BS31142.complete Sequence
1952 bp assembled on 2012-07-30
GenBank Submission: KX802035
> BS31142.complete
GAAGTTATCAGTCGACATGGATGCACAGCCGTCGTATCCCGATTTGGCGA
CCCTGTGCCGCCTTTGCCTCAAGGAGCACCAGGATGCGTACGCGATCTTC
GACGAGGACGACACCCAGCTCTCGATACCCGTGCGCCTGATGGCCTGCGT
CGCACTGGACGCCAAGGCGACGGATACTCTGCCGAAGAGGATCTGCCAGG
AGTGCCGCTATCAGCTGGAGAAGTCATTCCTGTTCCGGCAGCGCTGCCAA
TGGGCGGAGAAGAAGCTTCGCAAGCATATCCGACTTCTGGGTCTCGGGAA
GCGAAGCCGCGTCTTCTCCAAGGATCCGGACGATTATGACGAGGACGAGC
TGGAGTTCGAGGACTCTATTGCCTTCATCGAGGTGCAGGACAAAGTGCGC
AAGCTTGAGGACGAAAAGTGGCGAGAAGATTTTAAGGAAGAACAGGCGGC
GGAAATGCACAAACGGCTGGTCAAATCTCGTCTAGAACTTCGAGCGAAAC
TGACCACCGAACTGCGCAAGGAACTAGCGGAGGAGGTGCGCAGTGAGGTT
CGCAAGGAGCTGGCCGAGGAGGTGCGCAGCCAGGTTAGAGATGACCTGCG
AAACGAGGTGAGCGAGGACATAAGAAAAGAGCAGCTGGCCATGCTGTTGG
GCGAATTGGAGGTGTATCTTACCGAGAAAAAGGCCGGTCGGTGGGAGTCT
TTGGATGGGTCCGAACCAGAGACCAAGCCGCAAGTCAAGGAAGATGCCTC
CCCTTCTAGGTCAAAAACTAAAGCTCTTCCAAAGCGACGACCCAGCTTGG
TCGACGCCAATCTAAAGGCGACAGAGGCCAGGAAGGATGCAAAAGAAGAG
GAATTCATATTGGGCTGCAATACCGACCCCGCAAATAATAGCGATGTAAA
CATAGATGGCCTCGAACTGGACGAGGAAGTGCCCGCGGAAAGCGGTGAAG
ACTTCAGGGAAATCAACATGGTTGGATCAGATGTAGTGCACACAGACAAT
GGAGAGATTTACATCATAAACTCTGCCAGCTCAGAGGATCAAAACCAGGA
CTCCACTCCCGAATTTGACCAGGACAACGGAATCACCTCCTATAACATCA
AAGAAGACGGCGAAATTCAGTTCAGTGGCGAAAAGCCAGAGGAAATCGAA
GACGTGGTCGTGTTTAATCTGGGCGAGGAGATATCTCAGGAGCAACAGGT
CTTCAGCTTCCATGAAAATGTCATTATAGTGGAAAAAGAACAGAACGATA
GAGATGAGCAGACGCCCCTCAAACGAAAGAGATCGAGTGAGTTGGTGTTC
AAGCAGGAGTCCAGTTGTCCTCAACCAAAAACCGGTCGAATTACGGACAC
GGTGAAGTCGTTCCAGTGCCATTTGTGCCCGGTGGCATTTCCTACGCAGA
AACTTCTGACGCGCCACCACAACACCCACATTAAGGGACTGAAAAGTGGA
AAGGGCGGCACGCTCAAGTGTCCCAGCTGCGCACTGCAACTGTCGTGCGC
CAGCTCGCTCAAACGCCACATGATTATCCACACGGGCCTGAAACCCTTCA
AGTGCAGCGAGTGCGAACTGTCCTTCTCCCAGCGCGAAGTGCTCAAGCGT
CACATGGACACCCATACGGGAGTAAAGCGCCATCAGTGCCCCCAATGCTC
GAGCTGCTTTGCCCAGAAGTCCAACCTGCAGCAGCACATTGGCCGCGTGC
ATATGGGCAACTCTCGGACGCACAAGTGTCATCTGTGTCATCGTAGCTTC
AATCATGTTTCGGGCCTCAGTCGCCATCTGGTCACCCACGCTGGCGTCAT
GTTCTCCTGCAAACAGTGCGGCCGTCAGTTTAACGATCGCAGTGCGGTCC
AGAGACATGTAACCACAATGCACAAGGTGAAGAACAAGCTCACAGACTAC
ATATCCGAGACGAACGAGTTTCAAGCTGTGGCCTAGAAGCTTTCTAGACC
AT
BS31142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31365-RA | 1920 | CG31365-PA | 1..1920 | 17..1936 | 9600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31365-RA | 2335 | CG31365-RA | 80..2002 | 16..1938 | 9615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23125262..23126343 | 1097..16 | 5410 | 100 | Minus |
| 3R | 32079331 | 3R | 23124295..23125002 | 1938..1231 | 3540 | 100 | Minus |
| 3R | 32079331 | 3R | 23125061..23125195 | 1232..1098 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:04:11 has no hits.
BS31142.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:37 Download gff for
BS31142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31365-RA | 76..1995 | 17..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:57 Download gff for
BS31142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31365-RA | 81..2000 | 17..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:28 Download gff for
BS31142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31365-RA | 81..2000 | 17..1936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:28 Download gff for
BS31142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23124297..23125001 | 1232..1936 | 100 | <- | Minus |
| 3R | 23125062..23125195 | 1098..1231 | 100 | <- | Minus |
| 3R | 23125262..23126342 | 17..1097 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:57 Download gff for
BS31142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18950019..18950723 | 1232..1936 | 100 | <- | Minus |
| arm_3R | 18950784..18950917 | 1098..1231 | 100 | <- | Minus |
| arm_3R | 18950984..18952064 | 17..1097 | 100 | | Minus |
BS31142.pep Sequence
Translation from 16 to 1935
> BS31142.pep
MDAQPSYPDLATLCRLCLKEHQDAYAIFDEDDTQLSIPVRLMACVALDAK
ATDTLPKRICQECRYQLEKSFLFRQRCQWAEKKLRKHIRLLGLGKRSRVF
SKDPDDYDEDELEFEDSIAFIEVQDKVRKLEDEKWREDFKEEQAAEMHKR
LVKSRLELRAKLTTELRKELAEEVRSEVRKELAEEVRSQVRDDLRNEVSE
DIRKEQLAMLLGELEVYLTEKKAGRWESLDGSEPETKPQVKEDASPSRSK
TKALPKRRPSLVDANLKATEARKDAKEEEFILGCNTDPANNSDVNIDGLE
LDEEVPAESGEDFREINMVGSDVVHTDNGEIYIINSASSEDQNQDSTPEF
DQDNGITSYNIKEDGEIQFSGEKPEEIEDVVVFNLGEEISQEQQVFSFHE
NVIIVEKEQNDRDEQTPLKRKRSSELVFKQESSCPQPKTGRITDTVKSFQ
CHLCPVAFPTQKLLTRHHNTHIKGLKSGKGGTLKCPSCALQLSCASSLKR
HMIIHTGLKPFKCSECELSFSQREVLKRHMDTHTGVKRHQCPQCSSCFAQ
KSNLQQHIGRVHMGNSRTHKCHLCHRSFNHVSGLSRHLVTHAGVMFSCKQ
CGRQFNDRSAVQRHVTTMHKVKNKLTDYISETNEFQAVA*
BS31142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31365-PA | 639 | CG31365-PA | 1..639 | 1..639 | 3345 | 100 | Plus |
| CG44002-PA | 345 | CG44002-PA | 78..341 | 376..623 | 282 | 30 | Plus |
| CG2712-PA | 501 | CG2712-PA | 308..471 | 445..614 | 280 | 36 | Plus |
| Clamp-PA | 561 | CG1832-PA | 280..518 | 390..614 | 275 | 29.1 | Plus |
| CG5245-PA | 501 | CG5245-PA | 108..267 | 447..615 | 274 | 34.9 | Plus |
| CG5245-PA | 501 | CG5245-PA | 79..242 | 443..617 | 266 | 35.2 | Plus |
| CG5245-PA | 501 | CG5245-PA | 241..415 | 442..624 | 245 | 31.5 | Plus |
| CG5245-PA | 501 | CG5245-PA | 7..235 | 408..638 | 242 | 28.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 213..379 | 441..615 | 231 | 30.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 324..491 | 441..615 | 225 | 29.5 | Plus |
| CG2712-PA | 501 | CG2712-PA | 91..414 | 344..614 | 201 | 20.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 389..497 | 450..564 | 190 | 34.8 | Plus |
