BS31144.complete Sequence
2918 bp assembled on 2012-07-30
GenBank Submission: KX805891
> BS31144.complete
GAAGTTATCAGTCGACATGGCACGGTGGCTGCTTAACTCGTTTTCGCTGA
TCCTGCTCCTGGCAGTGTGCAGCCTACAGGCGCGCCTGATCCTTCCCTTA
TCCCTGGACGATGGACAGCTGGAGACCAAGGGAGCAGCCCTCTTTGCCAC
CTCCCGCGTGGATGATAATAGTGCCGGCAATTACCGACTGCCAAATACAA
CGGAACCGGAGTCCTACAACGTGGAACTCTGGACCAATGTCCATAATGGC
GATACCGAATTCAATGGCACCGTCAATATCGATATCCGGGTTTTGAACGA
GACATCGAATATTACGCTTCACTATCGCCAGACGTCGAATTTTGAAGCGA
CGATTATCAGCCGGGATGTGGCCACGCCCACGGCAATTCCACTCACTGTA
ACCCCCGAGTTGCAGCGCGAATTCCTCGTCCTTACGCAGACCACCGCTGG
TGAGGCATTTGGAGCCAACACCAACTGGACCATCACCATCAACTACACTG
GCATCCACCGATCTGATATGGGCGGTTTCTATATCTCCAGTTATACGGAC
GATGATGGCGAACAGCACTTCTTGGCCACCACGCAATTCGAGAGCACAAA
CGCCCGTCACGCGTTTCCCTGTTACGATGAGCCTGCCCGTAGAGCTAACT
TTACGATTACCATCCACCATGATCCCTCCTACACTGCCATCAGCAATATG
CCAGTAAACACCGCTGCCACCAGCTCGGGAGTCACTGCTTTCCAGACGAC
GCCAAAGATGTCCACCTACCTGGTGGCCTTCATCGTCTCCGATTTTGAGT
CCACCACCGGAGAACTGAATGGCATCCGCCAGCGGGTTTTCTCGCGCAAG
GGAAAGCAGGATCAGCAGGAATGGGCCCTTTGGTCCGGATTGCTTGTGGA
GTCCAGTCTGGCTAGCTACTTTGGGGTTCCCTTCGCCCTGCCCAAGCTAG
ATCAAGCTGGAATACCGGACTTCTCTGCCGGTGCCATGGAGAACTGGGGT
CTGGCCACCTATCGTGAGCAGTACATGTGGTGGAACAAGCAGAACTCCAC
GATCAACCTGAAGACGAACATTGCCAATATTATTGGACACGAGTACGCGC
ACATGTGGTTCGGCGATTTGGTATCTATCAAATGGTGGACCTATCTGTGG
CTCAAGGAGGGCTTTGCTACTCTCTTCTCGTACGAATCGAACGACATTGC
TTTCCCACTGTGGGACACCTATCAGATCTTCCACGTGAACGACTACAACA
GCGCTCTGCTTAACGACGCCCTGGCCTCGGCCGTTCCCATGACGCACTAC
GTTCAGACACCATCGGAGATCTCCAACAGGTATAACACCTTCTCGTACGC
CAAGCCCGCCAGTGTTCTGTACATGTTCAAGAACGCTTGGACGGACAAGG
TATTCCGCACTGGATTGAACAAATACCTGACCAAGAACCAATATACATCT
TGCGACGAATGGGATCTATTTGCGTCCTTCCAGGAATCGGCCGACGAGCT
GGGCTTTACGCTGCCCGCCAGTGTGGACGACATCTTCAGTAGCTGGTCCC
ACCAGGCTGGTTATCCCCTGCTCACAGTGACCCGTAATTACAATGCCGGC
ACTATAACGATCACCCAGAAGCGTTATGTGGCGAACAAAACTGATACAAA
TAGCGCAACTTGGTATGTGCCACTTAACTTTGCCACTGCCAACAAGTACG
ATTATCGTGACACGAGCGCCACACATTACTTGCTAAATGTGACGGAGACC
GTGATCTCAGATGTCGAGGCTTCCAGCGATGACTGGATAATCGTGAATAT
CCAGAACTCCGGCTATTACCGCACCCTGTACGATACGCAGAACTATGGTC
TAATTACGGCAGCTCTGAAGTCTCAGCCCTGGAGGTTCCATCCTCGTAAC
AGGGCACAACTGCTGTACGATACGTACATCTTTGTCAGCACCGATCGCCT
GAGCCACAGCATCCTGCTGGAGCTGCTGGGTTACCTGACTAATGAGCAGC
AGTATGCTCCTTGGTCCACTGCCAACACTATTCTGACCGTCTACGATCGT
TACTTGCGTGGCGATGATTCTTACTACAACTTCCAAGATTTCGTGAAGCG
CCTGATCGATCCCATCTTCGATAAAATCGGTGTAAACGAGATTCCCGGCG
AGCATTATCTGAACAACTATCTGCGCATCGTGCTGGTCAGCTTGGCCTGC
CAGGTGGGATCCGATGATTGCTATAACCAGTCGGCCAATAAATTATCCGA
GTACCTATACAATGGCACAGCCATTGAGGCCACTCTAAAGACTCAAGCCT
ACTGTGCTGGTCTCCGATCGACTACCAATGAAATCTATAGCAGAGTGCAG
TCCGATTTGCTCAGTTCCTCAGATTCCACCGATCGCAGCCTGTTCATCTC
CTCGTTGGGCTGCTCTGGAAGTACGAGCCAGCTGCTTGATTTCTTGAGAC
TATCCCTGGACACCAACAATAGCTTGAGCTACTCGGAGCGCACTTCCCTT
CTAAACTCGGCCTATTCCCGCAGTGAAATCGGTCTTACCGCTAGTTTGGA
ATTCCTGGAGAGCAACTGGGAGGCATATGCCAACCTTTCAGACTCTGCAA
AGCCCCTGGATGCTGCCCTGCGTGGCATTGCCACCTATGTGGTCAGTGAG
AAGCAAAAGACGAGGCTTAACGCTTTGGTGGATGTTGTGGAGGCTGATGG
ACCGAGTTATATCAATGATGATCTGAGCACCACCATTGACTCCAGAATCA
CATCCAACTTCGCTTGGTTGGAAGTTAATCGTGATCCAGTGCTCAACTGG
ATCGAGGATTCCTTAAAAGAGAACGGCAGTCCCTCTCTGACCTCATCCAT
CACCACGATCCTGGTCAGTGCGATGGCTCTGTTGCTATTCAGGCTATATT
AAAAGCTTTCTAGACCAT
BS31144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31343-RA | 2886 | CG31343-PA | 1..2886 | 17..2902 | 14430 | 100 | Plus |
| CG31233-RB | 2859 | CG31233-PB | 551..1152 | 573..1177 | 575 | 73.4 | Plus |
| CG31233-RA | 2859 | CG31233-PA | 551..1152 | 573..1177 | 575 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31343-RA | 3004 | CG31343-RA | 38..2925 | 15..2902 | 14440 | 100 | Plus |
| CG31233-RB | 3059 | CG31233-RB | 688..1289 | 573..1177 | 575 | 73.4 | Plus |
| CG31233-RA | 2945 | CG31233-RA | 574..1175 | 573..1177 | 575 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21747390..21748617 | 1438..2665 | 6140 | 100 | Plus |
| 3R | 32079331 | 3R | 21746470..21747187 | 720..1437 | 3590 | 100 | Plus |
| 3R | 32079331 | 3R | 21745303..21745855 | 15..567 | 2765 | 100 | Plus |
| 3R | 32079331 | 3R | 21748687..21748924 | 2665..2902 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 21746186..21746341 | 568..723 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 21750896..21751349 | 724..1177 | 545 | 74.7 | Plus |
Blast to na_te.dros performed 2014-11-28 12:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1189..1233 | 459..503 | 117 | 73.3 | Plus |
BS31144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:38 Download gff for
BS31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31343-RA | 37..2920 | 17..2900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:01 Download gff for
BS31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31343-RA | 40..2923 | 17..2900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:32 Download gff for
BS31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31343-RA | 40..2923 | 17..2900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:32 Download gff for
BS31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21748688..21748922 | 2666..2900 | 100 | | Plus |
| 3R | 21745305..21745855 | 17..567 | 100 | -> | Plus |
| 3R | 21746186..21746341 | 568..723 | 100 | -> | Plus |
| 3R | 21746474..21747187 | 724..1437 | 100 | -> | Plus |
| 3R | 21747390..21748617 | 1438..2665 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:01 Download gff for
BS31144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17571908..17572063 | 568..723 | 100 | -> | Plus |
| arm_3R | 17571027..17571577 | 17..567 | 100 | -> | Plus |
| arm_3R | 17572196..17572909 | 724..1437 | 100 | -> | Plus |
| arm_3R | 17573112..17574339 | 1438..2665 | 100 | -> | Plus |
| arm_3R | 17574410..17574644 | 2666..2900 | 100 | | Plus |
BS31144.pep Sequence
Translation from 16 to 2901
> BS31144.pep
MARWLLNSFSLILLLAVCSLQARLILPLSLDDGQLETKGAALFATSRVDD
NSAGNYRLPNTTEPESYNVELWTNVHNGDTEFNGTVNIDIRVLNETSNIT
LHYRQTSNFEATIISRDVATPTAIPLTVTPELQREFLVLTQTTAGEAFGA
NTNWTITINYTGIHRSDMGGFYISSYTDDDGEQHFLATTQFESTNARHAF
PCYDEPARRANFTITIHHDPSYTAISNMPVNTAATSSGVTAFQTTPKMST
YLVAFIVSDFESTTGELNGIRQRVFSRKGKQDQQEWALWSGLLVESSLAS
YFGVPFALPKLDQAGIPDFSAGAMENWGLATYREQYMWWNKQNSTINLKT
NIANIIGHEYAHMWFGDLVSIKWWTYLWLKEGFATLFSYESNDIAFPLWD
TYQIFHVNDYNSALLNDALASAVPMTHYVQTPSEISNRYNTFSYAKPASV
LYMFKNAWTDKVFRTGLNKYLTKNQYTSCDEWDLFASFQESADELGFTLP
ASVDDIFSSWSHQAGYPLLTVTRNYNAGTITITQKRYVANKTDTNSATWY
VPLNFATANKYDYRDTSATHYLLNVTETVISDVEASSDDWIIVNIQNSGY
YRTLYDTQNYGLITAALKSQPWRFHPRNRAQLLYDTYIFVSTDRLSHSIL
LELLGYLTNEQQYAPWSTANTILTVYDRYLRGDDSYYNFQDFVKRLIDPI
FDKIGVNEIPGEHYLNNYLRIVLVSLACQVGSDDCYNQSANKLSEYLYNG
TAIEATLKTQAYCAGLRSTTNEIYSRVQSDLLSSSDSTDRSLFISSLGCS
GSTSQLLDFLRLSLDTNNSLSYSERTSLLNSAYSRSEIGLTASLEFLESN
WEAYANLSDSAKPLDAALRGIATYVVSEKQKTRLNALVDVVEADGPSYIN
DDLSTTIDSRITSNFAWLEVNRDPVLNWIEDSLKENGSPSLTSSITTILV
SAMALLLFRLY*
BS31144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31343-PA | 961 | CG31343-PA | 1..961 | 1..961 | 5024 | 100 | Plus |
| CG31233-PB | 952 | CG31233-PB | 10..952 | 8..958 | 2395 | 49.9 | Plus |
| CG31233-PA | 952 | CG31233-PA | 10..952 | 8..958 | 2395 | 49.9 | Plus |
| CG31198-PA | 940 | CG31198-PA | 8..938 | 12..956 | 1045 | 28.4 | Plus |
| CG31445-PB | 927 | CG31445-PB | 26..847 | 55..852 | 1034 | 30.8 | Plus |
