BS31124.complete Sequence
2852 bp assembled on 2012-09-06
GenBank Submission: KX800785
> BS31124.complete
GAAGTTATCAGTCGACATGAGTCGCGATAGTGATCCCATGAAATGGTACC
ACGGCAACCTGTCCCGCGAGGCAGCCGACGAACTGCTAAAGCAGGGTTAC
GAGGACGGGACATTTCTGGTGCGCGAGAGCAGCACAGCGGCCGGGGACTT
TGTGCTGAGCCTGCTCTGCCAGGGTGAGGTGTGTCACTACCAGGTGCGGC
GACATGGCGGCGAGGACGCCTTCTTCTCCATCGACGACAAGGTACAGACG
AAGATACTGCACGGCCTGGACACGCTCGTCGACTACTATCAGCAGGCGGC
CAATGGTCTGCCCACCAAGCTGACGGTGCCCTTGATCCGCGATCTGCCGC
CGCACAACACTCGCAGCCACGGAGTGACCAATCTGCTGCATCGCGCCACA
AGCAAAAACGAGAGCAAGGTCGTCTTCGAGCTGCTCAAGTGCGGCTATCG
GAATTTCGATGCCAAGAATCAGGATGGACAGACGGCTCTGCATCTGGCTG
CCCTCCACTCGGACGAGGATATACTGAAACACCTGTTGAATGCAAAGGTC
CAGGTCAACAGCTCCGACTCCTTTGGCTGCCAGCCATTGCACTACGCCGC
TCGCTCCAAACCGGCCAGTTTCATACGCACACTCATCTCGGCACAGGCCA
ATGTCCAGGGCAGGAACATCGACAACGGCTATGTGCCGCTGCATGAGGCT
GCCAAGCACGGCAACCTGGAGGCTGTGCAAGAGCTGCTCCTGGCTGAGGC
TCCGCCGTTGCCCAGAACAAGTTCGGGTGAATTTCCATTCGATCTGGCCA
AGGAAGCGGGCCAAACGGCAGTAGAAGAATTCCTGCTCAACTACAAGCTC
CCACCGGCGAATACCACAAGAGACCAGTGGTATCATGGCACTCTGACCAG
AGAAGAGGCAGTAGCCATACTAAAAAAGCATGCCAAGGAGCTATTGGCCA
AGCAACCTGAAGTAGACACCTCCGGCTGCTTTCTGGTTCGCTACTCCGAG
TCGCCGGCGGCCTCGGGGTTGGTTTTAACATTGCTTTGTGATCAGGTGGT
CAAGAATTTTCGTATTTCGCAAGCTGATCTCTACCAGAATGGTAACAAGG
TGCAGTCGGGCGGGTCCAAGTTTCTGTACATTGATGACGGTCCCTACTGG
CCAAGCGTGGAACATCTAATAGCCCACTTCATGCGTTTCTCGTACGGGTT
GCCAGTGAGTCTCAAGTATCCGGTTCCGCCACAGCCCAAGCCAGAGGTGC
CATCGTTTGCCACAATACCTCGATCTAATATGAAGCCAAAAGCAGCATCG
CCCGCTACCCCGCCCACTCCAGTATCGCCACATTCGCATCATCAACACCC
CCACGTTCCCGCCCTGACCATAACGAAGAAAAAGCAGAAGGAGAACAGTA
GCTCAATGTTCAACACTCTGCGACTGACGAGTCCGAAGAAAGCGCTATTC
GACATGAACAGCCTGCGCAAAAACAAGTCCAAGGGCAAACGCAGTGACTC
CGAGAGCAGTGTGAGTGGTTCTTTGGCCGGAACGGAGCAGGAGCTGCAGG
CAGCGGCACCCATGCTGAAGAGCCTGTCGTTCTCGACGGAGTTCTCAACG
TTTAACGCGGATGGCGTAACTGGTTCTGGTGCCGCCGCTGCTGGCGAAGT
GTACAACGTGCCCAGGAACAACACGCCCATTGAGATTGACCTGCCACCGA
TTGCCCAAAAGACTGAAGCCGAAGTTGAGTATTTCACGAAAAGTGATGTG
GCCATAGAGCGCGAGCGAGCAGGTCAGTGGATCGGCAACGGCTACCAGCC
CACAATGGACGTGCTATCCCTGTTGGATCAGCAGATCAAGGCGCCCGCCG
TGGCGCGACTAAACTCGCTTGGTCCGAACGCATCAACGGAAAGTGAGATG
GCCAGCTATCTTCATCGCAAGTGCAGCGGTACGCCAAGCACACCAAGCGC
CACTGAGGTGGAGGCCGCCAAGCTGAGATTCTTTATTGAGCCAGAAAAAC
TAGTGCTGGATAGAGAGATCGGGCACGGGGAATTCGGTTCGGTGCACAGT
GGATGGCTGCTGAGAAAGAGCGGTGCCGGCGAGGAATCGCGCTTGGAGGT
GGCCATTAAGATGCTTAGCGACGAGCACAGCAACAAACAGGAGTTCCTGC
GCGAAGCATCAGTTATGATGCGGCTGGAGCACAAGTGCATTGTGCGATTG
ATTGGCATTGCGAAGGGTGAAATGCTAATGATGGTTCAAGAGCTAGCTCC
GTTGGGCTCCATGCTGCAGTACATACTGGATCATGGTCATGAGATCACGG
CCAATGCGGAGCTGAAAGTTTGGGCGTCACAGATTGCGTGTGGCATGCAT
TATCTGGAATCACAGCATTTTGTACACCGCGATCTGGCCGCCAGAAATAT
ATTGCTGACCGCACGCCACCAGGCGAAGATCAGTGACTTCGGCATGTCGC
GATCACTGAGACCCGGTAGCACGGAATACCAATTCACCCAGGGCGGACGT
TGGCCCATCCGCTGGTACGCACCGGAAAGCTTCAACCTGGGCATCTTCTC
GCACGCCAGTGATGTGTGGTCCTTTGGCGTGACCATCTGGGAGATGTTTT
CCCTCGGCGCACCGCCATATGGGGAAATATCTAATGTCGATGCCATCAAG
TTGGTGGACAGTGGCGAACGCCTGCCGCAGCCCAATCTCTGTCCAGCTTA
CATCTATGCCGTGATGCAGAGCTGCTGGAAGGAACGACCCAAAGATCGGC
CAACCTTTGTCTATCTCACCGAGTTTTTCGCCCGCGATCCTGATTACCAA
AACCTGCCGGAATTGGTGCAAACGGTTCACATTTAAAAGCTTTCTAGACC
AT
BS31124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shark-RA | 2820 | CG18247-PA | 1..2820 | 17..2836 | 14100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shark-RA | 3176 | CG18247-RA | 58..2877 | 17..2836 | 14100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16200277..16201506 | 2343..1114 | 6150 | 100 | Minus |
| 2R | 25286936 | 2R | 16201560..16202081 | 1114..593 | 2610 | 100 | Minus |
| 2R | 25286936 | 2R | 16202144..16202641 | 592..95 | 2490 | 100 | Minus |
| 2R | 25286936 | 2R | 16199725..16200219 | 2836..2342 | 2475 | 100 | Minus |
| 2R | 25286936 | 2R | 16202747..16202827 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:56:53 has no hits.
BS31124.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 13:03:54 Download gff for
BS31124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shark-RA | 57..2874 | 17..2834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:58 Download gff for
BS31124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shark-RA | 58..2875 | 17..2834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:36 Download gff for
BS31124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shark-RA | 58..2875 | 17..2834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:36 Download gff for
BS31124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16199727..16200218 | 2343..2834 | 100 | <- | Minus |
| 2R | 16200278..16201505 | 1115..2342 | 100 | <- | Minus |
| 2R | 16201560..16202081 | 593..1114 | 100 | <- | Minus |
| 2R | 16202144..16202640 | 96..592 | 100 | <- | Minus |
| 2R | 16202749..16202827 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:58 Download gff for
BS31124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12087232..12087723 | 2343..2834 | 100 | <- | Minus |
| arm_2R | 12087783..12089010 | 1115..2342 | 100 | <- | Minus |
| arm_2R | 12089065..12089586 | 593..1114 | 100 | <- | Minus |
| arm_2R | 12089649..12090145 | 96..592 | 100 | <- | Minus |
| arm_2R | 12090254..12090332 | 17..95 | 100 | | Minus |
BS31124.pep Sequence
Translation from 16 to 2835
> BS31124.pep
MSRDSDPMKWYHGNLSREAADELLKQGYEDGTFLVRESSTAAGDFVLSLL
CQGEVCHYQVRRHGGEDAFFSIDDKVQTKILHGLDTLVDYYQQAANGLPT
KLTVPLIRDLPPHNTRSHGVTNLLHRATSKNESKVVFELLKCGYRNFDAK
NQDGQTALHLAALHSDEDILKHLLNAKVQVNSSDSFGCQPLHYAARSKPA
SFIRTLISAQANVQGRNIDNGYVPLHEAAKHGNLEAVQELLLAEAPPLPR
TSSGEFPFDLAKEAGQTAVEEFLLNYKLPPANTTRDQWYHGTLTREEAVA
ILKKHAKELLAKQPEVDTSGCFLVRYSESPAASGLVLTLLCDQVVKNFRI
SQADLYQNGNKVQSGGSKFLYIDDGPYWPSVEHLIAHFMRFSYGLPVSLK
YPVPPQPKPEVPSFATIPRSNMKPKAASPATPPTPVSPHSHHQHPHVPAL
TITKKKQKENSSSMFNTLRLTSPKKALFDMNSLRKNKSKGKRSDSESSVS
GSLAGTEQELQAAAPMLKSLSFSTEFSTFNADGVTGSGAAAAGEVYNVPR
NNTPIEIDLPPIAQKTEAEVEYFTKSDVAIERERAGQWIGNGYQPTMDVL
SLLDQQIKAPAVARLNSLGPNASTESEMASYLHRKCSGTPSTPSATEVEA
AKLRFFIEPEKLVLDREIGHGEFGSVHSGWLLRKSGAGEESRLEVAIKML
SDEHSNKQEFLREASVMMRLEHKCIVRLIGIAKGEMLMMVQELAPLGSML
QYILDHGHEITANAELKVWASQIACGMHYLESQHFVHRDLAARNILLTAR
HQAKISDFGMSRSLRPGSTEYQFTQGGRWPIRWYAPESFNLGIFSHASDV
WSFGVTIWEMFSLGAPPYGEISNVDAIKLVDSGERLPQPNLCPAYIYAVM
QSCWKERPKDRPTFVYLTEFFARDPDYQNLPELVQTVHI*
BS31124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shark-PA | 939 | CG18247-PA | 1..939 | 1..939 | 4910 | 100 | Plus |
| Ack-like-PA | 1337 | CG43741-PA | 70..407 | 600..937 | 498 | 35.5 | Plus |
| Ack-like-PD | 1338 | CG43741-PD | 70..407 | 600..937 | 498 | 35.5 | Plus |
| Ack-like-PC | 1475 | CG43741-PC | 70..407 | 600..937 | 498 | 35.5 | Plus |
| Ack-like-PE | 1495 | CG43741-PE | 70..407 | 600..937 | 498 | 35.5 | Plus |
