BS31146.complete Sequence
2786 bp assembled on 2012-07-30
GenBank Submission: KX803689
> BS31146.complete
GAAGTTATCAGTCGACATGCCTTCTTCATTGTGTGAAGCTCTCACAAATT
CTTCAATCAGTTTCGATTATCAAAAAGAAGATGATTGGATTACGAGTGGA
AAGCTTGGTTCGCGAGAAGCAGTTTTGGTTTTCAGAACGAATATTCTTAA
TCCGAAAATCCGGAAAACATTGTCTGAGAAGTCCTCTGCACAAGTGTTAA
CGGACACGAAGGATAATGAGGAGAAGCCCGTTCAAAGCCCACAAAAACTG
GCGGAAGAAGAACCCACTTCTTCGGAACCGAGTAGCAAGGAAGCTCTAAG
CGGTTCAACGCAACAAAAGATATTTTTATTGAAAAAACCGCAACAATGTG
ATAAATCGGATAAATTAACTTTTTCTAGCCCTTTTAAGAAGATACTTAAC
CGATATTCCTCGAGTGATACGTCCATTTCAAGTGAAGGTGAAGAGCCTGC
AAATAGTAGTGAAAACAAATCGCGTGTACTTAAAACCAGTCAGAATGCCA
TTAATATTAAACTAGCTACCGACTTATCGAATGAGAGTGGATACGAATCC
ATAGCACCTGCCAAAACAATTTCAAATACTGAAGTAATCGAAGAAGATCA
GGAGGAGACGAGCGAGGACGATGCCGAGTGTGGGATAAACATGCCTGCCT
CCAAACTCAAAATTACCTACAAATTCCATCAAACGGAAACCAAGTTGCTT
CGAAAGCTCTTTAATGTCCATGGCCTTACTGAAGTTCAGGGTGAAAATAA
TAACTTTAATTTACTCTGGACGGGTGTTCATATGAAATTAGATATTGTTA
GAAATTTGGCGCCGTATCAGAGGGTTAATCATTTCCCTAGGTCCTACGAA
ATGACACGAAAGGATCGACTATATAAAAACATCGAACGCATGCAACATCT
TCGGGGTATGAAGCATTTTGATATTGTGCCACAAACATTCGTTCTGCCAA
TCGAATCCCGAGATTTAGTAGTAGCCCACAACAAGCATCGCGGACCATGG
ATAGTTAAGCCAGCGGCATCCAGTCGAGGAAGGGGAATATTTATTGTTAA
TTCGCCAGATCAAATACCTCAAGATGAGCAGGCGGTGGTGTCGAAATATA
TAGTGGATCCGCTGTGCATTGATGGTCACAAATGTGATTTGAGGGTATAC
GTTCTAGTCACTTCCTTCGATCCCCTAATTATTTATTTATATGAAGAGGG
CATTGTGAGATTGGCCACAGTCAAGTATGACAGGCATGCCGATAACCTGT
GGAACCCGTGCATGCATCTCTGCAATTACAGCATTAACAAATACCATTCT
GATTACATAAGGAGCTCCGATGCTCAGGATGAGGATGTAGGCCATAAGTG
GACGTTGTCCGCTCTTTTAAGGCACCTGAAACTCCAGAGTTGTGATACAC
GTCAGCTAATGCTGAATATTGAGGATTTAATTATTAAAGCTGTGCTAGCC
TGTGCTCAATCTATTATTTCGGCCTGCAGGATGTTCGTTCCCAATGGAAA
TAACTGCTTTGAGCTGTATGGATTCGATATATTAATAGACAACGCACTTA
AGCCATGGCTACTGGAAATCAATCTATCGCCGTCAATGGGTGTGGATAGT
CCTTTGGACACTAAGGTGAAGTCATGTCTGATGGCAGACCTATTGACGTG
TGTGGGCATTCCAGCCTATAGTCCCGAAATGAAATCTCATTATGACCAGA
AATGGTCGCGTTTCCGCAGCTCAAGCTGCCAAAGGATAGCAACTTTTCCC
AGTACCTCGCAAAAGACAAAGAAGTCGAAGAAAAAAGGAGCTGCCATTAA
TCTTAATCTAACCGGCGAAGAGCAGCGCATATTGCGCAATGCACGCCTAC
AGTATTCTCGTCGTGGAGGATTCGTGCGCATCTTTCCCACAGATGACTCA
ATGCAGCGGTATGGTAATTTCCTTGATTCTGCTAATGGCATTCCGATCTC
CACACCAAATGTACAGAGTCAGACATTCCAAACGCCGATTATACAGCACA
ACTACAACCAGATGCTTCACCAAAATTTATACTCCAAGGACGGCCGGCAA
AAGCAGGACGATAATAATGAAGCTGATCGGATTTGGCAATACGAAAGGGC
TTTGGAAACCGATTCGGAAATTCCATTTGTCAAGAAGCCCACAGTTGAGA
AGTGCGAAGTGGAGGGGAGGCGGTTGCGGAAGATCATGCTCAAGAAAATA
TCCAATGGGTCAGAGCTGACGCCTTTTCAAGCGCGTCAGACGTTCAGCAT
GTACTTGGAATCGGTTCTTCGGCGGCTTACCGAAGATCCGAAAGACAATC
ACGAGAAAATAATACTTAAGTTTTTGAACAAGTTCGGCGGATCTGTAAAG
CCGCCAGTCATGTTCCGGAATATGCAAACCATCAAGGTGGCCAGCAAAGC
CCGATCCGCAATGGTGGCGAAACTTCTTGGTGACTTTCTGGAGAACTACA
AAAGAGATACAGAGGCGTATGTGGACTCGTTCGATCACTTCGGAATGATT
CCATCCAGCGCCTACAATCAGTTCTTGATGCACGCCCAGGAGTCCGATTT
GGAGGCAGTGCTGACACTTCACACCAATGTGACCGGTATCATGCCCTTCC
TGTACAACCGATGTGGACTGTCAGTGCCACCCACTCCCCCGATTCCGTCT
GGCTTGCATGGCTTTTTGAGAGCCCTGCCCTCCATGGTATCCTCCACTGG
CATCAACAGGGAGCTCAGCAAGTACGATGGATACTTCAAGAACTTCGACA
AGGAGAAGGTATTTCTATGAAAGCTTTCTAGACCAT
BS31146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31108-RB | 2754 | CG31108-PB | 1..2754 | 17..2770 | 13770 | 100 | Plus |
| CG31108-RA | 2754 | CG31108-PA | 1..2754 | 17..2770 | 13770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31108-RB | 3273 | CG31108-RB | 362..3123 | 10..2771 | 13780 | 99.9 | Plus |
| CG31108-RA | 3463 | CG31108-RA | 362..3123 | 10..2771 | 13780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25113207..25114924 | 2771..1054 | 8590 | 100 | Minus |
| 3R | 32079331 | 3R | 25115253..25116040 | 842..55 | 3940 | 100 | Minus |
| 3R | 32079331 | 3R | 25114979..25115194 | 1054..839 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 25116112..25116156 | 54..10 | 195 | 95.6 | Minus |
Blast to na_te.dros performed 2014-11-28 12:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 2611..2693 | 474..553 | 120 | 62.7 | Plus |
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 2719..2801 | 474..553 | 120 | 62.7 | Plus |
BS31146.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:36 Download gff for
BS31146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31108-RA | 358..3110 | 17..2769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:49 Download gff for
BS31146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31108-RA | 369..3121 | 17..2769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:59 Download gff for
BS31146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31108-RA | 369..3121 | 17..2769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:59 Download gff for
BS31146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25113209..25114923 | 1055..2769 | 100 | <- | Minus |
| 3R | 25114979..25115192 | 841..1054 | 100 | <- | Minus |
| 3R | 25115255..25116040 | 55..840 | 100 | <- | Minus |
| 3R | 25116112..25116149 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:49 Download gff for
BS31146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20938931..20940645 | 1055..2769 | 100 | <- | Minus |
| arm_3R | 20940701..20940914 | 841..1054 | 100 | <- | Minus |
| arm_3R | 20940977..20941762 | 55..840 | 100 | <- | Minus |
| arm_3R | 20941834..20941871 | 17..54 | 100 | | Minus |
BS31146.pep Sequence
Translation from 16 to 2769
> BS31146.pep
MPSSLCEALTNSSISFDYQKEDDWITSGKLGSREAVLVFRTNILNPKIRK
TLSEKSSAQVLTDTKDNEEKPVQSPQKLAEEEPTSSEPSSKEALSGSTQQ
KIFLLKKPQQCDKSDKLTFSSPFKKILNRYSSSDTSISSEGEEPANSSEN
KSRVLKTSQNAINIKLATDLSNESGYESIAPAKTISNTEVIEEDQEETSE
DDAECGINMPASKLKITYKFHQTETKLLRKLFNVHGLTEVQGENNNFNLL
WTGVHMKLDIVRNLAPYQRVNHFPRSYEMTRKDRLYKNIERMQHLRGMKH
FDIVPQTFVLPIESRDLVVAHNKHRGPWIVKPAASSRGRGIFIVNSPDQI
PQDEQAVVSKYIVDPLCIDGHKCDLRVYVLVTSFDPLIIYLYEEGIVRLA
TVKYDRHADNLWNPCMHLCNYSINKYHSDYIRSSDAQDEDVGHKWTLSAL
LRHLKLQSCDTRQLMLNIEDLIIKAVLACAQSIISACRMFVPNGNNCFEL
YGFDILIDNALKPWLLEINLSPSMGVDSPLDTKVKSCLMADLLTCVGIPA
YSPEMKSHYDQKWSRFRSSSCQRIATFPSTSQKTKKSKKKGAAINLNLTG
EEQRILRNARLQYSRRGGFVRIFPTDDSMQRYGNFLDSANGIPISTPNVQ
SQTFQTPIIQHNYNQMLHQNLYSKDGRQKQDDNNEADRIWQYERALETDS
EIPFVKKPTVEKCEVEGRRLRKIMLKKISNGSELTPFQARQTFSMYLESV
LRRLTEDPKDNHEKIILKFLNKFGGSVKPPVMFRNMQTIKVASKARSAMV
AKLLGDFLENYKRDTEAYVDSFDHFGMIPSSAYNQFLMHAQESDLEAVLT
LHTNVTGIMPFLYNRCGLSVPPTPPIPSGLHGFLRALPSMVSSTGINREL
SKYDGYFKNFDKEKVFL*
BS31146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31108-PB | 917 | CG31108-PB | 1..917 | 1..917 | 4776 | 100 | Plus |
| CG31108-PA | 917 | CG31108-PA | 1..917 | 1..917 | 4776 | 100 | Plus |
| CG16833-PM | 827 | CG16833-PM | 334..772 | 226..638 | 616 | 33.9 | Plus |
| CG16833-PK | 827 | CG16833-PK | 334..772 | 226..638 | 616 | 33.9 | Plus |
| CG16833-PF | 828 | CG16833-PF | 334..772 | 226..638 | 616 | 33.9 | Plus |
