BS31127.complete Sequence
2012 bp assembled on 2012-09-25
GenBank Submission: KX803509
> BS31127.complete
GAAGTTATCAGTCGACATGATCCTGCTATCCGGACTTCTGCCGCTCCTGG
GCGTCGTTCTCTTGCACCTTGCGACCCCGACACAGGCCTTCTATCTGCCC
GGACTGGCACCGGTCAATTTCTGCAAGAAAACCGACGTCTCATCCACATG
CAAGTCGGAAATCTTGTTGTACGTCAACCGCTTAAACACTGAGGAATCCG
TAATACCCTATGAGTACCATCACTTCGACTTTTGTTTGGGCGAGGAGCAG
AACTCACCGGTGGAGAATCTGGGACAGGTTGTGTTCGGAGAGCGAATTCG
TCCAGGACCCTATAAAATTCAGTTCTTGGAAAACCAGCAATGTGCGACCA
CCTGTGTCAAGACTTACAAAGGAGACGATCCGGCTAGCAACCGTCGTATG
ATGGTTCTTAAGAAAGGAATCAGCTTGAACTACCAACATCATTGGATTGT
GGACAACATGCCGGTTACATGGTGCTACCCACTGGAGAACGGCAAGCAAT
ACTGCGGAATTGGTTTTCCCATGGGTTGTCTAGTTCGCAGTGATGGCGAG
GGTTGTCCCATCAACTCTATATATAACCAGCCAATGCATTATTATCCATT
CAACCATGTGGATCTCGAGATTACTTATCACAGTGGACAGTCGGAGGACT
GGGGAATTCAGTTCGGCAACAGTGGACGCATAATCTCTGTAAAAGTGACT
CCCAAATCTATTAAGCACACCGATAAGGAAAACCCCAATTGCTTGAGCAC
AGAGCCACTGGCAATCAGTGAGAACTCTTTAAAGGCTGGAGAACAGCTGG
AAATTGTCTACACGTACAGCGTGAAGTTTGTAAAGAACGATTCTATCAAA
TGGTCATCACGTTGGGACTACATTTTGGAATCCATGCCGCACACGAATAT
CCAGTGGTTCTCCATTCTCAACTCCCTGGTTATTGTCCTTTTCCTGAGTG
GCATGGTGGCAATGATAATGCTGCGTACGTTGCACAAAGATATAGCCCGC
TATAATCAGATGGATAGCGGTGAGGATGCCCAGGAGGAGTTTGGCTGGAA
ACTGGTACATGGTGATGTGTTCAGGCCGCCGCGGAAGGGCATGCTGTTGT
CGGTATTCCTGGGTTCGGGTGTACAGGTGCTTGTGATGGCCATGATCACC
TTAGCATTTGCCTGCCTGGGATTCTTGTCCCCAGCCAATCGGGGAGCCCT
GATGACCTGTTCCATGGTCTTGTTTGTTTCGTTGGGTACACCGGCTGGTT
ACGTGTCTGCGCGTATCTACAAGAGTTTCGGTGGGCTGAAATGGAAGAGT
AATGTCATCCTTACCTCGATCGTTTGCCCTGGTGTGGTCTTCTCATTGTT
CTTCGTCATGAACCTGGTGCTGTGGGGGGAAAATAGCTCCGGAGCTGTGC
CATTTAGCACGCTAATTGCTCTGCTTGCCTTGTGGTTTGGCGTCTCTGTG
CCACTAACCTTTGTAGGAGCTTACTTTGGATTCCGCAAGCGCGCATTGGA
GCACCCTGTGCGTACCAACCAGATTCCCCGTCAGATTCCGGACCAATCGA
TCTACACACAGCCTATTCCTGGAATCGTTATGGGCGGCGTTCTACCCTTT
GGCTGCATCTTCATTCAGCTGTTCTTTATCCTGAGCTCGCTGTGGTCCAG
CCAGATTTACTACATGTTCGGTTTTCTGTTCCTGGTCTTTGTCATATTGG
TCATCACATGCTCGGAGACCACCATTCTGCTGTGCTACTTTCACTTGTGT
GCGGAGGACTATCACTGGTGGTGGCGCTCCTTCCTGACGTCCGGCTTCAC
AGCAGTCTATCTGTTCATATACTGCTGCCACTACTTCGTCACAAAGCTTT
CGATCAAGGACAGTGCCTCGACGTTCCTGTATTTCGGCTACACGGCCATT
ATGGTATTCCTGTTCTTCTTGCTGACCGGCACCATCGGGTTCTTCGCGTG
CTTTTGGTTCATACGTAAGATCTACAGTGTTGTCAAGGTGGATTAAAAGC
TTTCTAGACCAT
BS31127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9318-RB | 1980 | CG9318-PB | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| CG9318-RA | 1980 | CG9318-PA | 1..1980 | 17..1996 | 9900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9318-RB | 2810 | CG9318-RB | 242..2227 | 12..1997 | 9915 | 99.9 | Plus |
| CG9318-RA | 2581 | CG9318-RA | 242..2227 | 12..1997 | 9915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20731778..20732760 | 1332..350 | 4915 | 100 | Minus |
| 2L | 23513712 | 2L | 20730999..20731503 | 1997..1493 | 2525 | 100 | Minus |
| 2L | 23513712 | 2L | 20732822..20733018 | 349..153 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 20731563..20731724 | 1493..1332 | 810 | 100 | Minus |
| 2L | 23513712 | 2L | 20733926..20734068 | 154..12 | 700 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:07:33 has no hits.
BS31127.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 10:32:19 Download gff for
BS31127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9318-RA | 248..2225 | 17..1994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:24 Download gff for
BS31127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9318-RA | 247..2224 | 17..1994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:39 Download gff for
BS31127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9318-RA | 247..2224 | 17..1994 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:39 Download gff for
BS31127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20731002..20731503 | 1493..1994 | 100 | <- | Minus |
| 2L | 20731564..20731723 | 1333..1492 | 100 | <- | Minus |
| 2L | 20731778..20732760 | 350..1332 | 100 | <- | Minus |
| 2L | 20732822..20733016 | 155..349 | 100 | <- | Minus |
| 2L | 20733926..20734063 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:24 Download gff for
BS31127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20731564..20731723 | 1333..1492 | 100 | <- | Minus |
| arm_2L | 20731002..20731503 | 1493..1994 | 100 | <- | Minus |
| arm_2L | 20731778..20732760 | 350..1332 | 100 | <- | Minus |
| arm_2L | 20732822..20733016 | 155..349 | 100 | <- | Minus |
| arm_2L | 20733926..20734063 | 17..154 | 100 | | Minus |
BS31127.pep Sequence
Translation from 16 to 1995
> BS31127.pep
MILLSGLLPLLGVVLLHLATPTQAFYLPGLAPVNFCKKTDVSSTCKSEIL
LYVNRLNTEESVIPYEYHHFDFCLGEEQNSPVENLGQVVFGERIRPGPYK
IQFLENQQCATTCVKTYKGDDPASNRRMMVLKKGISLNYQHHWIVDNMPV
TWCYPLENGKQYCGIGFPMGCLVRSDGEGCPINSIYNQPMHYYPFNHVDL
EITYHSGQSEDWGIQFGNSGRIISVKVTPKSIKHTDKENPNCLSTEPLAI
SENSLKAGEQLEIVYTYSVKFVKNDSIKWSSRWDYILESMPHTNIQWFSI
LNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSGEDAQEEFGWKLVHGD
VFRPPRKGMLLSVFLGSGVQVLVMAMITLAFACLGFLSPANRGALMTCSM
VLFVSLGTPAGYVSARIYKSFGGLKWKSNVILTSIVCPGVVFSLFFVMNL
VLWGENSSGAVPFSTLIALLALWFGVSVPLTFVGAYFGFRKRALEHPVRT
NQIPRQIPDQSIYTQPIPGIVMGGVLPFGCIFIQLFFILSSLWSSQIYYM
FGFLFLVFVILVITCSETTILLCYFHLCAEDYHWWWRSFLTSGFTAVYLF
IYCCHYFVTKLSIKDSASTFLYFGYTAIMVFLFFLLTGTIGFFACFWFIR
KIYSVVKVD*
BS31127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9318-PB | 659 | CG9318-PB | 1..659 | 1..659 | 3528 | 100 | Plus |
| CG9318-PA | 659 | CG9318-PA | 1..659 | 1..659 | 3528 | 100 | Plus |
| TM9SF4-PB | 630 | CG7364-PB | 9..630 | 9..659 | 1356 | 41.8 | Plus |
| TM9SF4-PA | 630 | CG7364-PA | 9..630 | 9..659 | 1356 | 41.8 | Plus |
| CG10590-PA | 592 | CG10590-PA | 41..592 | 46..659 | 767 | 29.6 | Plus |
