTCAT
ATCGCACTATCAAAGCGTGCAGATAGTCCGTTTGCATCGGTCGTTCAGCA
AGGAAATGGCCAGCGGGGATAACGCATCGGAGAATTCGGAATCCCCGGAA
CTGCAGCGCGTCTACTTGCCCCACTACATGTCCACGCTGCTGGCCAACAG
CGGAGATGTCAATCTCTATGCCGTGGCCATCGATCAGAGGCCCTGCAATG
GAACACAGAAGATCTACCATCTGGACACGATGCAGGCATTCAAGCAGAAG
TTCAATATCTCCATGGAAACGCTGTCTTCAGTGGCCACTTCTGTGACTTT
GGGCTCGACTGTCACCGGAAATAGCATATAGAAGCTTTCTAGACCAT
BS31030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sti-RA | 5565 | CG10522-PA | 1..5565 | 17..5581 | 27825 | 100 | Plus |
| sti-RB | 5577 | CG10522-PB | 1..5577 | 17..5581 | 27670 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sti-RA | 6072 | CG10522-RA | 148..5714 | 16..5582 | 27835 | 100 | Plus |
| sti-RB | 6084 | CG10522-RB | 148..5726 | 16..5582 | 27680 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12508356..12509973 | 5582..3965 | 8090 | 100 | Minus |
| 3L | 28110227 | 3L | 12510301..12511805 | 3769..2265 | 7525 | 100 | Minus |
| 3L | 28110227 | 3L | 12512035..12513402 | 2266..899 | 6840 | 100 | Minus |
| 3L | 28110227 | 3L | 12513472..12513826 | 900..546 | 1775 | 100 | Minus |
| 3L | 28110227 | 3L | 12514382..12514668 | 302..16 | 1435 | 100 | Minus |
| 3L | 28110227 | 3L | 12513880..12514125 | 548..303 | 1230 | 100 | Minus |
| 3L | 28110227 | 3L | 12510028..12510226 | 3966..3768 | 995 | 100 | Minus |
| X | 23542271 | X | 19350633..19350693 | 5055..4995 | 245 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:51:15 has no hits.
BS31030.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 18:25:38 Download gff for
BS31030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sti-RA | 123..5687 | 17..5581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:40 Download gff for
BS31030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sti-RA | 149..5713 | 17..5581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:22 Download gff for
BS31030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sti-RA | 149..5713 | 17..5581 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:22 Download gff for
BS31030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12508357..12509972 | 3966..5581 | 100 | <- | Minus |
| 3L | 12510029..12510224 | 3770..3965 | 100 | <- | Minus |
| 3L | 12510301..12511803 | 2267..3769 | 100 | <- | Minus |
| 3L | 12512035..12513402 | 899..2266 | 100 | <- | Minus |
| 3L | 12513474..12513824 | 548..898 | 100 | <- | Minus |
| 3L | 12513881..12514125 | 303..547 | 100 | <- | Minus |
| 3L | 12514382..12514667 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:40 Download gff for
BS31030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12506981..12507225 | 303..547 | 100 | <- | Minus |
| arm_3L | 12507482..12507767 | 17..302 | 100 | | Minus |
| arm_3L | 12506574..12506924 | 548..898 | 100 | <- | Minus |
| arm_3L | 12501457..12503072 | 3966..5581 | 100 | <- | Minus |
| arm_3L | 12503129..12503324 | 3770..3965 | 100 | <- | Minus |
| arm_3L | 12503401..12504903 | 2267..3769 | 100 | <- | Minus |
| arm_3L | 12505135..12506502 | 899..2266 | 100 | <- | Minus |
BS31030.pep Sequence
Translation from 16 to 5580
> BS31030.pep
MPPKMEPISVRTARLNNLILGKGAGVCAKPAGSASGSGIPASTRRSIVPV
STTSAAVAEAICREGLLDAFCLLYNECDKDTLKKRDRNIAEFVNKFRPII
EETRKLRVNADDFLIKTLIGQGYFGNVHLVVERQTNDIYAMKKIKKSVVT
TSQVKEERDIMSIRNSEWLINLQYAFQDNDNLYLVMEYMPGGDLLSLMSR
HGPFDEDLARFYLAELTVALHTLHEMGYVHRDIKPENILIDRFGHIKLAD
FGNAAALDRDGHVLSLSPVGTPDYIAPELLQTISTYKLSKSMHDVSCDYW
SMGIIGYELICETTPFHEDNVHETYSKILSHCEESHLKELISFPADLKVS
VNYRNLIESLVTNPSKRLSYERIKNHPFFSEIPWGSIRSQVPPIIPTVRS
DDDTSNFEDGIRHKTRREQGVAKKSLTTNMKSNDFSGKDLPFIGYSFVHM
EKSAISATTDEKLQEKLKELLQKLKTRENEISMLKQDLLRAQQSLRKTDN
KSQVVADAKMEIKKLQQIIKEKTMELTTCKTQIKTLQSSAKIDEEMWSKK
EATITDLLRLNRQKYEEAKIASEQRYEKQLADKKQELASTLQKLDARELE
FNAKFEECKHLSMKLQNYKDMLQQIKEQNLKSETNHEEQRRQMAELYEQK
LTDLRKKVRDSQDTNRRMTMEIKEIRTELDESISSSKSTQEAKNATERNI
EEILRRLNEEIASNNELHAEKVKLETKLQLKENETQEVRAECHRLERELQ
LAECRCQLAESSLATQVSPYETAPGSLTELNAIEDQLRADLLAAKESENH
QKGRADQLQTLVTKLEQMLERFNEQSLSPTKSHSSRKQEGETVGDMLERQ
NEKLEDKLAAVREQMIVERQAARTANLSLWKVEKQLEEALSEKKLLARRM
ELTEDRIKKVQNASDEAQRMLKTSQEETRQRESRIEELKQELAAAKRDVL
KEHRQWEKAEQERMKCKSEIIEHLANVHRLEQQETELRQKLRQIQSRFDG
VTLEQKNTIRELQEEREKSRKANDSCLVLQKELKQLTDNFQRLKYACSIT
DSQLTEVETMLKSEQERNKSQKSQLDTLHEKLRERNDQLTDLRKQLTTVE
SEKRLAEQRAQVLASEIDELRLNLKEQQKKLVAQQDQLVEQTNALFATQE
RAELLDGQNANYEAQTADSNREMVSLKEENARILSELFHKKEEVGNLQAE
IRGLESAQANLHAEIDSLQDTLAEKEQFYVQRDIKSNATLAQHKKLIDYL
QLKVEDLSAKKKKTLADKLFGSSHTNKENVSPNDVESSILYRALKEELKR
EQKMNSLLKEQLAQLNGTATLRSPRKSAAVNGDSDAPKQRPVSIAALPRS
PQKQQQPLKRTTSQVELKTTAEKPTKVTIENQAHHRFELALQESKVDAVN
CVVCEKAVVAGSPFWKCKECKDVTHRKCRSNVQSHCGSTKPTAPSADDLS
SIQSVSSLTLDSVDVAGGTTSGGEYIGSLVYSSDGAEDQARKEIEVNCAF
EVAEQQILLLGCNTGLYAYHLDSQRLVHISGLESVSCMSICKRLAKAIMV
GTVGEKLYQCDYRQLESRCQSSSSCHKPVLETSAIELPFANRTPSEKWKL
VLISDEAENALDSVAIAATSTRIVILKYDLKLHMFKPVRALDTATPVTSI
FFTRHSAIVSSDKFYEIDLDNYAAEEFVDLSDKSMESTAKCQPLTAVRIS
RQEYLLCFAEYGVFVDEFGCRSRPYDLNWVYAPTGFVYRDPFLFISHYQS
VQIVRLHRSFSKEMASGDNASENSESPELQRVYLPHYMSTLLANSGDVNL
YAVAIDQRPCNGTQKIYHLDTMQAFKQKFNISMETLSSVATSVTLGSTVT
GNSI*
BS31030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sti-PA | 1854 | CG10522-PA | 1..1854 | 1..1854 | 9359 | 100 | Plus |
| sti-PB | 1858 | CG10522-PB | 1..1858 | 1..1854 | 9344 | 99.8 | Plus |
| Rok-PC | 1374 | CG9774-PC | 34..1108 | 60..1084 | 964 | 28.3 | Plus |
| Rok-PD | 1381 | CG9774-PD | 25..1099 | 60..1084 | 964 | 28.3 | Plus |
| Rok-PB | 1381 | CG9774-PB | 34..1108 | 60..1084 | 964 | 28.3 | Plus |
| Rok-PC | 1374 | CG9774-PC | 433..1135 | 708..1463 | 229 | 20.5 | Plus |
| Rok-PD | 1381 | CG9774-PD | 424..1126 | 708..1463 | 229 | 20.5 | Plus |
