BS31125.complete Sequence
2462 bp assembled on 2012-09-25
GenBank Submission: KX804740
> BS31125.complete
GAAGTTATCAGTCGACATGAGTCGCATTTTATTTATTTTGTTGCTACTTA
TTGTGACGCAACTGAGCGAGTTGCAGGCGGCAGCATTTTCTGTGCGCCAA
AATCGTTTTGATGAAGTTCCTGATTTGCAGACTCCTGCACCTCTGGCCAC
TTCCACTGAATCTTCTAAGAAACCCGAAAAAGCTACCAGTGGTCTGCTGA
AAAAATGCCTTCCCTGCAGCGATGGTATAAGATGCGTGCCCCAAATCCAG
TGTCCCGCCCACGTTCGCATGGAAAGCCATGAAAAGCCCCAAATTTGCGA
TCTCCCGGCTGGAAAATTCGGCTACTGCTGCGAGACTGGACAGAATCACA
CTGCTCCCAAGCCGGAGACCTCTCCCAAGGAGCGTCGATCCGGATTTCCC
ACCATTCTGTCACCCGCAGTTTTGGATGAGGCGCGTCGCAATTTCGAGCA
CTTGATGCATGGAGTTGCGCAGATTCCGGTGCGCCGTGGCTTTCCCGATT
TTGCCCATGGCCTGGTTTTCCACTCGACGGCCAAGGATGACCTTCACAAC
TTCGCCATATCGAACAGTGCCATTGAACAAGTGATGACCACCCAGTTGTT
TGGGAAGAAGGAGCAGGTGCCCGTAGAAGATTTCATCACCAACAATGTGC
CCATCAAGTTCACTGAGACTCCGCTGGCACACCATTGCCAACCGCCCCCA
GTTTGCGGCAATATTCGGTCTGTTTATCGCAGCATGGACGGCACTTGCAA
TAATCCAGAACCACAGAGATCTCTGTGGGGTGCTGCTGGTCAACCGATGG
AGCGCATGCTGCCCCCCGCCTATGAAGATGGTATCTGGACACCGCGTGCT
CACTCTTCTGACGGCACTCCGCTGTTGGGCGCCCGTAAAATCTCACGAAC
TCTGCTCTCGGACGTTGATCGTCCTCATCCTAAGTACAATCTTATGGTGA
TGCAGTTTGGACAAGTCTTGGCTCATGACATTTCACAAACTTCTTCAATC
CGGCTCGAGGATGGCAGCCTGGTGCAATGCTGTTCCCCCGAAGGAAAAGT
AGCTCTCAGTCCTCAGCAAAGCCATTTTGCCTGCATGCCGATCCACGTTG
AGCCGGATGATGAGTTCTTTTCAGCTTTTGGAGTGCGTTGTTTGAACTTT
GTTAGATTGTCTTTGGTGCCTAGTCCCGACTGCCAACTCAGTTACGGCAA
ACAGCTGACCAAGGTGACACACTTTGTGGACGCCTCGCCGGTCTATGGAT
CGAGTGATGAAGCATCTCGTAGTTTAAGAGCCTTCCGCGGGGGCCGATTG
CGAATGATGAATGATTTTGGTCGTGATCTGCTGCCCTTGACAAACGACAA
GAAGGCATGTCCCAGTGAGGAAGCCGGAAAGTCCTGTTTCCATTCGGGAG
ATGGCCGAACAAACCAGATCATATCCCTGATCACCCTTCAAATTCTGCTT
GCCCGAGAGCACAACCGTGTAGCCGGTGCACTACACGAACTAAATCCGTC
AGCCAGCGATGAAACGCTTTTCCAGGAAGCTCGACGCATCGTCATTGCCG
AGATGCAGCATATCACCTACAACGAGTTCTTGCCCATTATAATAGGACCA
CAACAGATGAAGCGCTTCCGTTTGGTGCCGCTTCACCAGGGCTATTCCCA
TGACTACAATGTTAATGTGAATCCAGCTATCACAAACGAATTCTCGGGCG
CTGCCTATCGCATGGGCCATTCCAGTGTTGATGGTAAGTTCCAAATCCGC
CAGGAACATGGTCGCATCGATGAAGTGGTCAATATACCAGATGTGATGTT
CAATCCTTCACGGATGCGCAAGCGCGAGTTTTACGACGACATGCTGCGCA
CTCTATACAGCCAACCCATGCAGCAGGTGGACAGCTCAATCAGCCAGGGA
CTCAGTCGCTTTCTGTTTCGCGGGGACAATCCGTTTGGCCTGGATCTAGC
TGCCATTAACATTCAGCGAGGACGCGACCAGGGTCTGCGTAGCTACAACG
ATTACTTGGAATTGATGGGTGCACCCAAACTGCATAGCTTTGAGCAGTTC
CCAATTGAAATTGCCCAGAAGCTGTCGCGCGTTTACCGTACACCCGATGA
CATTGACCTCTGGGTGGGTGGCCTTCTGGAGAAGGCAGTCGAGGGTGGTG
TAGTGGGAGTGACCTTTGCTGAGATCATAGCCGATCAGTTTGCACGCTTC
AAGCAGGGCGATCGCTACTACTATGAGTACGACAATGGTATCAATCCTGG
CGCATTCAACCCTCTGCAGCTGCAGGAAATTCGCAAGGTAACGTTGGCCC
GACTCCTGTGTGACAACTCCGATCGCCTTACGCTCCAAGCTGTGCCATTG
GCTGCATTCGTACGTGCTGATCATCCCGGCAACCAAATGATTGGCTGTGA
TGATCCCAACCTGCCTTCTGTTAACTTGGAGGCATGGCGTGCTTGAAAGC
TTTCTAGACCAT
BS31125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxt-RB | 2430 | CG7660-PB | 1..2430 | 17..2446 | 12150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxt-RB | 2716 | CG7660-RB | 118..2547 | 17..2446 | 12150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17720029..17720819 | 181..971 | 3955 | 100 | Plus |
| 3R | 32079331 | 3R | 17720950..17721378 | 970..1398 | 2145 | 100 | Plus |
| 3R | 32079331 | 3R | 17721505..17721833 | 1397..1725 | 1645 | 100 | Plus |
| 3R | 32079331 | 3R | 17722345..17722664 | 2060..2379 | 1600 | 100 | Plus |
| 3R | 32079331 | 3R | 17721893..17722069 | 1724..1900 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 17719571..17719736 | 17..182 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 17722132..17722290 | 1901..2059 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 17722719..17722786 | 2379..2446 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:07:30 has no hits.
BS31125.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 10:32:18 Download gff for
BS31125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxt-RB | 120..2548 | 17..2445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:21 Download gff for
BS31125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxt-RB | 118..2546 | 17..2445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:37 Download gff for
BS31125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxt-RB | 118..2546 | 17..2445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:37 Download gff for
BS31125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17719571..17719736 | 17..182 | 100 | -> | Plus |
| 3R | 17720031..17720818 | 183..970 | 100 | -> | Plus |
| 3R | 17720951..17721377 | 971..1397 | 100 | -> | Plus |
| 3R | 17721506..17721833 | 1398..1725 | 100 | -> | Plus |
| 3R | 17721895..17722069 | 1726..1900 | 100 | -> | Plus |
| 3R | 17722132..17722290 | 1901..2059 | 100 | -> | Plus |
| 3R | 17722345..17722664 | 2060..2379 | 100 | -> | Plus |
| 3R | 17722720..17722785 | 2380..2445 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:21 Download gff for
BS31125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13545293..13545458 | 17..182 | 100 | -> | Plus |
| arm_3R | 13545753..13546540 | 183..970 | 100 | -> | Plus |
| arm_3R | 13546673..13547099 | 971..1397 | 100 | -> | Plus |
| arm_3R | 13547228..13547555 | 1398..1725 | 100 | -> | Plus |
| arm_3R | 13547617..13547791 | 1726..1900 | 100 | -> | Plus |
| arm_3R | 13547854..13548012 | 1901..2059 | 100 | -> | Plus |
| arm_3R | 13548067..13548386 | 2060..2379 | 100 | -> | Plus |
| arm_3R | 13548442..13548507 | 2380..2445 | 100 | | Plus |
BS31125.pep Sequence
Translation from 16 to 2445
> BS31125.pep
MSRILFILLLLIVTQLSELQAAAFSVRQNRFDEVPDLQTPAPLATSTESS
KKPEKATSGLLKKCLPCSDGIRCVPQIQCPAHVRMESHEKPQICDLPAGK
FGYCCETGQNHTAPKPETSPKERRSGFPTILSPAVLDEARRNFEHLMHGV
AQIPVRRGFPDFAHGLVFHSTAKDDLHNFAISNSAIEQVMTTQLFGKKEQ
VPVEDFITNNVPIKFTETPLAHHCQPPPVCGNIRSVYRSMDGTCNNPEPQ
RSLWGAAGQPMERMLPPAYEDGIWTPRAHSSDGTPLLGARKISRTLLSDV
DRPHPKYNLMVMQFGQVLAHDISQTSSIRLEDGSLVQCCSPEGKVALSPQ
QSHFACMPIHVEPDDEFFSAFGVRCLNFVRLSLVPSPDCQLSYGKQLTKV
THFVDASPVYGSSDEASRSLRAFRGGRLRMMNDFGRDLLPLTNDKKACPS
EEAGKSCFHSGDGRTNQIISLITLQILLAREHNRVAGALHELNPSASDET
LFQEARRIVIAEMQHITYNEFLPIIIGPQQMKRFRLVPLHQGYSHDYNVN
VNPAITNEFSGAAYRMGHSSVDGKFQIRQEHGRIDEVVNIPDVMFNPSRM
RKREFYDDMLRTLYSQPMQQVDSSISQGLSRFLFRGDNPFGLDLAAINIQ
RGRDQGLRSYNDYLELMGAPKLHSFEQFPIEIAQKLSRVYRTPDDIDLWV
GGLLEKAVEGGVVGVTFAEIIADQFARFKQGDRYYYEYDNGINPGAFNPL
QLQEIRKVTLARLLCDNSDRLTLQAVPLAAFVRADHPGNQMIGCDDPNLP
SVNLEAWRA*
BS31125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxt-PB | 809 | CG7660-PB | 1..809 | 1..809 | 4271 | 100 | Plus |
| Pxd-PC | 688 | CG3477-PC | 94..671 | 226..807 | 944 | 37.6 | Plus |
| Pxd-PB | 690 | CG3477-PB | 96..673 | 226..807 | 944 | 37.6 | Plus |
| Pxd-PA | 690 | CG3477-PA | 96..673 | 226..807 | 944 | 37.6 | Plus |
| CG5873-PA | 753 | CG5873-PA | 155..725 | 237..807 | 926 | 37 | Plus |
